| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158315301
Identifier: 158315301
GI number: 158315301
Start: 4163485
End: 4163964
Strand: Direct
Name: 158315301
Synonym: Franean1_3501
Alternate gene names: NA
Gene position: 4163485-4163964 (Clockwise)
Preceding gene: 158315299
Following gene: 158315304
Centisome position: 46.35
GC content: 73.33
Gene sequence:
>480_bases TTGACTAGGCCCGGCCCCAGCCCCGGGGCCGGGTCCGGCCAGATCCACTCGGGCACCCCGGTTCACCTGGTCCTCAACCG GTTCGACGACGAGTTCGGCAACTACGCGCGCTACACCCCGCCGGGCTGCCGTCTGGTGCACATCACGACCCCCGGCGGTC TGGCGGCCGTCGACGGCAGCCGGTTCGGGCGTCCGGCGGACGCCGACGAGCCGCTGGAGATCGCCATCGTGCCCGACACC CGGTTCGAGACCGTCCTACCGGTGGCGGAGGACCTGGCGGCCCGGTGGGGCCCGTTCGCCGGCGTCGCCGGCCTGTCGGA GTACGACCTGACCACCGCCGCCCGTCTGCGCGAACACCTGGATGTCCCCGGCTGCCGGCCCGCCTTCGTTCACCGTTTCC GGGACAAGTCGACGATGAAGGCGGCGGTCGCCGACGCCGTCCCGGCCCGTCGCCGCCGCCGGATGACATGCGCACCATGA
Upstream 100 bases:
>100_bases ATGCCGATCGGGTAGCGCCGCCTCGGCCACGTGCTCTTCGTCGCAGACTCCGCCGCCGAGGCGGAGCAGCGCTGGCATCA CCTCGGCGAGCAGGCGCGCT
Downstream 100 bases:
>100_bases CACCGGACGACCACGACGACGAGGGACGCGGGGGGCCGCTGCGGACCTACTTCGTGCTGCGCGCGGTGGGGGCGCTGGCG AACCAGCTGCTGCAGTTCGC
Product: biotin carboxylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 159; Mature: 158
Protein sequence:
>159_residues MTRPGPSPGAGSGQIHSGTPVHLVLNRFDDEFGNYARYTPPGCRLVHITTPGGLAAVDGSRFGRPADADEPLEIAIVPDT RFETVLPVAEDLAARWGPFAGVAGLSEYDLTTAARLREHLDVPGCRPAFVHRFRDKSTMKAAVADAVPARRRRRMTCAP
Sequences:
>Translated_159_residues MTRPGPSPGAGSGQIHSGTPVHLVLNRFDDEFGNYARYTPPGCRLVHITTPGGLAAVDGSRFGRPADADEPLEIAIVPDT RFETVLPVAEDLAARWGPFAGVAGLSEYDLTTAARLREHLDVPGCRPAFVHRFRDKSTMKAAVADAVPARRRRRMTCAP >Mature_158_residues TRPGPSPGAGSGQIHSGTPVHLVLNRFDDEFGNYARYTPPGCRLVHITTPGGLAAVDGSRFGRPADADEPLEIAIVPDTR FETVLPVAEDLAARWGPFAGVAGLSEYDLTTAARLREHLDVPGCRPAFVHRFRDKSTMKAAVADAVPARRRRRMTCAP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17131; Mature: 16999
Theoretical pI: Translated: 8.51; Mature: 8.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRPGPSPGAGSGQIHSGTPVHLVLNRFDDEFGNYARYTPPGCRLVHITTPGGLAAVDGS CCCCCCCCCCCCCEECCCCCCEEHEEHHHHHHCCCCCCCCCCCEEEEEECCCCEEEECCC RFGRPADADEPLEIAIVPDTRFETVLPVAEDLAARWGPFAGVAGLSEYDLTTAARLREHL CCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHC DVPGCRPAFVHRFRDKSTMKAAVADAVPARRRRRMTCAP CCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure TRPGPSPGAGSGQIHSGTPVHLVLNRFDDEFGNYARYTPPGCRLVHITTPGGLAAVDGS CCCCCCCCCCCCEECCCCCCEEHEEHHHHHHCCCCCCCCCCCEEEEEECCCCEEEECCC RFGRPADADEPLEIAIVPDTRFETVLPVAEDLAARWGPFAGVAGLSEYDLTTAARLREHL CCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHC DVPGCRPAFVHRFRDKSTMKAAVADAVPARRRRRMTCAP CCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA