| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158314193
Identifier: 158314193
GI number: 158314193
Start: 2807334
End: 2808476
Strand: Direct
Name: 158314193
Synonym: Franean1_2363
Alternate gene names: NA
Gene position: 2807334-2808476 (Clockwise)
Preceding gene: 158314192
Following gene: 158314196
Centisome position: 31.25
GC content: 71.04
Gene sequence:
>1143_bases TTGTCCCGGGCCCAGCTCCGGGCCGCGTCGACCAGTTGCAGCAGCGACCGGCCGAGGGCGGTCAGCCGGTACTCGACCCG GGGCGGGTTCTCGTCGAAGGCGTTTCTGCTCACCAGGCCGTCGCGTTCCATCGCACGGAGGGTTTCGGTCAGGACCTTCG CGCTCACCGAGCCGAGGATCTGCCTGAGCTCGGTGAACCGCCGCGGCCGCGCCTCGAGACACAGGACGACCATCGCGGTC CACTTGTCGCCGATCCGCACTGGGAATGCGCTCATCGGGCAGGCCGGATCGAACGTCGGGGCTTCGGCCGCGTTCTCCAT TCCGCCAAGGGTAGCCGGTCACGTTGCGGTAACCGGCCCACCATCCCCTAGTTTCTCCACCATGACAGGAACACAGCCCG CGGGGACGGGACCCCGGCCACCTGCTCAACTGCGCGCTGCCGTGCTCGGTGCCGGTGGCCGAGCCGGACGAGCCGTCAGC CGGGAGCTCGTCATCCGGGGACATCGAGTGACCGGGGTGGTGCGGGACATCCGCCGACACTCCTCACTCGGAGACCTCGG GGTCGACGTGGCAGAGGCGGATGCCACCCGCGGCGCCGACCTCGTCGAGATTCTGCGCGAGGCCGATGTCGTCGTAGTCG CCGTGACGCCCTTTTCGGCGCCGCCGCCTGCGTTCGACGATTTTGACGAGGCATTTTACGAACATGTCGTGGCCGGGGTC GTCGGCGCCGCGCGGGGGTCGCCGGCGACCCGGCTGATCACGGTCGGGCTGTTCGCCACGCTGACCATGGCCGACGGGCG CACGGCCATGGACGACCCGGCGGTCTTCCCGCCGCGGCTTCTGCCGTTCGCACGGGCCCACGCCCGCGAGCTGCCCGCGC TACGCCGCCTCGCGTCGGCGCACGACTGGTTGGTCGTCACCCCACCCGCGGGGCTGCGGGCCGATGGCGTCGATGACACG GCGGGCTACGCGCTCGTCGAACCGCCCGTCGACCACCGCCTGTTCGAAGGGGTGCTCGGGTACGGCCAGCTGGCGCGGGC CGTGGCGGATCAGTCCGAGACCCCGACCCTGCACTGGACCCAGGTGGCCGTTCTGCCCGCGCCGAGAACAACCGTGGACG AGGCGGGCACCGGAATCGGGTGA
Upstream 100 bases:
>100_bases CCTCTAGGAAGAACTGACGGAGCCTGGGTGCGGGACGGTGCCGTGACCGCGGAGAAGCAGGTCGTCGTGGTGCCGGCGGG CGGCCAGGAGGTCGTCGAGG
Downstream 100 bases:
>100_bases CCGCGGGCCGTGGCGCGAACAGGCGGCCGCCGGACGCCGGGACGGTGGGATGCCACCGCCCCGGCGTACCCGGATCAGGA CCTCGCGTACGGCCCCGTCC
Product: putative NADH-flavin reductase-like protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 380; Mature: 379
Protein sequence:
>380_residues MSRAQLRAASTSCSSDRPRAVSRYSTRGGFSSKAFLLTRPSRSIARRVSVRTFALTEPRICLSSVNRRGRASRHRTTIAV HLSPIRTGNALIGQAGSNVGASAAFSIPPRVAGHVAVTGPPSPSFSTMTGTQPAGTGPRPPAQLRAAVLGAGGRAGRAVS RELVIRGHRVTGVVRDIRRHSSLGDLGVDVAEADATRGADLVEILREADVVVVAVTPFSAPPPAFDDFDEAFYEHVVAGV VGAARGSPATRLITVGLFATLTMADGRTAMDDPAVFPPRLLPFARAHARELPALRRLASAHDWLVVTPPAGLRADGVDDT AGYALVEPPVDHRLFEGVLGYGQLARAVADQSETPTLHWTQVAVLPAPRTTVDEAGTGIG
Sequences:
