| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is afr [H]
Identifier: 158313996
GI number: 158313996
Start: 2593527
End: 2595923
Strand: Direct
Name: afr [H]
Synonym: Franean1_2162
Alternate gene names: 158313996
Gene position: 2593527-2595923 (Clockwise)
Preceding gene: 158313986
Following gene: 158313997
Centisome position: 28.87
GC content: 74.8
Gene sequence:
>2397_bases GTGAGGCAGGTGGTCCAGGCCGCCGGCGGTGGAGAGGTTCGGGTCGTCGACACTCCGATTCCCTCCATCGGGGCGACCGA GGTACTCGTGGAGACGGCGGCCACCATCGTGTCCGCCGGTACCGAGCGGGCGGTGACGACGCTCGCCCGGTCCGGCTTGC TGGCCAAGGCGCGGGCACGCCCCGACCTCGTCCGCCGGGTGGCGGAGAAGGCCAGAGCGGACGGGATCGGCGAGGCGGTC CGCTCGGTCCGCGACCGGCTCGCCTCCGAACTGCCCCTGGGCTACAGCGGGGCCGGTCGGGCCGTCCGGGTGGGTACCGC CGTCGAGGGCATCCGACCCGGCGATCTGGTGGTCACCGGCGGGGCTGGCTGGGCGAACCACGCCGAGTTCCAGGCGGTAC CCGGACTGCTGTGCGCGCGGGTGCCGGACGGGGTTCCCGAGGCCGACGCCGCCTTCGCGACCATCGCCGCCATCGCGCTG CACGGGCTGCGTCTGGCCGAGGTCGGACCGGGAGCGAAGGTGGTCGTCGTCGGGCTGGGCCTCATCGGCCAGCTCGCCGC CCGCATCGCCATGGCCAGTGGATACGACGTGGCCGGCGTGGACCTCGCGGACCTGCCGCTGACCACCGCCGCGGCCAGCG GAGTGCGGGCGCTGCGCGAGTCCGGCGACGCCACCACGGCCGCGGTGCGGGAGTGGAGCCGGGGGCGCGGGGCGGATGCG GTGCTGATCTGCGCGGCGGGCCGGTCCGGCGACCCGGTGATGCGGGCGACGGAGTTCGCCCGCGACCGGGCGCAGCTCGT CGTCGTCGGGGACGTCCCGCTGGGCCTGACGCGTGCGCCGTTCTACGAGAAGGAGCTCGTCCTGCGCTTCGCGCGGTCGT ACGGCCCCGGCCGGTACGAGCGTGGCTATGAAGAATGGGGGGTGGACTACCCGGCGGGCCAGGTCCGCTGGACGGAGGGC CGCAACCAGGAGGCGGTGCTCGACCTGCTCGCCGCCGGCCGGCTGTCCGTGGCCGACCTGGTCACTCACGCCTTCCCGCT CGAGCAGGCCGCGGCCGCCTACGATCTGGTGGCGACGCGACGGGAGCCGTACCTGGCCATCCGGTTCGACTACCCGCGCC GCGCCGAGCTGACCGAGCCGGTGGAGGGCGTCCTTTCCACGGAGGGCACTCCGCCTGCGGAGGGCACCGCCCCGACCGAG GGTTCCACCCCGGGGGACGCGCGGCAGGTCGGACAGCACACGCAGCGGGTGGCGCGTCGGGTCGGTCCGCCCGGCCGGCG CCGGGGTGACCGTGTCGGTTGGATCGGCGCCGGGAACTTCTCCGGCTCGGTGTTGCTGCCGGCTTTTCGTGCTGCCGGTT TCGACCGTTTCACCAGCGTCGCTTCGGCCAGTGGGCGGTCGGCTCGCGCCTTCGCCGACCGGCATGGGTTCCAGGGGGCC GCCACCGGGGTCGACGAGCTGCTCGACGACGGCGACCTCGATGTGGTGGTGATCGCGACGCCGCACTCCACGCACGCCCG GCTGGCGGCGGCGGCACTCGAACGGGGCCGGCACGTGTGGTGTGAGAAGCCGTTGGCCCTCGACCTGGCCGAGCTGGAGA TGGTCGAGCAGGCGGCGGCCGTGGGCGGCGGTGTTCTGATGGTGGGTCTCAACCGCAGGTTCTCCCCGGCGGTCGTCGCG GCCCGGCGGCGCCTGGCCGAGCGGGACGGCCCGCTGAGCCTGGTGTACCGGGTCGCGGCCGGTCCCGTACCCGCTGACCA CTGGTACGGCGACCGGGTCGAGGGCGGCCGGCTGCTGGGCGAGGTCTGCCACTTCGTCGACACCTGTGCGGCGCTGGCGG GCAGCGGGGTCGAGGCGGCGACAGTGGTGCCCGGCCGCGGTGGTGAGGCGCTGCTGGCCGAAGACCTGGCCGTGACGTTG CGGCACGTCGACGGAAGCCTGTCGACCATCGCGTACAGCTCCGCCCGCCCCCGGGCCTGCCGGAAGGAGACGGTCGAGGC TCTCGCCGGCCGGCGTCACCTGCGCATCGACGACTTCCGGGAGCTGGTGGTCGACGGCGGCTCGGAATGGAAGGGCGCGC AGGACAAGGGGCACCGGGCGGCGGCCGGTGCGTTCCTGCGGATGTGCCGCGGTGGCGCGACCGACGTGACGGCCGAGCTG ATCGCGTCGTCCCGGGCGACGCTCGTCGCCGCCGCGAGTCTCGACACCGGTCTTCCGCAGTCAGTGGAGGCGCCGCTCAC CGACCCGGCTGCCATCGATCCGGCCGTTCCTCGCCGCGCGAGTTCGGAACGGGAGAGCGCGGTCGGGGTACCGGCGGCGC GGACGGCGGAACCGGACAGCGCGCCGGCTGCTCGGCCGGCCACTCCGACCCGAAGCGACGAACCCGGCGCAGGCTGA
Upstream 100 bases:
>100_bases CAACTACGCTCCGCAACATGATGCGAGTGCGAGTGTCCGACCCGTCGCGGAGCCGCGGATCTTCTGCGCGGCAGGTCCAG GCGATGGGCCGGGATCTCCG
Downstream 100 bases:
>100_bases CCCTCCCTCCGCCCAGCGAGGGAAGAACGAACCGACCCCTCTGACACGGAAGGAGCTACCCGGTGGACCGGAGACAGGAG GAAGGGCAATCGTGCCTCGC
Product: oxidoreductase domain-containing protein
Products: NA
Alternate protein names: Anhydrofructose reductase; 1,5-anhydro-D-fructose reductase (1,5-anhydro-D-mannitol-forming) [H]
Number of amino acids: Translated: 798; Mature: 798
Protein sequence:
>798_residues MRQVVQAAGGGEVRVVDTPIPSIGATEVLVETAATIVSAGTERAVTTLARSGLLAKARARPDLVRRVAEKARADGIGEAV RSVRDRLASELPLGYSGAGRAVRVGTAVEGIRPGDLVVTGGAGWANHAEFQAVPGLLCARVPDGVPEADAAFATIAAIAL HGLRLAEVGPGAKVVVVGLGLIGQLAARIAMASGYDVAGVDLADLPLTTAAASGVRALRESGDATTAAVREWSRGRGADA VLICAAGRSGDPVMRATEFARDRAQLVVVGDVPLGLTRAPFYEKELVLRFARSYGPGRYERGYEEWGVDYPAGQVRWTEG RNQEAVLDLLAAGRLSVADLVTHAFPLEQAAAAYDLVATRREPYLAIRFDYPRRAELTEPVEGVLSTEGTPPAEGTAPTE GSTPGDARQVGQHTQRVARRVGPPGRRRGDRVGWIGAGNFSGSVLLPAFRAAGFDRFTSVASASGRSARAFADRHGFQGA ATGVDELLDDGDLDVVVIATPHSTHARLAAAALERGRHVWCEKPLALDLAELEMVEQAAAVGGGVLMVGLNRRFSPAVVA ARRRLAERDGPLSLVYRVAAGPVPADHWYGDRVEGGRLLGEVCHFVDTCAALAGSGVEAATVVPGRGGEALLAEDLAVTL RHVDGSLSTIAYSSARPRACRKETVEALAGRRHLRIDDFRELVVDGGSEWKGAQDKGHRAAAGAFLRMCRGGATDVTAEL IASSRATLVAAASLDTGLPQSVEAPLTDPAAIDPAVPRRASSERESAVGVPAARTAEPDSAPAARPATPTRSDEPGAG
Sequences:
>Translated_798_residues MRQVVQAAGGGEVRVVDTPIPSIGATEVLVETAATIVSAGTERAVTTLARSGLLAKARARPDLVRRVAEKARADGIGEAV RSVRDRLASELPLGYSGAGRAVRVGTAVEGIRPGDLVVTGGAGWANHAEFQAVPGLLCARVPDGVPEADAAFATIAAIAL HGLRLAEVGPGAKVVVVGLGLIGQLAARIAMASGYDVAGVDLADLPLTTAAASGVRALRESGDATTAAVREWSRGRGADA VLICAAGRSGDPVMRATEFARDRAQLVVVGDVPLGLTRAPFYEKELVLRFARSYGPGRYERGYEEWGVDYPAGQVRWTEG RNQEAVLDLLAAGRLSVADLVTHAFPLEQAAAAYDLVATRREPYLAIRFDYPRRAELTEPVEGVLSTEGTPPAEGTAPTE GSTPGDARQVGQHTQRVARRVGPPGRRRGDRVGWIGAGNFSGSVLLPAFRAAGFDRFTSVASASGRSARAFADRHGFQGA ATGVDELLDDGDLDVVVIATPHSTHARLAAAALERGRHVWCEKPLALDLAELEMVEQAAAVGGGVLMVGLNRRFSPAVVA ARRRLAERDGPLSLVYRVAAGPVPADHWYGDRVEGGRLLGEVCHFVDTCAALAGSGVEAATVVPGRGGEALLAEDLAVTL RHVDGSLSTIAYSSARPRACRKETVEALAGRRHLRIDDFRELVVDGGSEWKGAQDKGHRAAAGAFLRMCRGGATDVTAEL IASSRATLVAAASLDTGLPQSVEAPLTDPAAIDPAVPRRASSERESAVGVPAARTAEPDSAPAARPATPTRSDEPGAG >Mature_798_residues MRQVVQAAGGGEVRVVDTPIPSIGATEVLVETAATIVSAGTERAVTTLARSGLLAKARARPDLVRRVAEKARADGIGEAV