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The map label for this gene is ydcM [C]

Identifier: 158313999

GI number: 158313999

Start: 2599255

End: 2600388

Strand: Direct

Name: ydcM [C]

Synonym: Franean1_2165

Alternate gene names: 158313999

Gene position: 2599255-2600388 (Clockwise)

Preceding gene: 158313998

Following gene: 158314000

Centisome position: 28.94

GC content: 67.2

Gene sequence:

>1134_bases
GTGGTGAAGCGGGCGTACCGCTACCGCTTCAACCCGACCCCCGATCAGGCCGCCCAGCTCGCGCGAACCTTCGGCTGCGT
CCGCTACGTGTACAACCGGGCGCTCGCCGAACGGCACCGGGCCTGGTTCCAGGAGCAGCGGCGGGTCACCCACGCCGAGA
CCGACCGGATGCTCACGGCGTGGAAACGCGACCCGGAAACGGAATGGCTCGCCGAGCCGTCGAAAGGCCCGCTTCAGGCC
ACGCTGCGGAATCTCCAGACCGCGTATGTGAACTTCTGGCAGAAACGCGCCGGCTACCCGACGTTCAAGAAGAAGGGCAG
GACCCTCGACTCGGCGACCTACTTCCGGAACTGTTTCAGTTTTCGGGACGGTCGGATCACGCTGGCGAAGCAGGACGCGC
CGCTGGCGATCGTCTGGTCGCGTCCGCTGCCCGAGGGCGCGGAGCCCTCGCAGGTCACGGTGTCGCGGAACGCCCGCGGC
CAGTACCACGTCTCGATCCTGGTCGAAGAGAAGATCACTACGCTTCCCGCGTTGCCCGGGCGGGTGGGGATCGACGCGGG
GGTCACCTCGCTGGTCACCCTGTCGACGGGGGAGAAGGTGGCCAACCCGAAGCACGAGCGTCGGGATCGGGCCCGGCTGG
CCTGTGCGCAGCGGGACCTGTCCCGGAAGGTGCAGGGGTCGGTGAACCGGGCGAAGGCCCGAGCGAGGGTCGCCCGGGTG
CACGGGCGGATCGCCGACCGGCGTCGGGATCATCTCCACCAGCTGTCCACGAGGATCATCCGCGAGAACCAAACGGTGGT
CATCGAGGATCTGTCCGTCCGCAACATGGTCAGGAACCATTCGCTCGCGCGGGCGATCTCCGATGCTTCGTGGTCGGAGT
TGCGGCGGATGTTGGAGTACAAGGCCGGCTGGTACGGTCGCACCATCATTGCGATCGATCGGTTCTATCCGTCGTCCAAA
ACCTGTTCGGTGTGCGGGTCGATCGTGAAGGAACTGCCGCTCAACGTCCGGGAACGGGCCTGCCGTGGTTGCGGCACGGT
CCACGACCGGGACGTGAACGCGGCGGTCAACATTCTGGCCGCGGGGCTCGCGGTGGCTGCCTGTGGAGATGGAGTGAGAC
CGCCTCGCTCCTGA

Upstream 100 bases:

>100_bases
GAGATGCGTAGCGCGCGGGCCCTGTCCTTCGGAGCGGGGTTAGCGCATCAACGACAGCGTGACAGGCGTGCCCGCTATGC
TGTCACCTGTGGGGTCGAAG

Downstream 100 bases:

>100_bases
AGCGAGGAGGCGTCCGTTGGTGAAGCAGGAACCCGCACCGCGAGGTGTGGGAATCCCCGGTCTTCAGACCGGGGAGGAGG
TCAACACGGAGTCTCGGATC

Product: IS605 family transposase OrfB

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MVKRAYRYRFNPTPDQAAQLARTFGCVRYVYNRALAERHRAWFQEQRRVTHAETDRMLTAWKRDPETEWLAEPSKGPLQA
TLRNLQTAYVNFWQKRAGYPTFKKKGRTLDSATYFRNCFSFRDGRITLAKQDAPLAIVWSRPLPEGAEPSQVTVSRNARG
QYHVSILVEEKITTLPALPGRVGIDAGVTSLVTLSTGEKVANPKHERRDRARLACAQRDLSRKVQGSVNRAKARARVARV
HGRIADRRRDHLHQLSTRIIRENQTVVIEDLSVRNMVRNHSLARAISDASWSELRRMLEYKAGWYGRTIIAIDRFYPSSK
TCSVCGSIVKELPLNVRERACRGCGTVHDRDVNAAVNILAAGLAVAACGDGVRPPRS

Sequences:

>Translated_377_residues
MVKRAYRYRFNPTPDQAAQLARTFGCVRYVYNRALAERHRAWFQEQRRVTHAETDRMLTAWKRDPETEWLAEPSKGPLQA
TLRNLQTAYVNFWQKRAGYPTFKKKGRTLDSATYFRNCFSFRDGRITLAKQDAPLAIVWSRPLPEGAEPSQVTVSRNARG
QYHVSILVEEKITTLPALPGRVGIDAGVTSLVTLSTGEKVANPKHERRDRARLACAQRDLSRKVQGSVNRAKARARVARV
HGRIADRRRDHLHQLSTRIIRENQTVVIEDLSVRNMVRNHSLARAISDASWSELRRMLEYKAGWYGRTIIAIDRFYPSSK
TCSVCGSIVKELPLNVRERACRGCGTVHDRDVNAAVNILAAGLAVAACGDGVRPPRS
>Mature_377_residues
MVKRAYRYRFNPTPDQAAQLARTFGCVRYVYNRALAERHRAWFQEQRRVTHAETDRMLTAWKRDPETEWLAEPSKGPLQA
TLRNLQTAYVNFWQKRAGYPTFKKKGRTLDSATYFRNCFSFRDGRITLAKQDAPLAIVWSRPLPEGAEPSQVTVSRNARG
QYHVSILVEEKITTLPALPGRVGIDAGVTSLVTLSTGEKVANPKHERRDRARLACAQRDLSRKVQGSVNRAKARARVARV
HGRIADRRRDHLHQLSTRIIRENQTVVIEDLSVRNMVRNHSLARAISDASWSELRRMLEYKAGWYGRTIIAIDRFYPSSK
TCSVCGSIVKELPLNVRERACRGCGTVHDRDVNAAVNILAAGLAVAACGDGVRPPRS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=378, Percent_Identity=35.7142857142857, Blast_Score=206, Evalue=3e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 42700; Mature: 42700

Theoretical pI: Translated: 11.13; Mature: 11.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKRAYRYRFNPTPDQAAQLARTFGCVRYVYNRALAERHRAWFQEQRRVTHAETDRMLTA
CCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WKRDPETEWLAEPSKGPLQATLRNLQTAYVNFWQKRAGYPTFKKKGRTLDSATYFRNCFS
HCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHH
FRDGRITLAKQDAPLAIVWSRPLPEGAEPSQVTVSRNARGQYHVSILVEEKITTLPALPG
CCCCEEEEEECCCCEEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEECHHHHCCCCCC
RVGIDAGVTSLVTLSTGEKVANPKHERRDRARLACAQRDLSRKVQGSVNRAKARARVARV
CCCCCCCHHHEEEECCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HGRIADRRRDHLHQLSTRIIRENQTVVIEDLSVRNMVRNHSLARAISDASWSELRRMLEY
HHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
KAGWYGRTIIAIDRFYPSSKTCSVCGSIVKELPLNVRERACRGCGTVHDRDVNAAVNILA
CCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHH
AGLAVAACGDGVRPPRS
HHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MVKRAYRYRFNPTPDQAAQLARTFGCVRYVYNRALAERHRAWFQEQRRVTHAETDRMLTA
CCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WKRDPETEWLAEPSKGPLQATLRNLQTAYVNFWQKRAGYPTFKKKGRTLDSATYFRNCFS
HCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHH
FRDGRITLAKQDAPLAIVWSRPLPEGAEPSQVTVSRNARGQYHVSILVEEKITTLPALPG
CCCCEEEEEECCCCEEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEECHHHHCCCCCC
RVGIDAGVTSLVTLSTGEKVANPKHERRDRARLACAQRDLSRKVQGSVNRAKARARVARV
CCCCCCCHHHEEEECCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HGRIADRRRDHLHQLSTRIIRENQTVVIEDLSVRNMVRNHSLARAISDASWSELRRMLEY
HHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
KAGWYGRTIIAIDRFYPSSKTCSVCGSIVKELPLNVRERACRGCGTVHDRDVNAAVNILA
CCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHH
AGLAVAACGDGVRPPRS
HHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]