| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158315239
Identifier: 158315239
GI number: 158315239
Start: 4070259
End: 4070747
Strand: Reverse
Name: 158315239
Synonym: Franean1_3439
Alternate gene names: NA
Gene position: 4070747-4070259 (Counterclockwise)
Preceding gene: 158315241
Following gene: 158315238
Centisome position: 45.32
GC content: 69.53
Gene sequence:
>489_bases ATGCAACTGACGGACGAGGAGTGGGCGTTCATCGAGCCTTACCTGCCGATCGGCGGGTTCGGCCCGTACCCGGCGCGGCT GCGGGCGCAGTTCGAGGGGGTGGTGTGGCGGTTTCGGACGGGTGGGCAGTGGCGGGAGATGCCGGCGGAGTTCGGTGCCT GGCCGACGGTCCACAACCGGTTCCGGCAGTGGCGGGACGCTGGTGTCTTCGAAGCCCTGCTGGAGGGCATGGTCGCCGAG GCCGCGAAGCGGGGTGAGGTGGACCTGTCCTTGGTCAGTGTGGACTCCACCACCGCCCAGGCCCACCACGATGCTGCCGG GATGCACCTGGGCCACGACGTCATCACCGCCTTGGAGAAAGCCGCTGTCGAGGAGGAGAAGGCCCGGGAAAAGGGGGCGA CTCGGAGGGACAAGACGGGCAGAACGCCGGATGCGACCCCGAGCGGGAAGAGCGACGACGTATCCGGCGCCGGCACGGCC TGCGGCTGA
Upstream 100 bases:
>100_bases AGTGAGGTCGTCCTCTAGGGCGCGTGTCGAGTTGTGATCTGTCTGCGGGATTCGCCCTCGTGGTGGGGTCTGATCCGGTA GATCGTCCTGCATGACACGG
Downstream 100 bases:
>100_bases AAGCTGCTCTGCTGGGACGGTCGAGGGGCGGGCAGACCAGCAAGGTCCACCTCGCCGCCGACCGCAGGTGCCGCCCGCTG GCGTTCGTCCTGACCGCGGG
Product: IS1647-like transposase
Products: NA
Alternate protein names: ISBm1 Transposase OrfA; Transposase And Inactivated Derivatives-Like Protein; Transposase IS4 Family Protein; Insertion Element Transposase; ISPs1 Transposase OrfA; IS5 Family Transposase OrfA; Transposase-Like Protein; Transposase And Inactivated Derivative; ISRin4 Transposase OrfA; IS4 Insertion Sequence Transposase Protein; Transposase Is4 Family Protein; ISSod6 Transposase; LOW QUALITY PROTEIN Transposase IS4 Family Protein; Transposase-Related Protein; Transposase Related Protein; ISBm1 Transposase; IS5 Family Transposase; Transposase Fragment
Number of amino acids: Translated: 162; Mature: 162
Protein sequence:
>162_residues MQLTDEEWAFIEPYLPIGGFGPYPARLRAQFEGVVWRFRTGGQWREMPAEFGAWPTVHNRFRQWRDAGVFEALLEGMVAE AAKRGEVDLSLVSVDSTTAQAHHDAAGMHLGHDVITALEKAAVEEEKAREKGATRRDKTGRTPDATPSGKSDDVSGAGTA CG
Sequences:
>Translated_162_residues MQLTDEEWAFIEPYLPIGGFGPYPARLRAQFEGVVWRFRTGGQWREMPAEFGAWPTVHNRFRQWRDAGVFEALLEGMVAE AAKRGEVDLSLVSVDSTTAQAHHDAAGMHLGHDVITALEKAAVEEEKAREKGATRRDKTGRTPDATPSGKSDDVSGAGTA CG >Mature_162_residues MQLTDEEWAFIEPYLPIGGFGPYPARLRAQFEGVVWRFRTGGQWREMPAEFGAWPTVHNRFRQWRDAGVFEALLEGMVAE AAKRGEVDLSLVSVDSTTAQAHHDAAGMHLGHDVITALEKAAVEEEKAREKGATRRDKTGRTPDATPSGKSDDVSGAGTA CG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17712; Mature: 17712
Theoretical pI: Translated: 5.30; Mature: 5.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQLTDEEWAFIEPYLPIGGFGPYPARLRAQFEGVVWRFRTGGQWREMPAEFGAWPTVHNR CCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCEEEEECCCCCHHHCCHHHCCCHHHHHH FRQWRDAGVFEALLEGMVAEAAKRGEVDLSLVSVDSTTAQAHHDAAGMHLGHDVITALEK HHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHH AAVEEEKAREKGATRRDKTGRTPDATPSGKSDDVSGAGTACG HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MQLTDEEWAFIEPYLPIGGFGPYPARLRAQFEGVVWRFRTGGQWREMPAEFGAWPTVHNR CCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCEEEEECCCCCHHHCCHHHCCCHHHHHH FRQWRDAGVFEALLEGMVAEAAKRGEVDLSLVSVDSTTAQAHHDAAGMHLGHDVITALEK HHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHH AAVEEEKAREKGATRRDKTGRTPDATPSGKSDDVSGAGTACG HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA