| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is spaC [H]
Identifier: 158314621
GI number: 158314621
Start: 3314242
End: 3315441
Strand: Direct
Name: spaC [H]
Synonym: Franean1_2800
Alternate gene names: 158314621
Gene position: 3314242-3315441 (Clockwise)
Preceding gene: 158314620
Following gene: 158314622
Centisome position: 36.9
GC content: 71.75
Gene sequence:
>1200_bases GTGACCACACTGTCCCGCCTCCCGACGGTCCCAGACCTCGGCGACGCCGAATCGGCGCGCTGGGCTCAGTCCCTCGGCGA CGGAGCACCAGGGATCGCACTGGCGCATATCGCTCGGGCCCGTGCCGGCCTCGACGGCTGGGAACCCGTGCACCGTCTCG CGGCGGCGATGACACGTAGTCCGCTCAACGCCCATCCGGACACCGCCAGCCTGTACCAGGGCGCACCGGCCGTCGCCTAC GCCCTGCATATCGCCGGCCACCGGGCCTACGACGCCGCGCTCGCCACCCTCGACGAGGCCATCGCCACCGTCATCCGGCG CCGTCTGGAGGCCGCCCACCGCCGCATCGATCACGAACAGCTGCCGCACGCCGGCGAGTACGACCTGATCAACGGGCTCA CCGGCCTCGGCGCACTCCTCCTACACCACGACCGCGAAAGCGCTCTTCTCCGGGACGTACTCGCGTACCTGGTGCGGCTG ACCCGACCCATCCGTGTCGATGGCCGCGACCTGCCCGGCTGGTGGGCAACGGGCAGCCCCGACCGCCGCGCCTCCGCCCG ATGGAACGCCGGCCATGCCGGCTTCGGCATGGCCCACGGCATCGCCGGGCCGCTGGCGCTCCTGGCCATCACCATGCGGC GGGGGATCGCCGTGGCGGGACACGTCGACGCGCTCCACAACATCATCGCGTGGCTCGACCAGTGGCGCAGAGGGCAGAGG CGGACTGGCTGGTGGCCCGAGGCGATCGACCACGACGAGCTGCGTACCGGCAGCGCAGCCTCCCCGGGGCCACCTCGGCC GTCCTGGTGCTACGGCAGTCCCGGCATCGCCCGAGCCGAACACCTCGCGGCCCTTGCCCTCGGCGACCAACAACGAGCCT TCGATGCGGTCGAGACCCTCATCGGATGCCTCAGCGACGACCACCAGCTCGCGCAGCTCACCGACGCGGGACTCTGCCAC GGCTGGGCCGGCCTCCTCCTGACCGCTCATCGGGCCGCCGCCGACACCAGCACCGGCGAACTCTCCGCCGCCCTGCACGC CGCCGAAACACACAGGCACCGGTACCTCCGCGGCAACAGCGACCCCACCGCCGCGGGTTTCTTAGACGGCGCGGCTGGCA TCGCACTCGCCCATGCCGCCCTGAAGATCACATCCGGCTCGGCGCTGCCAGACTGGGACCGCTGCCTGTTGATCAACTAG
Upstream 100 bases:
>100_bases ACCGCGCCAGACTCATCGATCGTGCTGACGAGGCCACCTGCCGGCGCCTGGCCCGGCAGATCGCCCTCACCCGACGCGCA CACACCACGGCGGACAGCCC
Downstream 100 bases:
>100_bases CAGTCGGTTACCCGGCCGAGGCCGCTGTCACCACCACGCCCTCTGCCGCTGTGAAGGAGACTGATGGACACCACCGCAGC CACATCACCAGGCACGCTGC
Product: lanthionine synthetase C family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 399; Mature: 398
Protein sequence:
>399_residues MTTLSRLPTVPDLGDAESARWAQSLGDGAPGIALAHIARARAGLDGWEPVHRLAAAMTRSPLNAHPDTASLYQGAPAVAY ALHIAGHRAYDAALATLDEAIATVIRRRLEAAHRRIDHEQLPHAGEYDLINGLTGLGALLLHHDRESALLRDVLAYLVRL TRPIRVDGRDLPGWWATGSPDRRASARWNAGHAGFGMAHGIAGPLALLAITMRRGIAVAGHVDALHNIIAWLDQWRRGQR RTGWWPEAIDHDELRTGSAASPGPPRPSWCYGSPGIARAEHLAALALGDQQRAFDAVETLIGCLSDDHQLAQLTDAGLCH GWAGLLLTAHRAAADTSTGELSAALHAAETHRHRYLRGNSDPTAAGFLDGAAGIALAHAALKITSGSALPDWDRCLLIN
Sequences:
