| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is 158314504
Identifier: 158314504
GI number: 158314504
Start: 3170627
End: 3171685
Strand: Direct
Name: 158314504
Synonym: Franean1_2680
Alternate gene names: NA
Gene position: 3170627-3171685 (Clockwise)
Preceding gene: 158314503
Following gene: 158314505
Centisome position: 35.3
GC content: 68.93
Gene sequence:
>1059_bases ATGAGCGCGCGGTATGTTGTGCGGCCCGTGGGCCGCGACGAACTGCGGTGGCACGACGAGTTGCCAGCCGATCCGGCGTC GCTGGTCGACCTGTTCTGGCTCGACGGCGATCTGGAGAACGGCTACCAGATCGGGATCGGCTTGATCCGCTGCCGCCCGC TCGCCGACGGGCTTCCGGCCGTCACCATCAAGATCCTCCCGCCGGACGGCGACGTCCTGGAAGTGAACGAGACCTTCGAA CCGGAGGACTTCGACGGCGACGCGTTCGGCGGCCGATGGGGCGACCGTAATCGCATCGTCGGGGAGTTCGACGCCAACGG GCGGCCAACGGGATACCGGCTCGTCCTGTCGGTCGGCGGCATCGAGGTCGACGTGGCCTGCCGCGCCGTCTGCACAGGCG CGAAATTCGTCGACGCGTCGCCGGGCTACACGGCCTACGACCCCGTCCAGCGGCACGCGGCCGGGTGGTGGCCGCTGATC CCACGGGCCACCTCGACCGGGCACATCACGGTCCGCGGCCTCCCGGTCGACGGTACCGGGGCGTTCCACCTCGAGCGGCA GGTCTCGTCCTTCCCCTTGGGGGGCAGTGACGGGGAGAAATCCGCCCAGTCCATCTGGACCTGGGGGCACTTCTATGCCG GCGACTACACCGCCGTCTGGACGGACTCCGGGGCGTCTGCGCAGTTCGGGTACCGCCACTTCACCCCGTTCCTGCTCTGG CGGGGCTCCGAACTGGTCCTGAGCACGTTCGCCTTCGCCAGCTATGTCGAACGATTCACGATCAACCCGCGGACGGGGTT GGCGATGCCCGCGGTGACGACTCTGAAGGCAGCGGACGGTGGCACGGAGTTCTTCGCGCGCCTGCTGTCGCCGCGGAACT CCGAGCACGTCGTGCTCAACAACAAGCCTGGTTCGCTCTACAGCCGGCAGCTCAGCGAGGTGCAGGCCCGGTTGGACGGC CCCGGCGGCACCGAGCGGCTCACCGGCCGCGCGGTACATGAGTGGGGCACGCAGGCGGGAAACTTTCCCTTCCTCACGGC AACTCCCGAGCGGCCATGA
Upstream 100 bases:
>100_bases CTTCGACGCCGCCGACCGGCGGCGCATCATGCGCGACAACGCCGCGGCGCTGACCGCTGCCCCACGCTGACCGACCACAT CCCATCGCGAGAGGAGTCGC
Downstream 100 bases:
>100_bases CGGGCACGGGGCTGACCGACTCCTACTGGCCTGCACACGACGAGCTGCCCCTGCTCGCCGGGTCGATCGGCACATTGCTG CGTGAGCGAGCCGCAGACCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 352; Mature: 351
Protein sequence:
>352_residues MSARYVVRPVGRDELRWHDELPADPASLVDLFWLDGDLENGYQIGIGLIRCRPLADGLPAVTIKILPPDGDVLEVNETFE PEDFDGDAFGGRWGDRNRIVGEFDANGRPTGYRLVLSVGGIEVDVACRAVCTGAKFVDASPGYTAYDPVQRHAAGWWPLI PRATSTGHITVRGLPVDGTGAFHLERQVSSFPLGGSDGEKSAQSIWTWGHFYAGDYTAVWTDSGASAQFGYRHFTPFLLW RGSELVLSTFAFASYVERFTINPRTGLAMPAVTTLKAADGGTEFFARLLSPRNSEHVVLNNKPGSLYSRQLSEVQARLDG PGGTERLTGRAVHEWGTQAGNFPFLTATPERP
Sequences:
>Translated_352_residues MSARYVVRPVGRDELRWHDELPADPASLVDLFWLDGDLENGYQIGIGLIRCRPLADGLPAVTIKILPPDGDVLEVNETFE PEDFDGDAFGGRWGDRNRIVGEFDANGRPTGYRLVLSVGGIEVDVACRAVCTGAKFVDASPGYTAYDPVQRHAAGWWPLI PRATSTGHITVRGLPVDGTGAFHLERQVSSFPLGGSDGEKSAQSIWTWGHFYAGDYTAVWTDSGASAQFGYRHFTPFLLW RGSELVLSTFAFASYVERFTINPRTGLAMPAVTTLKAADGGTEFFARLLSPRNSEHVVLNNKPGSLYSRQLSEVQARLDG PGGTERLTGRAVHEWGTQAGNFPFLTATPERP >Mature_351_residues SARYVVRPVGRDELRWHDELPADPASLVDLFWLDGDLENGYQIGIGLIRCRPLADGLPAVTIKILPPDGDVLEVNETFEP EDFDGDAFGGRWGDRNRIVGEFDANGRPTGYRLVLSVGGIEVDVACRAVCTGAKFVDASPGYTAYDPVQRHAAGWWPLIP RATSTGHITVRGLPVDGTGAFHLERQVSSFPLGGSDGEKSAQSIWTWGHFYAGDYTAVWTDSGASAQFGYRHFTPFLLWR GSELVLSTFAFASYVERFTINPRTGLAMPAVTTLKAADGGTEFFARLLSPRNSEHVVLNNKPGSLYSRQLSEVQARLDGP GGTERLTGRAVHEWGTQAGNFPFLTATPERP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38430; Mature: 38299
Theoretical pI: Translated: 5.22; Mature: 5.22
Prosite motif: PS01039 SBP_BACTERIAL_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSARYVVRPVGRDELRWHDELPADPASLVDLFWLDGDLENGYQIGIGLIRCRPLADGLPA CCCCEEEECCCCCCCCCCCCCCCCHHHEEEEEEECCCCCCCEEEEEEEEEEEECCCCCCE VTIKILPPDGDVLEVNETFEPEDFDGDAFGGRWGDRNRIVGEFDANGRPTGYRLVLSVGG EEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECC IEVDVACRAVCTGAKFVDASPGYTAYDPVQRHAAGWWPLIPRATSTGHITVRGLPVDGTG EEEEEEEHHHCCCCEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCC AFHLERQVSSFPLGGSDGEKSAQSIWTWGHFYAGDYTAVWTDSGASAQFGYRHFTPFLLW CEEEEEHHHHCCCCCCCCCHHHHHHCCCEEEECCCEEEEEECCCCCCCCCHHHCCEEEEE RGSELVLSTFAFASYVERFTINPRTGLAMPAVTTLKAADGGTEFFARLLSPRNSEHVVLN CCCHHHHHHHHHHHHHHHEECCCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCEEEEE NKPGSLYSRQLSEVQARLDGPGGTERLTGRAVHEWGTQAGNFPFLTATPERP CCCCHHHHHHHHHHHHHCCCCCCCCHHCCHHHHHHCCCCCCCCEEECCCCCC >Mature Secondary Structure SARYVVRPVGRDELRWHDELPADPASLVDLFWLDGDLENGYQIGIGLIRCRPLADGLPA CCCEEEECCCCCCCCCCCCCCCCHHHEEEEEEECCCCCCCEEEEEEEEEEEECCCCCCE VTIKILPPDGDVLEVNETFEPEDFDGDAFGGRWGDRNRIVGEFDANGRPTGYRLVLSVGG EEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECC IEVDVACRAVCTGAKFVDASPGYTAYDPVQRHAAGWWPLIPRATSTGHITVRGLPVDGTG EEEEEEEHHHCCCCEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCC AFHLERQVSSFPLGGSDGEKSAQSIWTWGHFYAGDYTAVWTDSGASAQFGYRHFTPFLLW CEEEEEHHHHCCCCCCCCCHHHHHHCCCEEEECCCEEEEEECCCCCCCCCHHHCCEEEEE RGSELVLSTFAFASYVERFTINPRTGLAMPAVTTLKAADGGTEFFARLLSPRNSEHVVLN CCCHHHHHHHHHHHHHHHEECCCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCEEEEE NKPGSLYSRQLSEVQARLDGPGGTERLTGRAVHEWGTQAGNFPFLTATPERP CCCCHHHHHHHHHHHHHCCCCCCCCHHCCHHHHHHCCCCCCCCEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA