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The map label for this gene is ybfL [H]

Identifier: 158314631

GI number: 158314631

Start: 3325511

End: 3326698

Strand: Direct

Name: ybfL [H]

Synonym: Franean1_2810

Alternate gene names: 158314631

Gene position: 3325511-3326698 (Clockwise)

Preceding gene: 158314628

Following gene: 158314632

Centisome position: 37.02

GC content: 63.38

Gene sequence:

>1188_bases
GTGCCATCATGCCAGCAATCTCCCGCCGTGTCGAACCTTCGGATCAGCGGTGAGGGGGACGACATCTCCGGTCTGCTCGC
GATGCTAGGCGGGATCACCGACCCACGGAAAGCGCGCGGGAAGATCTACAGCCTTTCGTTCATGCTGGCCTCCGCGCTTG
TCGCGACGTTGGCTGGGGCGACAGGCCTGCGTGAGATCGGCAGCCGGGTCGCTGACTTCGGCCAAGATCTCCTGGCCCGG
CTCGGTGCACCGTTCGACCATTTCACTGGAAGATATAGGGCGCCCAGCGAAAAGGCGATCCGCGCTCTGTTCGAGAAGAT
GGACGTCGCGGCCGTCGACGCCGCCTTCGGTGCCTGGTTGTTCGCGCACGCGGTCTGGGAGCCGGGTGAGGACATCGTCC
TCGCCATGGACGCGAAGGTCCTGCGTGGAGCCTGGTCCGAGGGGAACAAGCAGGTCACGCTCCTGTCTGCCATGGTCCAC
GCGAATGGGCTCGTCGCCGGGCAGGTCCGCGTCCCCGACGGCACGAACGAGATCACCCAGGTAGCGGCTCTCCTGGAGAA
CCTCCCGGACATCTCCGGGCCTGTCGTCGCGACGTTGGATGCCGTGCACACCCAGCACGAAACCGCCTTCCTCCTTGTCG
AACACGGAATCGACTACGCGCTGACCGTGAAGGGAAACCAGCCGACGCTCTACCGGAAAACCTTCGAGCAAACCCTTCCC
CTTCTCCAAAAACCCCCACAGCACGAAGTCGAGGAACGCGGCCACGGCCGAATCAAGAAATGGCAGGCCTGGACCACCGA
AGCCAAGGGGATCGGGTTTCCGGAGGTCGCGACCGCTGCCGTCATCCGTCGCGACGAATTCGACCTCAAGGGAATCCGTG
TCAGCCGTGAATACGCTCACATTCTCACCAGCGTCGCCGGCAACCGCGCCACTGCCGCCTACATTCACAGGCTCATCCGC
GGGCATTGGGGCATCGAGAACGAAATTCACTACCCGCGCGACACCGCGTGGCGCGAGGACGCCAACCAGACCCGCACAGG
AAATAGTCCACACACGCTCGCCAGCTTCCGTAACCTGGCGATCGGGATCATCCGCCGAAACGGCATCAGGAAGATAAAGG
AAACCCTCGAGTACATAGCCGGCGACCGCGACCGGGTACTCCCACTCCTCGCTACGGCATGTCACTAA

Upstream 100 bases:

>100_bases
TATCTCGGCGAGATCCGGGCAGCTGTTGTGAGGAAAGTGGCCTTCTGTACGGGAGAATGAAAGCGCCAACAATCAAAACC
CCGTAACAGAAGGCCACCGC

Downstream 100 bases:

>100_bases
ACATAGCACCAAGTTACCTCGCCGAGGCCCTGGTCAGGACCAGCCTGGCCGGCCTTTGTGCCGGGAGAGACCTACGGAGA
TGACGCTCTGCCCGATGATG

Product: transposase IS4 family protein

Products: NA

Alternate protein names: H repeat-associated protein in rhsC-phrB intergenic region; ORF-H2 [H]

Number of amino acids: Translated: 395; Mature: 394

Protein sequence:

>395_residues
MPSCQQSPAVSNLRISGEGDDISGLLAMLGGITDPRKARGKIYSLSFMLASALVATLAGATGLREIGSRVADFGQDLLAR
LGAPFDHFTGRYRAPSEKAIRALFEKMDVAAVDAAFGAWLFAHAVWEPGEDIVLAMDAKVLRGAWSEGNKQVTLLSAMVH
ANGLVAGQVRVPDGTNEITQVAALLENLPDISGPVVATLDAVHTQHETAFLLVEHGIDYALTVKGNQPTLYRKTFEQTLP
LLQKPPQHEVEERGHGRIKKWQAWTTEAKGIGFPEVATAAVIRRDEFDLKGIRVSREYAHILTSVAGNRATAAYIHRLIR
GHWGIENEIHYPRDTAWREDANQTRTGNSPHTLASFRNLAIGIIRRNGIRKIKETLEYIAGDRDRVLPLLATACH

Sequences:

