| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is idnO [C]
Identifier: 158314540
GI number: 158314540
Start: 3214588
End: 3215385
Strand: Direct
Name: idnO [C]
Synonym: Franean1_2716
Alternate gene names: 158314540
Gene position: 3214588-3215385 (Clockwise)
Preceding gene: 158314539
Following gene: 158314542
Centisome position: 35.79
GC content: 69.42
Gene sequence:
>798_bases GTGGGAAATCCGTTCAGCTACCAGGACAAGCGGGTCGTCGTCACTGGCGGTGCCTCCGGCATCGGCGCCGCTCTGCTCGA CCTTCTCGGCGAGCTCGGCACGCCGCACCTCACAGTGATCGACCGGCAGCCGCCCACCGCTCGGGTGGACCACTTCGTGG AGGCCGACCTGTCCTCCCGGGCAGGCGTCGACGCCGCCGCGGCGGCGGTCAGAGGTCCGGTGGACGTCCTGTTCAACAAC GCCGGCGTCGCCGGCACGCAGCCCGCACGGGTGGTTTTCAGCGTCAACTATTTGGCGGTCCGGCGGCTGTCAGAGCAGCT CGCGGGACGGATGCCGGCCGGTGGGGCCGTCGTCATCACCTCGTCGATGGCGGGGATCGGCTGGCAGGCGCACCAGGACG AGCTGGGCAAGCTGATGACGATCGACGACTGGGACGAAGCGCTCACCTGGCTGGACGCACACCCCGAGCGCGCCAGCGAC CCGTACGCATTGTCCAAGGAATGCACCCAGCTCTACACGCTCCATGCTGCCCGCGTGGCCAGCCGGGCGGGGACCAGGAT CAACAGTGCCTGTCCTGGTGCCACGAGCACGCCGCTGCTGGGGGACTTCCGGTTGACGATGACCGACGAGATCATCGACT GGTCGGTCCGCCAGGGCATCGGACGGCCGGCCACGCCTCGCGAGGTCGCGCAGATCCTCGCGTTTCTCGGCTCGGACGCC GCCGGCTACCTCAACGGAGTGAACCTCCCGGTGGATGCGGGCCTGCAGGCGGCTCTCGCGACAGGCCAGACCGACTAG
Upstream 100 bases:
>100_bases GCGAGCTGGGAGTCCTCGACCTGCTGTCGGCCTGACCGCCACCGCGCGCCAGACCGGGACCCGACGGCGCCGTCACCACC CCTGTCACGATGGAGATCTC
Downstream 100 bases:
>100_bases TGCCGAGGCCTGCAACCGGAACCCGGGCTACTTCCGGGAGCACCCGAGGGACGTGTTCGGCGAGCACGTGTGGATCATGC TCGAGCATGCGGATCTCGCT
Product: short-chain dehydrogenase/reductase SDR
Products: D-Gluconate; Nicotinamide adenine dinucleotide phosphate [C]
Alternate protein names: Short-Chain Dehydrogenase/Reductase SDR; NAD-Dependent Epimerase/Dehydratase; Oxidoreductase; Dehydrogenase/Reductase; 3-Oxoacyl-(Acyl-Carrier-Protein) Reductase; Short-Chain Type Dehydrogenase/Reductase; Oxidoreductase Short-Chain Dehydrogenase/Reductase Family; Oxidoreductase Short Chain Dehydrogenase/Reductase Family
Number of amino acids: Translated: 265; Mature: 264
Protein sequence:
>265_residues MGNPFSYQDKRVVVTGGASGIGAALLDLLGELGTPHLTVIDRQPPTARVDHFVEADLSSRAGVDAAAAAVRGPVDVLFNN AGVAGTQPARVVFSVNYLAVRRLSEQLAGRMPAGGAVVITSSMAGIGWQAHQDELGKLMTIDDWDEALTWLDAHPERASD PYALSKECTQLYTLHAARVASRAGTRINSACPGATSTPLLGDFRLTMTDEIIDWSVRQGIGRPATPREVAQILAFLGSDA AGYLNGVNLPVDAGLQAALATGQTD
Sequences:
>Translated_265_residues MGNPFSYQDKRVVVTGGASGIGAALLDLLGELGTPHLTVIDRQPPTARVDHFVEADLSSRAGVDAAAAAVRGPVDVLFNN AGVAGTQPARVVFSVNYLAVRRLSEQLAGRMPAGGAVVITSSMAGIGWQAHQDELGKLMTIDDWDEALTWLDAHPERASD PYALSKECTQLYTLHAARVASRAGTRINSACPGATSTPLLGDFRLTMTDEIIDWSVRQGIGRPATPREVAQILAFLGSDA AGYLNGVNLPVDAGLQAALATGQTD >Mature_264_residues GNPFSYQDKRVVVTGGASGIGAALLDLLGELGTPHLTVIDRQPPTARVDHFVEADLSSRAGVDAAAAAVRGPVDVLFNNA GVAGTQPARVVFSVNYLAVRRLSEQLAGRMPAGGAVVITSSMAGIGWQAHQDELGKLMTIDDWDEALTWLDAHPERASDP YALSKECTQLYTLHAARVASRAGTRINSACPGATSTPLLGDFRLTMTDEIIDWSVRQGIGRPATPREVAQILAFLGSDAA GYLNGVNLPVDAGLQAALATGQTD
Specific function: Catalyzes A Reversible Reduction Of 5-Ketoglutanate To Form D-Gluconate. Dependent On Nadp, Almost Inactive With NAD. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 1.1.1.69 [C]
Molecular weight: Translated: 27773; Mature: 27641
Theoretical pI: Translated: 4.88; Mature: 4.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGNPFSYQDKRVVVTGGASGIGAALLDLLGELGTPHLTVIDRQPPTARVDHFVEADLSSR CCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCHHC AGVDAAAAAVRGPVDVLFNNAGVAGTQPARVVFSVNYLAVRRLSEQLAGRMPAGGAVVIT CCCHHHHHHHCCCHHEEECCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCEEEEE SSMAGIGWQAHQDELGKLMTIDDWDEALTWLDAHPERASDPYALSKECTQLYTLHAARVA CCCCCCCCCCCHHHHCCEEEECCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH SRAGTRINSACPGATSTPLLGDFRLTMTDEIIDWSVRQGIGRPATPREVAQILAFLGSDA HHCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC AGYLNGVNLPVDAGLQAALATGQTD HHHHCCCCCCCCCCCHHHHHCCCCC >Mature Secondary Structure GNPFSYQDKRVVVTGGASGIGAALLDLLGELGTPHLTVIDRQPPTARVDHFVEADLSSR CCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCHHC AGVDAAAAAVRGPVDVLFNNAGVAGTQPARVVFSVNYLAVRRLSEQLAGRMPAGGAVVIT CCCHHHHHHHCCCHHEEECCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCEEEEE SSMAGIGWQAHQDELGKLMTIDDWDEALTWLDAHPERASDPYALSKECTQLYTLHAARVA CCCCCCCCCCCHHHHCCEEEECCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH SRAGTRINSACPGATSTPLLGDFRLTMTDEIIDWSVRQGIGRPATPREVAQILAFLGSDA HHCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC AGYLNGVNLPVDAGLQAALATGQTD HHHHCCCCCCCCCCCHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NAD+; NADH; NADP+; NADPH [C]
Metal ions: Mn2+ [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): 0.006 {NADPH}} 0.9 {5-keto-D-gluconate}} 0.02 {NADP+}} 20 {D-gluconate}} [C]
Substrates: 5-Dehydro-D-gluconate; H+; Nicotinamide adenine dinucleotide phosphate - reduced [C]
Specific reaction: 5-Dehydro-D-gluconate + H+ + Nicotinamide adenine dinucleotide phosphate - reduced <==> D-Gluconate + Nicotinamide adenine dinucleotide phosphate [C]
General reaction: Redox reaction [C]
Inhibitor: Cd2+; Cs2+; Cu2+; Divalent metal ions; Hg2+; Ni2+; p-Chloromercuribenzoate; Sn2+; Sulfhydryl reagents [C]
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA