| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is rcp1 [H]
Identifier: 158314266
GI number: 158314266
Start: 2898811
End: 2899245
Strand: Direct
Name: rcp1 [H]
Synonym: Franean1_2436
Alternate gene names: 158314266
Gene position: 2898811-2899245 (Clockwise)
Preceding gene: 158314264
Following gene: 158314267
Centisome position: 32.27
GC content: 66.21
Gene sequence:
>435_bases GTGACCGCTGCCGCCGCTGTCCGCGCGTTCAACATCCTGCTGGTGGAGGACGACCCCGGCGACACGCTGATGGTTGAGGA GGCGCTGACCGACCGCGGTGTCAACCATGAGCTCCACGTGGCCGTCGACGGCGTGGAGGCGATGGCCTACCTGCGGGACC CCGCGAACCCTCGGCCCGACCTCATCCTGCTGGACCTCAACATGCCGCGGATGGACGGCCGGGAGGTTCTCAGCGCTTTG AAGGCGGACCCGCGGCTGCTGTCCATCCCGGTGGTTGTGCTGACAACCTCGGAGGCGCCGGACGACGTGCTGTACAGCTA CACGCTGCACGCGAACGCCTACGTCTCGAAACCCGTGGACTTCGAGGCCTTCATCGAGGTGATTCATCGGATCGACGACT TCTATCTCGGTCTGGTGCGGCTGCCTCGCCGGTGA
Upstream 100 bases:
>100_bases ATGGCCGGACACGGGCGTGACGCCACGGCGTCCGGCCGGTGCTCCGAGCTGATCCAGACTCTGTGACCTGATCCAGACTC CGTGACAAGAGAGGTCGTTC
Downstream 100 bases:
>100_bases CGCGTCAGCGAAGCCTTCCCTAACTGAGGACAGGCTAGCCTAAATAGGCGTCGATGTGAGGTTCGCGGCGCTCTTACCAG TATGCGCGCCGGGCTCCACT
Product: response regulator receiver protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 144; Mature: 143
Protein sequence:
>144_residues MTAAAAVRAFNILLVEDDPGDTLMVEEALTDRGVNHELHVAVDGVEAMAYLRDPANPRPDLILLDLNMPRMDGREVLSAL KADPRLLSIPVVVLTTSEAPDDVLYSYTLHANAYVSKPVDFEAFIEVIHRIDDFYLGLVRLPRR
Sequences:
>Translated_144_residues MTAAAAVRAFNILLVEDDPGDTLMVEEALTDRGVNHELHVAVDGVEAMAYLRDPANPRPDLILLDLNMPRMDGREVLSAL KADPRLLSIPVVVLTTSEAPDDVLYSYTLHANAYVSKPVDFEAFIEVIHRIDDFYLGLVRLPRR >Mature_143_residues TAAAAVRAFNILLVEDDPGDTLMVEEALTDRGVNHELHVAVDGVEAMAYLRDPANPRPDLILLDLNMPRMDGREVLSALK ADPRLLSIPVVVLTTSEAPDDVLYSYTLHANAYVSKPVDFEAFIEVIHRIDDFYLGLVRLPRR
Specific function: Forms a two-component system with cph1 in which it acts as receiver substrate [H]
COG id: COG0784
COG function: function code T; FOG: CheY-like receiver
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011006 - InterPro: IPR001789 [H]
Pfam domain/function: PF00072 Response_reg [H]
EC number: 2.7.3.-
Molecular weight: Translated: 16025; Mature: 15893
Theoretical pI: Translated: 4.37; Mature: 4.37
Prosite motif: PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAAAAVRAFNILLVEDDPGDTLMVEEALTDRGVNHELHVAVDGVEAMAYLRDPANPRPD CCCHHEEEEEEEEEEECCCCCEEEEEEHHHHCCCCCEEEEEECCHHHHHHHCCCCCCCCC LILLDLNMPRMDGREVLSALKADPRLLSIPVVVLTTSEAPDDVLYSYTLHANAYVSKPVD EEEEECCCCCCCHHHHHHHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEECCEEECCCCC FEAFIEVIHRIDDFYLGLVRLPRR HHHHHHHHHHHHHHHHHEEECCCC >Mature Secondary Structure TAAAAVRAFNILLVEDDPGDTLMVEEALTDRGVNHELHVAVDGVEAMAYLRDPANPRPD CCHHEEEEEEEEEEECCCCCEEEEEEHHHHCCCCCEEEEEECCHHHHHHHCCCCCCCCC LILLDLNMPRMDGREVLSALKADPRLLSIPVVVLTTSEAPDDVLYSYTLHANAYVSKPVD EEEEECCCCCCCHHHHHHHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEECCEEECCCCC FEAFIEVIHRIDDFYLGLVRLPRR HHHHHHHHHHHHHHHHHEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231; 9278513 [H]