>Translated_380_residues MSRAQLRAASTSCSSDRPRAVSRYSTRGGFSSKAFLLTRPSRSIARRVSVRTFALTEPRICLSSVNRRGRASRHRTTIAV HLSPIRTGNALIGQAGSNVGASAAFSIPPRVAGHVAVTGPPSPSFSTMTGTQPAGTGPRPPAQLRAAVLGAGGRAGRAVS RELVIRGHRVTGVVRDIRRHSSLGDLGVDVAEADATRGADLVEILREADVVVVAVTPFSAPPPAFDDFDEAFYEHVVAGV VGAARGSPATRLITVGLFATLTMADGRTAMDDPAVFPPRLLPFARAHARELPALRRLASAHDWLVVTPPAGLRADGVDDT AGYALVEPPVDHRLFEGVLGYGQLARAVADQSETPTLHWTQVAVLPAPRTTVDEAGTGIG >Mature_379_residues SRAQLRAASTSCSSDRPRAVSRYSTRGGFSSKAFLLTRPSRSIARRVSVRTFALTEPRICLSSVNRRGRASRHRTTIAVH LSPIRTGNALIGQAGSNVGASAAFSIPPRVAGHVAVTGPPSPSFSTMTGTQPAGTGPRPPAQLRAAVLGAGGRAGRAVSR ELVIRGHRVTGVVRDIRRHSSLGDLGVDVAEADATRGADLVEILREADVVVVAVTPFSAPPPAFDDFDEAFYEHVVAGVV GAARGSPATRLITVGLFATLTMADGRTAMDDPAVFPPRLLPFARAHARELPALRRLASAHDWLVVTPPAGLRADGVDDTA GYALVEPPVDHRLFEGVLGYGQLARAVADQSETPTLHWTQVAVLPAPRTTVDEAGTGIG
Specific function: Unknown
COG id: COG2910
COG function: function code R; Putative NADH-flavin reductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39848; Mature: 39716
Theoretical pI: Translated: 11.55; Mature: 11.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRAQLRAASTSCSSDRPRAVSRYSTRGGFSSKAFLLTRPSRSIARRVSVRTFALTEPRI CCCHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHEEEEECCCHH CLSSVNRRGRASRHRTTIAVHLSPIRTGNALIGQAGSNVGASAAFSIPPRVAGHVAVTGP HHHHHHHCCCCCCCCEEEEEEEEECCCCCEEEECCCCCCCCCEEECCCCCCCCEEEEECC PSPSFSTMTGTQPAGTGPRPPAQLRAAVLGAGGRAGRAVSRELVIRGHRVTGVVRDIRRH CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHEECCHHHHHHHHHHHH SSLGDLGVDVAEADATRGADLVEILREADVVVVAVTPFSAPPPAFDDFDEAFYEHVVAGV CCCCCCCCCHHHCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH VGAARGSPATRLITVGLFATLTMADGRTAMDDPAVFPPRLLPFARAHARELPALRRLASA HHHCCCCCCHHEEEEEHHHEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC HDWLVVTPPAGLRADGVDDTAGYALVEPPVDHRLFEGVLGYGQLARAVADQSETPTLHWT CCEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE QVAVLPAPRTTVDEAGTGIG EEEEECCCCCCHHCCCCCCC >Mature Secondary Structure SRAQLRAASTSCSSDRPRAVSRYSTRGGFSSKAFLLTRPSRSIARRVSVRTFALTEPRI CCHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHEEEEECCCHH CLSSVNRRGRASRHRTTIAVHLSPIRTGNALIGQAGSNVGASAAFSIPPRVAGHVAVTGP HHHHHHHCCCCCCCCEEEEEEEEECCCCCEEEECCCCCCCCCEEECCCCCCCCEEEEECC PSPSFSTMTGTQPAGTGPRPPAQLRAAVLGAGGRAGRAVSRELVIRGHRVTGVVRDIRRH CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHEECCHHHHHHHHHHHH SSLGDLGVDVAEADATRGADLVEILREADVVVVAVTPFSAPPPAFDDFDEAFYEHVVAGV CCCCCCCCCHHHCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH VGAARGSPATRLITVGLFATLTMADGRTAMDDPAVFPPRLLPFARAHARELPALRRLASA HHHCCCCCCHHEEEEEHHHEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC HDWLVVTPPAGLRADGVDDTAGYALVEPPVDHRLFEGVLGYGQLARAVADQSETPTLHWT CCEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE QVAVLPAPRTTVDEAGTGIG EEEEECCCCCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA