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The map label for this gene is xerD [H]

Identifier: 158314368

GI number: 158314368

Start: 3019940

End: 3021007

Strand: Direct

Name: xerD [H]

Synonym: Franean1_2540

Alternate gene names: 158314368

Gene position: 3019940-3021007 (Clockwise)

Preceding gene: 158314363

Following gene: 158314369

Centisome position: 33.62

GC content: 66.48

Gene sequence:

>1068_bases
GTGGTTCGCGACCTGCGGGACCAGCGGCCATCGGCGGCGTCTGCCGACGAGTTGGCGATGTTCGAGACGGACGTGCTCGC
GGGGTTCGTGCTCGCCCGGTCGTCGGCCGGGCTGACGGACGGGACGATCCGTAGCGACGTCGGGAACCTGGAACAGATCC
GCTCCTGGTTCGGCCGGGCGCTGTGGGAGATGGAGCCAGCCGACGCCGACGTCTATTTCGGTCGGGTGCTGCGGGGTTCG
CCGAGTGGGACACGGCTGGCCAGGGCGGCGGCACTGAGCACGTACTTCGAGTTCGTGGAGTTGCGCCACAAGGTCGAGAT
TCACAGGATGACCGGACGCGTCGTTCAGTGTCCGCTGGATGAGATGAACCGGCCGCGTGGAAGCAAGGACGCGCGACTGC
GGATTCCGCCGGTCGATCGCGAGATTGCCGAGTTGTTCTCCGGCTGGTCGCGCGAATTGGCGACCTGCCGGAAGTTCGCT
CCGAGCGCTCGCAACTACACCGCGGCGCGGCTGATGGCGGAGGTGGGACTGCGGGTGAACGAGGCCCGCTCGCTGGATCT
CGCGGACATCCGATGGGAGCTGGGCCGCTTCGGCAAGCTCCATGTCCGTCACGGCAAGGGCGCGCACGGTTCGGGGCCGC
GAGAACGGATGGTGCCGCTGATCAACCATGCGGGGCAGACGCTGCGCTGGTACGTCGAGGACGTGTGGGGTCACTTCGAC
GAGGACCACACCCGTCACGGCGCTCCGCTTTTCCCTTCCGAGCGGCGCAATGTCGACGGTGCACCCGCACGTGTCGGCTA
TGACGCGTTGCGTTCGGGGTTGGCCGCCGCCGCGGCCGAGCACCTCCCCGCGTGGAAAAGCAGGCTCACTCCCCACATTC
TGCGTCATTACTGCGCTTCCCAGATGTACCTCAACGGGATCGATCTTGTTTCGATCCAAGAGATGCTCGGGCATTCCTGG
GTGGCTACGACAATGCGTTATGTTCATGTGCACCGCACCCGCATCGAGGACGCCTGGATCGCGGGGCAGGGGCGAGCCGC
ACAGCGGTTGGAAGGGCTGGTCCAGTGA

Upstream 100 bases:

>100_bases
ATGCCCCGTTGACATGGCTTCGGTTTTCCTGAAGGTTCATCACGTCGGGTGCTCTCTCGATGGTTCGAGTGAAGGTGAGG
GGCTGGGGTTGGCGCTCGCT

Downstream 100 bases:

>100_bases
AATGGAATCTGCGGCTCGCCGCCGCGAAACGTGACATCTGGAAGGCGTCCGAGCTGCAACGCGCGCTGGCCGAACATGGG
CTGGTGATTTCGGCGGGAAA

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 355; Mature: 355

Protein sequence:

>355_residues
MVRDLRDQRPSAASADELAMFETDVLAGFVLARSSAGLTDGTIRSDVGNLEQIRSWFGRALWEMEPADADVYFGRVLRGS
PSGTRLARAAALSTYFEFVELRHKVEIHRMTGRVVQCPLDEMNRPRGSKDARLRIPPVDREIAELFSGWSRELATCRKFA
PSARNYTAARLMAEVGLRVNEARSLDLADIRWELGRFGKLHVRHGKGAHGSGPRERMVPLINHAGQTLRWYVEDVWGHFD
EDHTRHGAPLFPSERRNVDGAPARVGYDALRSGLAAAAAEHLPAWKSRLTPHILRHYCASQMYLNGIDLVSIQEMLGHSW
VATTMRYVHVHRTRIEDAWIAGQGRAAQRLEGLVQ