>Translated_399_residues MTTLSRLPTVPDLGDAESARWAQSLGDGAPGIALAHIARARAGLDGWEPVHRLAAAMTRSPLNAHPDTASLYQGAPAVAY ALHIAGHRAYDAALATLDEAIATVIRRRLEAAHRRIDHEQLPHAGEYDLINGLTGLGALLLHHDRESALLRDVLAYLVRL TRPIRVDGRDLPGWWATGSPDRRASARWNAGHAGFGMAHGIAGPLALLAITMRRGIAVAGHVDALHNIIAWLDQWRRGQR RTGWWPEAIDHDELRTGSAASPGPPRPSWCYGSPGIARAEHLAALALGDQQRAFDAVETLIGCLSDDHQLAQLTDAGLCH GWAGLLLTAHRAAADTSTGELSAALHAAETHRHRYLRGNSDPTAAGFLDGAAGIALAHAALKITSGSALPDWDRCLLIN >Mature_398_residues TTLSRLPTVPDLGDAESARWAQSLGDGAPGIALAHIARARAGLDGWEPVHRLAAAMTRSPLNAHPDTASLYQGAPAVAYA LHIAGHRAYDAALATLDEAIATVIRRRLEAAHRRIDHEQLPHAGEYDLINGLTGLGALLLHHDRESALLRDVLAYLVRLT RPIRVDGRDLPGWWATGSPDRRASARWNAGHAGFGMAHGIAGPLALLAITMRRGIAVAGHVDALHNIIAWLDQWRRGQRR TGWWPEAIDHDELRTGSAASPGPPRPSWCYGSPGIARAEHLAALALGDQQRAFDAVETLIGCLSDDHQLAQLTDAGLCHG WAGLLLTAHRAAADTSTGELSAALHAAETHRHRYLRGNSDPTAAGFLDGAAGIALAHAALKITSGSALPDWDRCLLIN
Specific function: Could be implicated in the processing or the export process of the subtilin lantibiotic [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To S.epidermidis epiC and L.lactis nisC [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007822 - InterPro: IPR020452 [H]
Pfam domain/function: PF05147 LANC_like [H]
EC number: NA
Molecular weight: Translated: 42561; Mature: 42430
Theoretical pI: Translated: 7.15; Mature: 7.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTLSRLPTVPDLGDAESARWAQSLGDGAPGIALAHIARARAGLDGWEPVHRLAAAMTRS CCCCHHCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC PLNAHPDTASLYQGAPAVAYALHIAGHRAYDAALATLDEAIATVIRRRLEAAHRRIDHEQ CCCCCCCHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH LPHAGEYDLINGLTGLGALLLHHDRESALLRDVLAYLVRLTRPIRVDGRDLPGWWATGSP CCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCC DRRASARWNAGHAGFGMAHGIAGPLALLAITMRRGIAVAGHVDALHNIIAWLDQWRRGQR CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHCCCC RTGWWPEAIDHDELRTGSAASPGPPRPSWCYGSPGIARAEHLAALALGDQQRAFDAVETL CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH IGCLSDDHQLAQLTDAGLCHGWAGLLLTAHRAAADTSTGELSAALHAAETHRHRYLRGNS HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC DPTAAGFLDGAAGIALAHAALKITSGSALPDWDRCLLIN CCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCEEECC >Mature Secondary Structure TTLSRLPTVPDLGDAESARWAQSLGDGAPGIALAHIARARAGLDGWEPVHRLAAAMTRS CCCHHCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC PLNAHPDTASLYQGAPAVAYALHIAGHRAYDAALATLDEAIATVIRRRLEAAHRRIDHEQ CCCCCCCHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH LPHAGEYDLINGLTGLGALLLHHDRESALLRDVLAYLVRLTRPIRVDGRDLPGWWATGSP CCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCC DRRASARWNAGHAGFGMAHGIAGPLALLAITMRRGIAVAGHVDALHNIIAWLDQWRRGQR CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHCCCC RTGWWPEAIDHDELRTGSAASPGPPRPSWCYGSPGIARAEHLAALALGDQQRAFDAVETL CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH IGCLSDDHQLAQLTDAGLCHGWAGLLLTAHRAAADTSTGELSAALHAAETHRHRYLRGNS HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC DPTAAGFLDGAAGIALAHAALKITSGSALPDWDRCLLIN CCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1539969; 1735728 [H]