>Translated_395_residues
MPSCQQSPAVSNLRISGEGDDISGLLAMLGGITDPRKARGKIYSLSFMLASALVATLAGATGLREIGSRVADFGQDLLAR
LGAPFDHFTGRYRAPSEKAIRALFEKMDVAAVDAAFGAWLFAHAVWEPGEDIVLAMDAKVLRGAWSEGNKQVTLLSAMVH
ANGLVAGQVRVPDGTNEITQVAALLENLPDISGPVVATLDAVHTQHETAFLLVEHGIDYALTVKGNQPTLYRKTFEQTLP
LLQKPPQHEVEERGHGRIKKWQAWTTEAKGIGFPEVATAAVIRRDEFDLKGIRVSREYAHILTSVAGNRATAAYIHRLIR
GHWGIENEIHYPRDTAWREDANQTRTGNSPHTLASFRNLAIGIIRRNGIRKIKETLEYIAGDRDRVLPLLATACH
>Mature_394_residues
PSCQQSPAVSNLRISGEGDDISGLLAMLGGITDPRKARGKIYSLSFMLASALVATLAGATGLREIGSRVADFGQDLLARL
GAPFDHFTGRYRAPSEKAIRALFEKMDVAAVDAAFGAWLFAHAVWEPGEDIVLAMDAKVLRGAWSEGNKQVTLLSAMVHA
NGLVAGQVRVPDGTNEITQVAALLENLPDISGPVVATLDAVHTQHETAFLLVEHGIDYALTVKGNQPTLYRKTFEQTLPL
LQKPPQHEVEERGHGRIKKWQAWTTEAKGIGFPEVATAAVIRRDEFDLKGIRVSREYAHILTSVAGNRATAAYIHRLIRG
HWGIENEIHYPRDTAWREDANQTRTGNSPHTLASFRNLAIGIIRRNGIRKIKETLEYIAGDRDRVLPLLATACH

Specific function: Unknown

COG id: COG5433

COG function: function code L; Transposase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 11 family [H]

Homologues:

Organism=Escherichia coli, GI1787733, Length=394, Percent_Identity=27.6649746192893, Blast_Score=115, Evalue=6e-27,
Organism=Escherichia coli, GI1789896, Length=390, Percent_Identity=27.1794871794872, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1786924, Length=246, Percent_Identity=29.2682926829268, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002559 [H]

Pfam domain/function: PF01609 Transposase_11 [H]

EC number: NA

Molecular weight: Translated: 43224; Mature: 43093

Theoretical pI: Translated: 8.28; Mature: 8.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSCQQSPAVSNLRISGEGDDISGLLAMLGGITDPRKARGKIYSLSFMLASALVATLAGA
CCCCCCCCCCCCEEECCCCCCHHHHHHHHCCCCCCHHHCCCEEHHHHHHHHHHHHHHHCC
TGLREIGSRVADFGQDLLARLGAPFDHFTGRYRAPSEKAIRALFEKMDVAAVDAAFGAWL
CCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FAHAVWEPGEDIVLAMDAKVLRGAWSEGNKQVTLLSAMVHANGLVAGQVRVPDGTNEITQ
HHHHHCCCCCCEEEEECHHHHHHHHCCCCCEEHHHHHHHHHCCEEEEEEECCCCCHHHHH
VAALLENLPDISGPVVATLDAVHTQHETAFLLVEHGIDYALTVKGNQPTLYRKTFEQTLP
HHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHH
LLQKPPQHEVEERGHGRIKKWQAWTTEAKGIGFPEVATAAVIRRDEFDLKGIRVSREYAH
HHCCCCHHHHHHCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEHHHHHH
ILTSVAGNRATAAYIHRLIRGHWGIENEIHYPRDTAWREDANQTRTGNSPHTLASFRNLA
HHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHH
IGIIRRNGIRKIKETLEYIAGDRDRVLPLLATACH
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
PSCQQSPAVSNLRISGEGDDISGLLAMLGGITDPRKARGKIYSLSFMLASALVATLAGA
CCCCCCCCCCCEEECCCCCCHHHHHHHHCCCCCCHHHCCCEEHHHHHHHHHHHHHHHCC
TGLREIGSRVADFGQDLLARLGAPFDHFTGRYRAPSEKAIRALFEKMDVAAVDAAFGAWL
CCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FAHAVWEPGEDIVLAMDAKVLRGAWSEGNKQVTLLSAMVHANGLVAGQVRVPDGTNEITQ
HHHHHCCCCCCEEEEECHHHHHHHHCCCCCEEHHHHHHHHHCCEEEEEEECCCCCHHHHH
VAALLENLPDISGPVVATLDAVHTQHETAFLLVEHGIDYALTVKGNQPTLYRKTFEQTLP
HHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHH
LLQKPPQHEVEERGHGRIKKWQAWTTEAKGIGFPEVATAAVIRRDEFDLKGIRVSREYAH
HHCCCCHHHHHHCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEHHHHHH
ILTSVAGNRATAAYIHRLIRGHWGIENEIHYPRDTAWREDANQTRTGNSPHTLASFRNLA
HHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHH
IGIIRRNGIRKIKETLEYIAGDRDRVLPLLATACH
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8387990; 8905232; 9278503 [H]