Sequences:

>Translated_355_residues
MVRDLRDQRPSAASADELAMFETDVLAGFVLARSSAGLTDGTIRSDVGNLEQIRSWFGRALWEMEPADADVYFGRVLRGS
PSGTRLARAAALSTYFEFVELRHKVEIHRMTGRVVQCPLDEMNRPRGSKDARLRIPPVDREIAELFSGWSRELATCRKFA
PSARNYTAARLMAEVGLRVNEARSLDLADIRWELGRFGKLHVRHGKGAHGSGPRERMVPLINHAGQTLRWYVEDVWGHFD
EDHTRHGAPLFPSERRNVDGAPARVGYDALRSGLAAAAAEHLPAWKSRLTPHILRHYCASQMYLNGIDLVSIQEMLGHSW
VATTMRYVHVHRTRIEDAWIAGQGRAAQRLEGLVQ
>Mature_355_residues
MVRDLRDQRPSAASADELAMFETDVLAGFVLARSSAGLTDGTIRSDVGNLEQIRSWFGRALWEMEPADADVYFGRVLRGS
PSGTRLARAAALSTYFEFVELRHKVEIHRMTGRVVQCPLDEMNRPRGSKDARLRIPPVDREIAELFSGWSRELATCRKFA
PSARNYTAARLMAEVGLRVNEARSLDLADIRWELGRFGKLHVRHGKGAHGSGPRERMVPLINHAGQTLRWYVEDVWGHFD
EDHTRHGAPLFPSERRNVDGAPARVGYDALRSGLAAAAAEHLPAWKSRLTPHILRHYCASQMYLNGIDLVSIQEMLGHSW
VATTMRYVHVHRTRIEDAWIAGQGRAAQRLEGLVQ

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 39931; Mature: 39931

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRDLRDQRPSAASADELAMFETDVLAGFVLARSSAGLTDGTIRSDVGNLEQIRSWFGRA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHH
LWEMEPADADVYFGRVLRGSPSGTRLARAAALSTYFEFVELRHKVEIHRMTGRVVQCPLD
HHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHH
EMNRPRGSKDARLRIPPVDREIAELFSGWSRELATCRKFAPSARNYTAARLMAEVGLRVN
HHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC
EARSLDLADIRWELGRFGKLHVRHGKGAHGSGPRERMVPLINHAGQTLRWYVEDVWGHFD
CCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCC
EDHTRHGAPLFPSERRNVDGAPARVGYDALRSGLAAAAAEHLPAWKSRLTPHILRHYCAS
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHH
QMYLNGIDLVSIQEMLGHSWVATTMRYVHVHRTRIEDAWIAGQGRAAQRLEGLVQ
HHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHEECCCCHHHHHHHHHCC
>Mature Secondary Structure
MVRDLRDQRPSAASADELAMFETDVLAGFVLARSSAGLTDGTIRSDVGNLEQIRSWFGRA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHH
LWEMEPADADVYFGRVLRGSPSGTRLARAAALSTYFEFVELRHKVEIHRMTGRVVQCPLD
HHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHH
EMNRPRGSKDARLRIPPVDREIAELFSGWSRELATCRKFAPSARNYTAARLMAEVGLRVN
HHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC
EARSLDLADIRWELGRFGKLHVRHGKGAHGSGPRERMVPLINHAGQTLRWYVEDVWGHFD
CCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCC
EDHTRHGAPLFPSERRNVDGAPARVGYDALRSGLAAAAAEHLPAWKSRLTPHILRHYCAS
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHH
QMYLNGIDLVSIQEMLGHSWVATTMRYVHVHRTRIEDAWIAGQGRAAQRLEGLVQ
HHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHEECCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376 [H]