| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is idnR [C]
Identifier: 158315032
GI number: 158315032
Start: 3813356
End: 3814159
Strand: Direct
Name: idnR [C]
Synonym: Franean1_3227
Alternate gene names: 158315032
Gene position: 3813356-3814159 (Clockwise)
Preceding gene: 158315031
Following gene: 158315033
Centisome position: 42.46
GC content: 63.81
Gene sequence:
>804_bases GTGACTGGTCGTAGTTCCACCGTGCTTCTCCTCGTGCCGAGCGTGCCTGTCGGCCTGGGCGTCCAGGAGTCGATCGACGA GCTTAGTGATCATATAGCACGGCGCGGGCTCCATCTGGTGGTGCAGTTCGCCCGCAACCATCCGACGGTGATTCTGGACG ACATAGCGCGTTCAAGCCCGGTGGCAGTCGTGGACCTCGGAGTGCTGCCCAGCGAGACGCGCGAGGCCGTACGGGCCTCG GGTGTGGTGGTCGTGCCGGAGGCGCTGGTGATTCGAAGCGAGGAGTTCCAGCATCTGATCGGGCGCGCCATGATCCAGCG ACTGGTCAAGCGTCGTACCGTGCGGCGCTTCCTCTACGCGGCATCGACCGACGTACGTAGCTATCTCTATGACACTGACC GTTACGCCGGCCTGCGCGAAGCCGCGGCGGAGTTTGGTCTGGAGGATCCTGTACGCGTCGACATCCCGCTTGACCTTGCG GGTGCCGTACGAGCGTTGCGGTCGCACCTCATCGACCACGAACCACTCGGGGTCGCCTGCTGTACCGATGTGGTCGCCTT GGCCGTGATGGCGGTCTGTCGCGAACTGAGGCGAGGTGTCCCGGACGACGTTGCGGTCATCGGCGTCGATGCCACGGCTG AGGGGCAGTTGGTTTCACCGCGCCTGACCTCGATCAGGACCGATCAGCACGCGATCGGTGAAGGTCTTGCGGCTGAGCTT CTGGCGGCGATTGATGGTGTTCATTTCTCGGTCCCCGTACGGGACGCCGTTCCAGTAAGTGTGGTCGAAGGTGAGACGGT CTGA
Upstream 100 bases:
>100_bases CAATGGCAGAGGCGCCCGGTTCCCGACGGAGACCCGCGACCGCGTCCGGGCGGCCGCTGCGCAGCTGCGGTATTATCCGT CCCCGGCAGGACGGTCGCTT
Downstream 100 bases:
>100_bases TCCGTGGGTTCCGGAACCCCGATTCGTCTGAGCCCCATGATCCTTGGTGGATGGTGCTAAACCATTGTATAAGGCTTTCC CTGGGGTGTGTCAACGGTGT
Product: transcriptional regulator-like protein
Products: NA
Alternate protein names: Transcriptional Regulators-Like Protein
Number of amino acids: Translated: 267; Mature: 266
Protein sequence:
>267_residues MTGRSSTVLLLVPSVPVGLGVQESIDELSDHIARRGLHLVVQFARNHPTVILDDIARSSPVAVVDLGVLPSETREAVRAS GVVVVPEALVIRSEEFQHLIGRAMIQRLVKRRTVRRFLYAASTDVRSYLYDTDRYAGLREAAAEFGLEDPVRVDIPLDLA GAVRALRSHLIDHEPLGVACCTDVVALAVMAVCRELRRGVPDDVAVIGVDATAEGQLVSPRLTSIRTDQHAIGEGLAAEL LAAIDGVHFSVPVRDAVPVSVVEGETV
Sequences:
>Translated_267_residues MTGRSSTVLLLVPSVPVGLGVQESIDELSDHIARRGLHLVVQFARNHPTVILDDIARSSPVAVVDLGVLPSETREAVRAS GVVVVPEALVIRSEEFQHLIGRAMIQRLVKRRTVRRFLYAASTDVRSYLYDTDRYAGLREAAAEFGLEDPVRVDIPLDLA GAVRALRSHLIDHEPLGVACCTDVVALAVMAVCRELRRGVPDDVAVIGVDATAEGQLVSPRLTSIRTDQHAIGEGLAAEL LAAIDGVHFSVPVRDAVPVSVVEGETV >Mature_266_residues TGRSSTVLLLVPSVPVGLGVQESIDELSDHIARRGLHLVVQFARNHPTVILDDIARSSPVAVVDLGVLPSETREAVRASG VVVVPEALVIRSEEFQHLIGRAMIQRLVKRRTVRRFLYAASTDVRSYLYDTDRYAGLREAAAEFGLEDPVRVDIPLDLAG AVRALRSHLIDHEPLGVACCTDVVALAVMAVCRELRRGVPDDVAVIGVDATAEGQLVSPRLTSIRTDQHAIGEGLAAELL AAIDGVHFSVPVRDAVPVSVVEGETV
Specific function: Idn Operon Regulator. May Repress Gntku And Gntt Genes When Growing On L-Idonate. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28692; Mature: 28561
Theoretical pI: Translated: 5.36; Mature: 5.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGRSSTVLLLVPSVPVGLGVQESIDELSDHIARRGLHLVVQFARNHPTVILDDIARSSP CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC VAVVDLGVLPSETREAVRASGVVVVPEALVIRSEEFQHLIGRAMIQRLVKRRTVRRFLYA EEEEEECCCCHHHHHHHHHCCEEEECHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ASTDVRSYLYDTDRYAGLREAAAEFGLEDPVRVDIPLDLAGAVRALRSHLIDHEPLGVAC HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCHHH CTDVVALAVMAVCRELRRGVPDDVAVIGVDATAEGQLVSPRLTSIRTDQHAIGEGLAAEL HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEECCHHHHHCCCHHHHHHHHHHHH LAAIDGVHFSVPVRDAVPVSVVEGETV HHHHCCCEEEECCCCCCCEEEECCCCC >Mature Secondary Structure TGRSSTVLLLVPSVPVGLGVQESIDELSDHIARRGLHLVVQFARNHPTVILDDIARSSP CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC VAVVDLGVLPSETREAVRASGVVVVPEALVIRSEEFQHLIGRAMIQRLVKRRTVRRFLYA EEEEEECCCCHHHHHHHHHCCEEEECHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ASTDVRSYLYDTDRYAGLREAAAEFGLEDPVRVDIPLDLAGAVRALRSHLIDHEPLGVAC HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCHHH CTDVVALAVMAVCRELRRGVPDDVAVIGVDATAEGQLVSPRLTSIRTDQHAIGEGLAAEL HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEECCHHHHHCCCHHHHHHHHHHHH LAAIDGVHFSVPVRDAVPVSVVEGETV HHHHCCCEEEECCCCCCCEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA