| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158314377
Identifier: 158314377
GI number: 158314377
Start: 3030879
End: 3033377
Strand: Direct
Name: 158314377
Synonym: Franean1_2549
Alternate gene names: NA
Gene position: 3030879-3033377 (Clockwise)
Preceding gene: 158314376
Following gene: 158314378
Centisome position: 33.74
GC content: 73.43
Gene sequence:
>2499_bases ATGGACCTGCTCGTCGCGGCGACCGCCACGCCGTCGTCGCCGCGCACCACCTACCTGACCGACCCCGCCGGCTTTCTCCA CCAGATCCTCGGCCAGCTCCAGGGGTGGGCAACGGTCTGGGGACCCGTCGCGGGCCCGCTGCTCACCCTTACCGCCGCCG GGCTGCTCACTCTGCGCCGGCGGATGCGCCGCCGCTACCAGCAGCGGCTGACCGCCGGCGCCCGCCTCGTGACCGTGTTG GCCCCGCCCACCGTCGACCCGGCGGGCGCGACCGCGCTGTGGTCGAACCTGCTCGGCCTGCTCCGCCCCGGCTGGCGGCG CCTGTTCGGCCAGCCGCACCTGCTGTGGGAGTACCAGTTCACCGCCGACGGGGTCCGTATCCAGATCTGGGTGCCCGGCG TCGTCCCCGATGGGTTCGTTGAACGCGCCATCGAGGCGGCCTGGCCTGGCGCTCACACCCGCACCACGCCCGCCCGCGCG CCGCTGCCCGTCGTCGCCCGGCCGGGTCGGCGGCTGCTCGCTGCCGGCGGCGAACTGCGCCTGGCCCGCCCCGAAGCACT CCCGATCCGGATCGACCACGACGCCGACCCGATCCGCGCCCTGCTCGGCGCGCCCGGCAGCCTCGCCCGCAACCAACGGG CGGCCGTGCAGATCCTGGCCCGGCCGGTCACCGGCCGCCGCGTCGCGAAATCCCGCCGGGCCGCCCGCCGGCTGCGCTCC GGCGGCTCCGCGCACCTGATCGGCGGGCTGCTGGACCTACTCACTCCCCACACCGGCCGCACCCGGCGGCGCCACCGGAC GGCGACCACCACGGTGAAGGTCGACCCGCAGACGTCGCTGGCCCTGTCCGCGGAAGACCGCGCCATCGTCACCAAGCAGC GAGGGGCCCAGTACGAGGTCCGCGTCCGCTACGCCATCGCCGCGATCCTCGACGAGCACACCGACGACACCACCGCCGCC CAGGTGGCGAGCCAGCTACGCGGCCGGGCGCACGCCATCGCGTCGGCGTTCTCCGCCTACGGCGAGCACAACTACTACCG CCGCGTCCGGCTCCGCCGCCCGCTGCCCGTCCTCGCCACCCGGCAGTTCGGCCGTGGCGACCTGCTCTCGGTCGCCGAAC TCGGCGCGCTGGCCCACCTGCCGGTCGACGAGGCGACCCCTGGCCTGCAACGCGCCGGTGCGAAGGCGGTCGCCCCGCCG CCCGGCGTCGCCGGCCACGGTCCGAACGTCCGCCCGATTGGGCGCACCGACGCCGGTCACGCGCGTCCGGTTGGTCTGCG GGTCCCGGACGCCCGTCATCACCTGCACGTCCTCGGCGCGACCGGCGCCGGCAAGTCCGAACTGCTCGCCCGCATGACCC TCGACGACGTCGCCGCGCACCGAGGCGTGGTCAATGTCGACCCGAAGGGCGACCAGATCATCGACATTCTCGCCCGCTAC CCCCTCGACGCCCTCGACCGCCTCGTCCTGTTCGACGCTGAGTCGTCCAGCCGGCCGCCGTGCCTGAACCCGCTGGATCA GCCCGACCGGGGACGGGCTGTCGACAACCTCGTCTCGATCTTCAGTCGGGTGTATGCCGACTCGTGGGGGCCGCGCACCG AGGACATCTTCCGCGCCGGCCTGCTCACCCTCGCCGCCCAACCCGGTGTCCCCGTCCTGACTGACCTACCGAAACTGCTC ACCGACACCGCCTATAGGCACCGGGCGCTCGGTGAGATCGACGACGACATCCTGGCCGGCTTCTGGACCTGGTACGAAGC TCTCTCCGACGCCGCCCGCGGTCACGTCGTCGCCCCGCTCATGAACAAACTCCGGGGCTTTCTGCTGCGGCCGTTCGTGC GGGCCGCGATCGCCGCCGGCCCCTCCACCGTCGACATGGACAACGTGTTGAACGACGGCGGGGTGTGCCTGGTCCGCATC GCCCAGGACGCCCTCGGTGTCGAGACCGCGGCACTGATGGGCTCCATCGTCGTCTCCGCCGTCTGGCAGTCCACCACCCG CCGCGCCCGCCTACCCCAGGGGAAAAGGCCCGACGCCAGCCTGTACTTGGACGAGGCACACCATTTCCTCACGCTTCCGT ACGCGTTGGAAGACATGCTCGCCGCCGCCCGTGGCTACCGGCTCGGGATCACCCTGGCGCACCAGAACCTTGTCCAGCTG CCTCGGCATCTGGAAGAAAGCATCGGCGCCAACGCCCGCTCGAAGATCTATTTCACGGTGAGCCCGGCGGACGCCAAGCG CCTCGCCCGGCACACCGAGCCCCGGCTCGCCGAGCACGACCTGGCCAACCTCGGCGTGTTCCACGCCGCCGCCCGCCTCG TCGTCGGCGGAGAAGAAGCCCCCGCCTTCACCCTCGTCACGGAGAAACTGCCCCCGCCAGTACCCGGCCGCGCCGTCCAG ATCCGCCGGGCCTTGCGCCGCCGCGCCGCCACCCCCGCCGCGCCGGCTCCCACCGGTCCGGGTCCGCGGCCCACCTCCGA CCCGCGTCGCGTCGCCTGA
Upstream 100 bases:
>100_bases CTTCGACCTCGCCGCGCCCGCTGGCCCGGCCGATGACGACGGCCAGATCTACCTCGACGCCGCCTGACCAGCACGCCGCA CCCGAAGGGAGATCGTAACC
Downstream 100 bases:
>100_bases CCGTGCGCTTCGCTGCCACCTCGAAGGACTTCCCGATGGCCAAACCGCTGCCGCAGCGCGCCCTGCGCGTCCCGTTGCGT CCCGCCGCCCGCGTCGTCGC
Product: hypothetical protein
Products: NA
Alternate protein names: Type IV Secretory Pathway VirD4 Components-Like Protein; ATPase; Type Iv Secretory Pathway Vird4 Protein-Like Protein; Conjugation Protein; TraG Protein
Number of amino acids: Translated: 832; Mature: 832
Protein sequence:
>832_residues MDLLVAATATPSSPRTTYLTDPAGFLHQILGQLQGWATVWGPVAGPLLTLTAAGLLTLRRRMRRRYQQRLTAGARLVTVL APPTVDPAGATALWSNLLGLLRPGWRRLFGQPHLLWEYQFTADGVRIQIWVPGVVPDGFVERAIEAAWPGAHTRTTPARA PLPVVARPGRRLLAAGGELRLARPEALPIRIDHDADPIRALLGAPGSLARNQRAAVQILARPVTGRRVAKSRRAARRLRS GGSAHLIGGLLDLLTPHTGRTRRRHRTATTTVKVDPQTSLALSAEDRAIVTKQRGAQYEVRVRYAIAAILDEHTDDTTAA QVASQLRGRAHAIASAFSAYGEHNYYRRVRLRRPLPVLATRQFGRGDLLSVAELGALAHLPVDEATPGLQRAGAKAVAPP PGVAGHGPNVRPIGRTDAGHARPVGLRVPDARHHLHVLGATGAGKSELLARMTLDDVAAHRGVVNVDPKGDQIIDILARY PLDALDRLVLFDAESSSRPPCLNPLDQPDRGRAVDNLVSIFSRVYADSWGPRTEDIFRAGLLTLAAQPGVPVLTDLPKLL TDTAYRHRALGEIDDDILAGFWTWYEALSDAARGHVVAPLMNKLRGFLLRPFVRAAIAAGPSTVDMDNVLNDGGVCLVRI AQDALGVETAALMGSIVVSAVWQSTTRRARLPQGKRPDASLYLDEAHHFLTLPYALEDMLAAARGYRLGITLAHQNLVQL PRHLEESIGANARSKIYFTVSPADAKRLARHTEPRLAEHDLANLGVFHAAARLVVGGEEAPAFTLVTEKLPPPVPGRAVQ IRRALRRRAATPAAPAPTGPGPRPTSDPRRVA
Sequences:
>Translated_832_residues MDLLVAATATPSSPRTTYLTDPAGFLHQILGQLQGWATVWGPVAGPLLTLTAAGLLTLRRRMRRRYQQRLTAGARLVTVL APPTVDPAGATALWSNLLGLLRPGWRRLFGQPHLLWEYQFTADGVRIQIWVPGVVPDGFVERAIEAAWPGAHTRTTPARA PLPVVARPGRRLLAAGGELRLARPEALPIRIDHDADPIRALLGAPGSLARNQRAAVQILARPVTGRRVAKSRRAARRLRS GGSAHLIGGLLDLLTPHTGRTRRRHRTATTTVKVDPQTSLALSAEDRAIVTKQRGAQYEVRVRYAIAAILDEHTDDTTAA QVASQLRGRAHAIASAFSAYGEHNYYRRVRLRRPLPVLATRQFGRGDLLSVAELGALAHLPVDEATPGLQRAGAKAVAPP PGVAGHGPNVRPIGRTDAGHARPVGLRVPDARHHLHVLGATGAGKSELLARMTLDDVAAHRGVVNVDPKGDQIIDILARY PLDALDRLVLFDAESSSRPPCLNPLDQPDRGRAVDNLVSIFSRVYADSWGPRTEDIFRAGLLTLAAQPGVPVLTDLPKLL TDTAYRHRALGEIDDDILAGFWTWYEALSDAARGHVVAPLMNKLRGFLLRPFVRAAIAAGPSTVDMDNVLNDGGVCLVRI AQDALGVETAALMGSIVVSAVWQSTTRRARLPQGKRPDASLYLDEAHHFLTLPYALEDMLAAARGYRLGITLAHQNLVQL PRHLEESIGANARSKIYFTVSPADAKRLARHTEPRLAEHDLANLGVFHAAARLVVGGEEAPAFTLVTEKLPPPVPGRAVQ IRRALRRRAATPAAPAPTGPGPRPTSDPRRVA >Mature_832_residues MDLLVAATATPSSPRTTYLTDPAGFLHQILGQLQGWATVWGPVAGPLLTLTAAGLLTLRRRMRRRYQQRLTAGARLVTVL APPTVDPAGATALWSNLLGLLRPGWRRLFGQPHLLWEYQFTADGVRIQIWVPGVVPDGFVERAIEAAWPGAHTRTTPARA PLPVVARPGRRLLAAGGELRLARPEALPIRIDHDADPIRALLGAPGSLARNQRAAVQILARPVTGRRVAKSRRAARRLRS GGSAHLIGGLLDLLTPHTGRTRRRHRTATTTVKVDPQTSLALSAEDRAIVTKQRGAQYEVRVRYAIAAILDEHTDDTTAA QVASQLRGRAHAIASAFSAYGEHNYYRRVRLRRPLPVLATRQFGRGDLLSVAELGALAHLPVDEATPGLQRAGAKAVAPP PGVAGHGPNVRPIGRTDAGHARPVGLRVPDARHHLHVLGATGAGKSELLARMTLDDVAAHRGVVNVDPKGDQIIDILARY PLDALDRLVLFDAESSSRPPCLNPLDQPDRGRAVDNLVSIFSRVYADSWGPRTEDIFRAGLLTLAAQPGVPVLTDLPKLL TDTAYRHRALGEIDDDILAGFWTWYEALSDAARGHVVAPLMNKLRGFLLRPFVRAAIAAGPSTVDMDNVLNDGGVCLVRI AQDALGVETAALMGSIVVSAVWQSTTRRARLPQGKRPDASLYLDEAHHFLTLPYALEDMLAAARGYRLGITLAHQNLVQL PRHLEESIGANARSKIYFTVSPADAKRLARHTEPRLAEHDLANLGVFHAAARLVVGGEEAPAFTLVTEKLPPPVPGRAVQ IRRALRRRAATPAAPAPTGPGPRPTSDPRRVA
Specific function: Unknown
COG id: COG0433
COG function: function code R; Predicted ATPase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 89867; Mature: 89867
Theoretical pI: Translated: 11.36; Mature: 11.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLLVAATATPSSPRTTYLTDPAGFLHQILGQLQGWATVWGPVAGPLLTLTAAGLLTLRR CCEEEEECCCCCCCCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH RMRRRYQQRLTAGARLVTVLAPPTVDPAGATALWSNLLGLLRPGWRRLFGQPHLLWEYQF HHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCHHHHHHCCCCCEEEEEEE TADGVRIQIWVPGVVPDGFVERAIEAAWPGAHTRTTPARAPLPVVARPGRRLLAAGGELR ECCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCEEEECCCCEE LARPEALPIRIDHDADPIRALLGAPGSLARNQRAAVQILARPVTGRRVAKSRRAARRLRS EECCCCEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC GGSAHLIGGLLDLLTPHTGRTRRRHRTATTTVKVDPQTSLALSAEDRAIVTKQRGAQYEV CCCHHHHHHHHHHHCCCCCCHHHHHCCEEEEEEECCCCCEEECCCCCEEEECCCCCCEEE RVRYAIAAILDEHTDDTTAAQVASQLRGRAHAIASAFSAYGEHNYYRRVRLRRPLPVLAT EHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHH RQFGRGDLLSVAELGALAHLPVDEATPGLQRAGAKAVAPPPGVAGHGPNVRPIGRTDAGH CCCCCCCHHHHHHHCHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ARPVGLRVPDARHHLHVLGATGAGKSELLARMTLDDVAAHRGVVNVDPKGDQIIDILARY CCCCCEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHC PLDALDRLVLFDAESSSRPPCLNPLDQPDRGRAVDNLVSIFSRVYADSWGPRTEDIFRAG CHHHHCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHH LLTLAAQPGVPVLTDLPKLLTDTAYRHRALGEIDDDILAGFWTWYEALSDAARGHVVAPL HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHH MNKLRGFLLRPFVRAAIAAGPSTVDMDNVLNDGGVCLVRIAQDALGVETAALMGSIVVSA HHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHH VWQSTTRRARLPQGKRPDASLYLDEAHHFLTLPYALEDMLAAARGYRLGITLAHQNLVQL HHHHHHHHHCCCCCCCCCCCEEEECCCCEEECHHHHHHHHHHHCCCEEEEEEHHHHHHHH PRHLEESIGANARSKIYFTVSPADAKRLARHTEPRLAEHDLANLGVFHAAARLVVGGEEA HHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEECCCCC PAFTLVTEKLPPPVPGRAVQIRRALRRRAATPAAPAPTGPGPRPTSDPRRVA CEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MDLLVAATATPSSPRTTYLTDPAGFLHQILGQLQGWATVWGPVAGPLLTLTAAGLLTLRR CCEEEEECCCCCCCCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH RMRRRYQQRLTAGARLVTVLAPPTVDPAGATALWSNLLGLLRPGWRRLFGQPHLLWEYQF HHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCHHHHHHCCCCCEEEEEEE TADGVRIQIWVPGVVPDGFVERAIEAAWPGAHTRTTPARAPLPVVARPGRRLLAAGGELR ECCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCEEEECCCCEE LARPEALPIRIDHDADPIRALLGAPGSLARNQRAAVQILARPVTGRRVAKSRRAARRLRS EECCCCEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC GGSAHLIGGLLDLLTPHTGRTRRRHRTATTTVKVDPQTSLALSAEDRAIVTKQRGAQYEV CCCHHHHHHHHHHHCCCCCCHHHHHCCEEEEEEECCCCCEEECCCCCEEEECCCCCCEEE RVRYAIAAILDEHTDDTTAAQVASQLRGRAHAIASAFSAYGEHNYYRRVRLRRPLPVLAT EHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHH RQFGRGDLLSVAELGALAHLPVDEATPGLQRAGAKAVAPPPGVAGHGPNVRPIGRTDAGH CCCCCCCHHHHHHHCHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ARPVGLRVPDARHHLHVLGATGAGKSELLARMTLDDVAAHRGVVNVDPKGDQIIDILARY CCCCCEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHC PLDALDRLVLFDAESSSRPPCLNPLDQPDRGRAVDNLVSIFSRVYADSWGPRTEDIFRAG CHHHHCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHH LLTLAAQPGVPVLTDLPKLLTDTAYRHRALGEIDDDILAGFWTWYEALSDAARGHVVAPL HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHH MNKLRGFLLRPFVRAAIAAGPSTVDMDNVLNDGGVCLVRIAQDALGVETAALMGSIVVSA HHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHH VWQSTTRRARLPQGKRPDASLYLDEAHHFLTLPYALEDMLAAARGYRLGITLAHQNLVQL HHHHHHHHHCCCCCCCCCCCEEEECCCCEEECHHHHHHHHHHHCCCEEEEEEHHHHHHHH PRHLEESIGANARSKIYFTVSPADAKRLARHTEPRLAEHDLANLGVFHAAARLVVGGEEA HHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEECCCCC PAFTLVTEKLPPPVPGRAVQIRRALRRRAATPAAPAPTGPGPRPTSDPRRVA CEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA