Click here to switch to the map view.

The map label for this gene is fecI [C]

Identifier: 158315367

GI number: 158315367

Start: 4232002

End: 4232877

Strand: Direct

Name: fecI [C]

Synonym: Franean1_3569

Alternate gene names: 158315367

Gene position: 4232002-4232877 (Clockwise)

Preceding gene: 158315366

Following gene: 158315368

Centisome position: 47.12

GC content: 68.72

Gene sequence:

>876_bases
GTGGGGGATCTCGATGAGGCGGCGGCTATCTTCATGGGCGTGCGGCCACGCCTGTTCGGGATCGCGTACCGGATGCTCGG
TAGCGCCAGCGAGGCGGAGGACCTGGTGCAGGACGTCTGGCTGCGCTGGCAGGCGACCGACCGCAGCGTGGTGAAGAGTC
CGGGCGCCTTCCTGGCGACGACCACGACCCGGCTGGCCATCAACGAGCTGCAGTCGGCGCGGGTGCGGCGCGAGACGTAC
ATCGGGCCGTGGCTGCCGGAGCCGGTCGACACCAGTGCGGATCCGTTCCTGGGGGCCGAGCGTGGGGAGGCGCTCGAGTT
GGCGGTCCTGATGCTGATGGAGAAGCTCACCCCGCAGGAGCGCGCGGCGTACGTGTTGCGGCAGGCGTTCGACTACCCGT
ACCCGCAGATCGCCGGCATCCTGCAGTCCACCGAGCCGGCCGTACGGCAACTGGTCAGCCGGGCCCGCAAACACGTCACC
GGCGAGCGGAAGATACCGGTGCTCGAGACCGCGCAGCGCCAGCTGCTGGCCACCTTCCTTGAGGCCGCCCGCGCGGGTGA
TCTCGAGGCGCTGGAGAAGCTGTTCGCGGCCGACGTGGCGAGCATCTCCGACGGCAACGGCGCCCGGCAGGTTTCCCGCA
AGGTGGTGTCCGGCGCGGCCCGGGTGGCGAAGTACATCGCGGCGTTCTCCACTTGGTTCTGGGATGGCGTGGAGCTGCAA
TGGGTCACCACGAACGGGCAGACGAGCGCCATCATGCGTCGCGGTGACACGCTCCTCGGAATGGTCACGATCGTCGCCTC
CGAGGCGGGCATCGAGCAGCTGCTGTGGATGTTGAATCTGGAGAAGGTCGCCGCCGTGGCCGATGTCACAGAATAG

Upstream 100 bases:

>100_bases
TCGCTCGGTCGTGGCGTGCCGTCGAGAGCTGGGACGGGCAGGTTCCGAATCTGGGCCGGGCGGCTAGCCTTGAGTCGCGA
AACGACCTTGGGGGGCCGTG

Downstream 100 bases:

>100_bases
GTGCCTGCCCTGTCTGTACTCGTGATGGCGAGAGACAGGGACGAAGATGCGGACGATCCTGATCGTTGGCGGCGGGTACG
CCGGCTTCTACACGGCTTGG

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Subunit; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor SigJ; Sigma Factor; RNA Polymerase ECF-Subfamily Sigma Factor; Sigma-; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF-Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor; Sigma-70 Region 2 Domain-Containing Protein; RNA Polymerase Sigma-70 Factor; ECF Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase Sigma Factor Sigma-70 Family Protein; ECF Sigma Factor; Sigma Factor Sigma; RNA Polymerase; Sigma-70 Factor; RNA Polymerase ECF-Type Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; ECF-Family Protein RNA Polymerase Sigma Factor; AlteRNAtive RNA Polymerase Sigma Factor SigJ; Sigma-70 Family RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase; RNA Polymerase Sigma-24 Factor Protein; RNA Polymerase Sigma Subunit ECF Family; RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma-70 Factor Family; RNA Polymerase Sigma-24 Factor; ECF-Type Sigma Factor; RNA Polymerase Sigma-70 ECF Type; RNA Polymerase Sigma-70 Factor Protein; AlteRNAtive RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70-Like Factor; ECF Subfamily RNA Polymerase Sigma-

Number of amino acids: Translated: 291; Mature: 290

Protein sequence:

>291_residues
MGDLDEAAAIFMGVRPRLFGIAYRMLGSASEAEDLVQDVWLRWQATDRSVVKSPGAFLATTTTRLAINELQSARVRRETY
IGPWLPEPVDTSADPFLGAERGEALELAVLMLMEKLTPQERAAYVLRQAFDYPYPQIAGILQSTEPAVRQLVSRARKHVT
GERKIPVLETAQRQLLATFLEAARAGDLEALEKLFAADVASISDGNGARQVSRKVVSGAARVAKYIAAFSTWFWDGVELQ
WVTTNGQTSAIMRRGDTLLGMVTIVASEAGIEQLLWMLNLEKVAAVADVTE

Sequences:

>Translated_291_residues
MGDLDEAAAIFMGVRPRLFGIAYRMLGSASEAEDLVQDVWLRWQATDRSVVKSPGAFLATTTTRLAINELQSARVRRETY
IGPWLPEPVDTSADPFLGAERGEALELAVLMLMEKLTPQERAAYVLRQAFDYPYPQIAGILQSTEPAVRQLVSRARKHVT
GERKIPVLETAQRQLLATFLEAARAGDLEALEKLFAADVASISDGNGARQVSRKVVSGAARVAKYIAAFSTWFWDGVELQ
WVTTNGQTSAIMRRGDTLLGMVTIVASEAGIEQLLWMLNLEKVAAVADVTE
>Mature_290_residues
GDLDEAAAIFMGVRPRLFGIAYRMLGSASEAEDLVQDVWLRWQATDRSVVKSPGAFLATTTTRLAINELQSARVRRETYI
GPWLPEPVDTSADPFLGAERGEALELAVLMLMEKLTPQERAAYVLRQAFDYPYPQIAGILQSTEPAVRQLVSRARKHVTG
ERKIPVLETAQRQLLATFLEAARAGDLEALEKLFAADVASISDGNGARQVSRKVVSGAARVAKYIAAFSTWFWDGVELQW
VTTNGQTSAIMRRGDTLLGMVTIVASEAGIEQLLWMLNLEKVAAVADVTE

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31954; Mature: 31823

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDLDEAAAIFMGVRPRLFGIAYRMLGSASEAEDLVQDVWLRWQATDRSVVKSPGAFLAT
CCCHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCEEEH
TTTRLAINELQSARVRRETYIGPWLPEPVDTSADPFLGAERGEALELAVLMLMEKLTPQE
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHH
RAAYVLRQAFDYPYPQIAGILQSTEPAVRQLVSRARKHVTGERKIPVLETAQRQLLATFL
HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
EAARAGDLEALEKLFAADVASISDGNGARQVSRKVVSGAARVAKYIAAFSTWFWDGVELQ
HHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
WVTTNGQTSAIMRRGDTLLGMVTIVASEAGIEQLLWMLNLEKVAAVADVTE
EEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GDLDEAAAIFMGVRPRLFGIAYRMLGSASEAEDLVQDVWLRWQATDRSVVKSPGAFLAT
CCHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCEEEH
TTTRLAINELQSARVRRETYIGPWLPEPVDTSADPFLGAERGEALELAVLMLMEKLTPQE
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHH
RAAYVLRQAFDYPYPQIAGILQSTEPAVRQLVSRARKHVTGERKIPVLETAQRQLLATFL
HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
EAARAGDLEALEKLFAADVASISDGNGARQVSRKVVSGAARVAKYIAAFSTWFWDGVELQ
HHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
WVTTNGQTSAIMRRGDTLLGMVTIVASEAGIEQLLWMLNLEKVAAVADVTE
EEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA