| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is 158314375
Identifier: 158314375
GI number: 158314375
Start: 3027673
End: 3028959
Strand: Direct
Name: 158314375
Synonym: Franean1_2547
Alternate gene names: NA
Gene position: 3027673-3028959 (Clockwise)
Preceding gene: 158314374
Following gene: 158314376
Centisome position: 33.71
GC content: 74.44
Gene sequence:
>1287_bases ATGACGCATCCCGTACGGATTCCTGCCGACGTCGACCGCGAGGACCGCATCGTGGCGAACCTGACCGCCCGGCAGGTGCT GATCCTCGCCCTGACCGGCATCGCGTTCTACCTCGCCTGGGCCGCGACCCGCAGCCTGGTCCCGCTGCCGGTGTTCGCAC TGCTTACCGCGCCGGTCGCGGCTGTCGCCGCCATTCTCGTCCTCGGCCAGCGTGACGGGCTCTCTCTGGACCGGCTGCTC GTCGCCGCGATCCGCCAGCGCACCAGCCCACGGCACCGGATCAACGCCCCTGAAGGCGTGATTCCACCGCCGTCCTGGCT GGCTGCCCGCGCCACCAGCGGCTCCGGTGGCCGACGGTCGGACGCGAACGCACAGAGCGCGGCGCCGCTGCGGTTGCCGG CCCGCACCGTCACCTCCAACGCCGGGGTCGGCGTGATCGACCTTGGGTCGGACGGGCTGGCCGTGGTCGCGGTCGTCTCC ACCGTGAACTTCGCCCTGCGCACACCGGGCGAGCAGGACGGGCTGGTAGCCGTGTTTGCCCGCTACCTGCATTCGTTGAC CGCGCCGGTGCAGATCCTGGTGCGGGCGATGCCCGCCGACCTGGCCGCCCAGATCCAGCAGCTCGACGACGCCGCCGACC AGCTGCCTCACCCCGCGCTGGCCCACGCCGCCCGCGAGCACGCCACCTACCTGGCCCAACTCGCCGACGAGATGCAGCTA CTGACCCGCCAGGTGCTGCTGGTCCTACGCGAACCACTCGTCACCGCCGGCCCGGTCGATGGGCTCGGCGGCGCCTCCCT CCTGGCCGCCCTGTCTGGCCGGCGAGCGGCAGCCCGCGACGCCCGCCGCGCCGGACAGGCCATCCGACGGGCCGCGCACA CCCGGCTCGCCCGCCGCCTCGCCGAAGCGACCGACCTGCTAGCTCCCGCCGGGATCGTGGTCACGCCGCTGGACGCCGGC ACGGCGACCAGCGTGCTGGCCGCCGCCTGCAACCCCGCCGGGCTGGTCCCCCCGTCCGTGCTCGCCGCCCCCGACGAGGT CATCACCGCCGACCTCCCCGAGGGCTACCCGGCCTACCAGCCCGGCACCGACGACGGCGGCTACCTGGACGACGACGGGT TCGACCACCCGGACGCGGCGGCCGGCCCCGGCTACGACGACCGGTTCGACGACGCCGACGACCCCGACTTCTGGGACCCG CCCGCCCTGCGTCCGCCTGCGGGGCGCTCCGACGACGGCTCCCGACGGCCAGCACGACACACAGCCCGGAAGGGACACGC CCGATGA
Upstream 100 bases:
>100_bases GCAGCCTCGCTACCAGCAACAGCTGCTGCCGGCGATGCCCCGCCGTCCCAGCAAGCCCCGGAAGCCCCCGAAGCCACCGA AGGAAAAGTGATCATCTGCG
Downstream 100 bases:
>100_bases GCCGACGAACCCGACGCCGCGCCTCCATGCAGGCCCACAGCCCGTCGACACAGCCGGTGAACGCCGCCGCGGCGGCGTTC GTCCCGGACGCACTCTCGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 428; Mature: 427
Protein sequence:
>428_residues MTHPVRIPADVDREDRIVANLTARQVLILALTGIAFYLAWAATRSLVPLPVFALLTAPVAAVAAILVLGQRDGLSLDRLL VAAIRQRTSPRHRINAPEGVIPPPSWLAARATSGSGGRRSDANAQSAAPLRLPARTVTSNAGVGVIDLGSDGLAVVAVVS TVNFALRTPGEQDGLVAVFARYLHSLTAPVQILVRAMPADLAAQIQQLDDAADQLPHPALAHAAREHATYLAQLADEMQL LTRQVLLVLREPLVTAGPVDGLGGASLLAALSGRRAAARDARRAGQAIRRAAHTRLARRLAEATDLLAPAGIVVTPLDAG TATSVLAAACNPAGLVPPSVLAAPDEVITADLPEGYPAYQPGTDDGGYLDDDGFDHPDAAAGPGYDDRFDDADDPDFWDP PALRPPAGRSDDGSRRPARHTARKGHAR
Sequences:
>Translated_428_residues MTHPVRIPADVDREDRIVANLTARQVLILALTGIAFYLAWAATRSLVPLPVFALLTAPVAAVAAILVLGQRDGLSLDRLL VAAIRQRTSPRHRINAPEGVIPPPSWLAARATSGSGGRRSDANAQSAAPLRLPARTVTSNAGVGVIDLGSDGLAVVAVVS TVNFALRTPGEQDGLVAVFARYLHSLTAPVQILVRAMPADLAAQIQQLDDAADQLPHPALAHAAREHATYLAQLADEMQL LTRQVLLVLREPLVTAGPVDGLGGASLLAALSGRRAAARDARRAGQAIRRAAHTRLARRLAEATDLLAPAGIVVTPLDAG TATSVLAAACNPAGLVPPSVLAAPDEVITADLPEGYPAYQPGTDDGGYLDDDGFDHPDAAAGPGYDDRFDDADDPDFWDP PALRPPAGRSDDGSRRPARHTARKGHAR >Mature_427_residues THPVRIPADVDREDRIVANLTARQVLILALTGIAFYLAWAATRSLVPLPVFALLTAPVAAVAAILVLGQRDGLSLDRLLV AAIRQRTSPRHRINAPEGVIPPPSWLAARATSGSGGRRSDANAQSAAPLRLPARTVTSNAGVGVIDLGSDGLAVVAVVST VNFALRTPGEQDGLVAVFARYLHSLTAPVQILVRAMPADLAAQIQQLDDAADQLPHPALAHAAREHATYLAQLADEMQLL TRQVLLVLREPLVTAGPVDGLGGASLLAALSGRRAAARDARRAGQAIRRAAHTRLARRLAEATDLLAPAGIVVTPLDAGT ATSVLAAACNPAGLVPPSVLAAPDEVITADLPEGYPAYQPGTDDGGYLDDDGFDHPDAAAGPGYDDRFDDADDPDFWDPP ALRPPAGRSDDGSRRPARHTARKGHAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44732; Mature: 44601
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHPVRIPADVDREDRIVANLTARQVLILALTGIAFYLAWAATRSLVPLPVFALLTAPVA CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH AVAAILVLGQRDGLSLDRLLVAAIRQRTSPRHRINAPEGVIPPPSWLAARATSGSGGRRS HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCC DANAQSAAPLRLPARTVTSNAGVGVIDLGSDGLAVVAVVSTVNFALRTPGEQDGLVAVFA CCCCCCCCCCCCCHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHH RYLHSLTAPVQILVRAMPADLAAQIQQLDDAADQLPHPALAHAAREHATYLAQLADEMQL HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH LTRQVLLVLREPLVTAGPVDGLGGASLLAALSGRRAAARDARRAGQAIRRAAHTRLARRL HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH AEATDLLAPAGIVVTPLDAGTATSVLAAACNPAGLVPPSVLAAPDEVITADLPEGYPAYQ HHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCHHHCCCCHHEECCCCCCCCCCC PGTDDGGYLDDDGFDHPDAAAGPGYDDRFDDADDPDFWDPPALRPPAGRSDDGSRRPARH CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH TARKGHAR HHHCCCCC >Mature Secondary Structure THPVRIPADVDREDRIVANLTARQVLILALTGIAFYLAWAATRSLVPLPVFALLTAPVA CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH AVAAILVLGQRDGLSLDRLLVAAIRQRTSPRHRINAPEGVIPPPSWLAARATSGSGGRRS HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCC DANAQSAAPLRLPARTVTSNAGVGVIDLGSDGLAVVAVVSTVNFALRTPGEQDGLVAVFA CCCCCCCCCCCCCHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHH RYLHSLTAPVQILVRAMPADLAAQIQQLDDAADQLPHPALAHAAREHATYLAQLADEMQL HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH LTRQVLLVLREPLVTAGPVDGLGGASLLAALSGRRAAARDARRAGQAIRRAAHTRLARRL HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH AEATDLLAPAGIVVTPLDAGTATSVLAAACNPAGLVPPSVLAAPDEVITADLPEGYPAYQ HHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCHHHCCCCHHEECCCCCCCCCCC PGTDDGGYLDDDGFDHPDAAAGPGYDDRFDDADDPDFWDPPALRPPAGRSDDGSRRPARH CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH TARKGHAR HHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA