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The map label for this gene is ycdM [C]

Identifier: 158314303

GI number: 158314303

Start: 2950276

End: 2951145

Strand: Direct

Name: ycdM [C]

Synonym: Franean1_2473

Alternate gene names: 158314303

Gene position: 2950276-2951145 (Clockwise)

Preceding gene: 158314300

Following gene: 158314307

Centisome position: 32.85

GC content: 68.74

Gene sequence:

>870_bases
ATGCAGATCGGTGTCGTCTACCCGCAGATCGAGCTTCGAGGAGATCCGAACGCTGTCCGGCGGATCGGGACCGCGGTCGA
GGAGCTGGGCTTTAACCACCTCCTCGCCTACGACCACGTGCTCGGCGCCGTACATGCCGACAGGACGCCCGCGCTTTCAG
GCCCCTACACCGAGCATGACCCGTTCCACGACCCGTTCGTGATGTTCGCTTATCTGGCCGGTATCACCGAACGTATCGGT
TTCGCGACCGGGGTCCTGATTCTCCCGCAGCGCCAGACCGCACTCGTGGCCCGACAGGCCGCCGATGTCGATCTCCTGTC
CGGCGGCCGGCTGCGCCTCGGTGTGGGGGTCGGCTGGAACTCCGTCGAGTACGAGGCCCTCGGCCAGGACTTCCGCACCC
GCGGTGCTCGGCAGGAAGAACAGATCACGCTGCTTCGCCGGTTGTTCACCGAACCCGTCGTCGACTTCTCCGGCCGCTTC
GACCGGGTCGACCGGGCCGCACTCGTGCCGAAGCCGTCCCGGCCCGTCCCGATCTGGCTCGGCGGGTCCGGCGAGGCCGC
GTTCGACCGGGCGGCCCGGCTCGCGGACGGTTTCGTCTTCTTCGGCGGCTTCGGCGTCGATCACGCCCTGGCCGCCTGGA
AGCGGCTACGCGAGAAGTTGCACGGCCTCGGCCGGTCGGTCGAGGAGTTCGGCGCCGATTACGTGGTTCTTCCTCGGGGC
GGAGTAGGCGACCTCACGGCGGAGATCGACGCCTGGCGCGAAGCCGGCGGAACCCACGTCTCCGTGGCCACGATGGGACG
CGGCCTGGACTCCGCCGACGGTCACGTCGACTATCTCGCCACGGTCGCGGACGCGCTCAACCTGTCGTGA

Upstream 100 bases:

>100_bases
CTGCGGTGTGGTCCAGCCTGAGTGGCCCGAGCCGCCCCGACCGGCGTGTCAGAGGGGAGGAGATCAACATCCTCAAGATC
GGCAGAGCACAATGACGTCC

Downstream 100 bases:

>100_bases
CGAGCGCGGCAAGGCTGCCGGGCACGCCCCACGAGAGGAGCCGATGTCGCGTCGTCCGGGCGTACTCCGCTAGGCGAGGC
GGTCGAGAATGCCTACGACC

Product: luciferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MQIGVVYPQIELRGDPNAVRRIGTAVEELGFNHLLAYDHVLGAVHADRTPALSGPYTEHDPFHDPFVMFAYLAGITERIG
FATGVLILPQRQTALVARQAADVDLLSGGRLRLGVGVGWNSVEYEALGQDFRTRGARQEEQITLLRRLFTEPVVDFSGRF
DRVDRAALVPKPSRPVPIWLGGSGEAAFDRAARLADGFVFFGGFGVDHALAAWKRLREKLHGLGRSVEEFGADYVVLPRG
GVGDLTAEIDAWREAGGTHVSVATMGRGLDSADGHVDYLATVADALNLS

Sequences:

>Translated_289_residues
MQIGVVYPQIELRGDPNAVRRIGTAVEELGFNHLLAYDHVLGAVHADRTPALSGPYTEHDPFHDPFVMFAYLAGITERIG
FATGVLILPQRQTALVARQAADVDLLSGGRLRLGVGVGWNSVEYEALGQDFRTRGARQEEQITLLRRLFTEPVVDFSGRF
DRVDRAALVPKPSRPVPIWLGGSGEAAFDRAARLADGFVFFGGFGVDHALAAWKRLREKLHGLGRSVEEFGADYVVLPRG
GVGDLTAEIDAWREAGGTHVSVATMGRGLDSADGHVDYLATVADALNLS
>Mature_289_residues
MQIGVVYPQIELRGDPNAVRRIGTAVEELGFNHLLAYDHVLGAVHADRTPALSGPYTEHDPFHDPFVMFAYLAGITERIG
FATGVLILPQRQTALVARQAADVDLLSGGRLRLGVGVGWNSVEYEALGQDFRTRGARQEEQITLLRRLFTEPVVDFSGRF
DRVDRAALVPKPSRPVPIWLGGSGEAAFDRAARLADGFVFFGGFGVDHALAAWKRLREKLHGLGRSVEEFGADYVVLPRG
GVGDLTAEIDAWREAGGTHVSVATMGRGLDSADGHVDYLATVADALNLS

Specific function: Unknown

COG id: COG2141

COG function: function code C; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787247, Length=176, Percent_Identity=32.9545454545455, Blast_Score=76, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019921
- InterPro:   IPR011251
- InterPro:   IPR016048 [H]

Pfam domain/function: PF00296 Bac_luciferase [H]

EC number: NA

Molecular weight: Translated: 31314; Mature: 31314

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIGVVYPQIELRGDPNAVRRIGTAVEELGFNHLLAYDHVLGAVHADRTPALSGPYTEHD
CEEEEEECEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PFHDPFVMFAYLAGITERIGFATGVLILPQRQTALVARQAADVDLLSGGRLRLGVGVGWN
CCCCHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHCCCEEECCCEEEEEEECCCC
SVEYEALGQDFRTRGARQEEQITLLRRLFTEPVVDFSGRFDRVDRAALVPKPSRPVPIWL
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCEEEEE
GGSGEAAFDRAARLADGFVFFGGFGVDHALAAWKRLREKLHGLGRSVEEFGADYVVLPRG
CCCCCHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCEEEECCC
GVGDLTAEIDAWREAGGTHVSVATMGRGLDSADGHVDYLATVADALNLS
CCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQIGVVYPQIELRGDPNAVRRIGTAVEELGFNHLLAYDHVLGAVHADRTPALSGPYTEHD
CEEEEEECEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PFHDPFVMFAYLAGITERIGFATGVLILPQRQTALVARQAADVDLLSGGRLRLGVGVGWN
CCCCHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHCCCEEECCCEEEEEEECCCC
SVEYEALGQDFRTRGARQEEQITLLRRLFTEPVVDFSGRFDRVDRAALVPKPSRPVPIWL
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCEEEEE
GGSGEAAFDRAARLADGFVFFGGFGVDHALAAWKRLREKLHGLGRSVEEFGADYVVLPRG
CCCCCHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCEEEECCC
GVGDLTAEIDAWREAGGTHVSVATMGRGLDSADGHVDYLATVADALNLS
CCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]