RSVRDRLASELPLGYSGAGRAVRVGTAVEGIRPGDLVVTGGAGWANHAEFQAVPGLLCARVPDGVPEADAAFATIAAIAL HGLRLAEVGPGAKVVVVGLGLIGQLAARIAMASGYDVAGVDLADLPLTTAAASGVRALRESGDATTAAVREWSRGRGADA VLICAAGRSGDPVMRATEFARDRAQLVVVGDVPLGLTRAPFYEKELVLRFARSYGPGRYERGYEEWGVDYPAGQVRWTEG RNQEAVLDLLAAGRLSVADLVTHAFPLEQAAAAYDLVATRREPYLAIRFDYPRRAELTEPVEGVLSTEGTPPAEGTAPTE GSTPGDARQVGQHTQRVARRVGPPGRRRGDRVGWIGAGNFSGSVLLPAFRAAGFDRFTSVASASGRSARAFADRHGFQGA ATGVDELLDDGDLDVVVIATPHSTHARLAAAALERGRHVWCEKPLALDLAELEMVEQAAAVGGGVLMVGLNRRFSPAVVA ARRRLAERDGPLSLVYRVAAGPVPADHWYGDRVEGGRLLGEVCHFVDTCAALAGSGVEAATVVPGRGGEALLAEDLAVTL RHVDGSLSTIAYSSARPRACRKETVEALAGRRHLRIDDFRELVVDGGSEWKGAQDKGHRAAAGAFLRMCRGGATDVTAEL IASSRATLVAAASLDTGLPQSVEAPLTDPAAIDPAVPRRASSERESAVGVPAARTAEPDSAPAARPATPTRSDEPGAG
Specific function: Catalyzes the NADPH-specific reduction of 1,5-anhydro-D- fructose to 1,5-anhydro-D-mannitol [H]
COG id: COG1063
COG function: function code ER; Threonine dehydrogenase and related Zn-dependent dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the gfo/idh/mocA family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6319955, Length=323, Percent_Identity=27.2445820433437, Blast_Score=72, Evalue=4e-13, Organism=Saccharomyces cerevisiae, GI6322619, Length=323, Percent_Identity=27.2445820433437, Blast_Score=70, Evalue=9e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016040 - InterPro: IPR000683 - InterPro: IPR004104 [H]
Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]
EC number: =1.1.1.292 [H]
Molecular weight: Translated: 82999; Mature: 82999
Theoretical pI: Translated: 6.71; Mature: 6.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRQVVQAAGGGEVRVVDTPIPSIGATEVLVETAATIVSAGTERAVTTLARSGLLAKARAR CCCHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHCC PDLVRRVAEKARADGIGEAVRSVRDRLASELPLGYSGAGRAVRVGTAVEGIRPGDLVVTG HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHCCCCCCCEEEEC GAGWANHAEFQAVPGLLCARVPDGVPEADAAFATIAAIALHGLRLAEVGPGAKVVVVGLG CCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCEEEEEHHH LIGQLAARIAMASGYDVAGVDLADLPLTTAAASGVRALRESGDATTAAVREWSRGRGADA HHHHHHHHHHHHCCCCCCCCCHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCE VLICAAGRSGDPVMRATEFARDRAQLVVVGDVPLGLTRAPFYEKELVLRFARSYGPGRYE EEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHH RGYEEWGVDYPAGQVRWTEGRNQEAVLDLLAAGRLSVADLVTHAFPLEQAAAAYDLVATR CCHHHCCCCCCCCCEEECCCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHC REPYLAIRFDYPRRAELTEPVEGVLSTEGTPPAEGTAPTEGSTPGDARQVGQHTQRVARR CCCEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH VGPPGRRRGDRVGWIGAGNFSGSVLLPAFRAAGFDRFTSVASASGRSARAFADRHGFQGA CCCCCCCCCCCEEEEECCCCCCCCHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHCCCCCH ATGVDELLDDGDLDVVVIATPHSTHARLAAAALERGRHVWCEKPLALDLAELEMVEQAAA HCCHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHH VGGGVLMVGLNRRFSPAVVAARRRLAERDGPLSLVYRVAAGPVPADHWYGDRVEGGRLLG CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHH EVCHFVDTCAALAGSGVEAATVVPGRGGEALLAEDLAVTLRHVDGSLSTIAYSSARPRAC HHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHEEECCCCCHHH RKETVEALAGRRHLRIDDFRELVVDGGSEWKGAQDKGHRAAAGAFLRMCRGGATDVTAEL HHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHH IASSRATLVAAASLDTGLPQSVEAPLTDPAAIDPAVPRRASSERESAVGVPAARTAEPDS HHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCC APAARPATPTRSDEPGAG CCCCCCCCCCCCCCCCCC >Mature Secondary Structure MRQVVQAAGGGEVRVVDTPIPSIGATEVLVETAATIVSAGTERAVTTLARSGLLAKARAR CCCHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHCC PDLVRRVAEKARADGIGEAVRSVRDRLASELPLGYSGAGRAVRVGTAVEGIRPGDLVVTG HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHCCCCCCCEEEEC GAGWANHAEFQAVPGLLCARVPDGVPEADAAFATIAAIALHGLRLAEVGPGAKVVVVGLG CCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCEEEEEHHH LIGQLAARIAMASGYDVAGVDLADLPLTTAAASGVRALRESGDATTAAVREWSRGRGADA HHHHHHHHHHHHCCCCCCCCCHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCE VLICAAGRSGDPVMRATEFARDRAQLVVVGDVPLGLTRAPFYEKELVLRFARSYGPGRYE EEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHH RGYEEWGVDYPAGQVRWTEGRNQEAVLDLLAAGRLSVADLVTHAFPLEQAAAAYDLVATR CCHHHCCCCCCCCCEEECCCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHC REPYLAIRFDYPRRAELTEPVEGVLSTEGTPPAEGTAPTEGSTPGDARQVGQHTQRVARR CCCEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH VGPPGRRRGDRVGWIGAGNFSGSVLLPAFRAAGFDRFTSVASASGRSARAFADRHGFQGA CCCCCCCCCCCEEEEECCCCCCCCHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHCCCCCH ATGVDELLDDGDLDVVVIATPHSTHARLAAAALERGRHVWCEKPLALDLAELEMVEQAAA HCCHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHH VGGGVLMVGLNRRFSPAVVAARRRLAERDGPLSLVYRVAAGPVPADHWYGDRVEGGRLLG CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHH EVCHFVDTCAALAGSGVEAATVVPGRGGEALLAEDLAVTLRHVDGSLSTIAYSSARPRAC HHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHEEECCCCCHHH RKETVEALAGRRHLRIDDFRELVVDGGSEWKGAQDKGHRAAAGAFLRMCRGGATDVTAEL HHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHH IASSRATLVAAASLDTGLPQSVEAPLTDPAAIDPAVPRRASSERESAVGVPAARTAEPDS HHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCC APAARPATPTRSDEPGAG CCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11481430 [H]