| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is comEC [H]
Identifier: 158313937
GI number: 158313937
Start: 2527264
End: 2529702
Strand: Direct
Name: comEC [H]
Synonym: Franean1_2103
Alternate gene names: 158313937
Gene position: 2527264-2529702 (Clockwise)
Preceding gene: 158313936
Following gene: 158313938
Centisome position: 28.14
GC content: 77.49
Gene sequence:
>2439_bases ATGGTCGCCGTCGCGATGGAGACCGGGCTTGGCCTGCCGAGCGGCTCCGATGCGGCGAGTGGCGGTCGGCTGGACCTCCG CCTGGTCGGTCCTGCCGTCGCGGTCTGGGGCGGGGCGGCCGCGGCGGGGTACTGGGGCTTCGGGTCGGTGCTTCTCGGCG CCGCCGGCATGGTGCTGTGTGCGTGCCCGGTGGGGGTGCTGATCGCGCTGCATCAGGGTCCCGGCGGCCGGCTCGGCCGG CCGGGAGCGCTGGTGGCGTTCGTCGCCCTGGCGTTCCTCGCGGCCGGGGTTCTCGTGGGCGGGGCGGCCGCGCGGCCCCG GTTCACCGGCCCGCTCGCCGAGATGGCCCGGGCCCACCGGACCGTCAACGCCGAGGTCGTCCTGAGCGACGACCCGAAGA TCTCGGCGGCGGCGGCGCCGGCTGCCACTTCGGGCCCGCGGGAGGGGCCGACGGTCACCGCCCGGGCTCGACTCGAGGCC GTGACCGGACCCGGCTGCCGGCTGCGGGCCTCTGTGCCCGTGCTCCTGGTGGGGCGCGGCTCGGATCTCGCGAACTACCT GCCGGGGCAGCGGCTCGGCGTCCGCGCCGGGCTGGCGCCGGCGGGTCCGGGCGACACGATCGCGACGGTTCTGTTCGTCC GGGCACCGCCACGGGCACAGGGGCGCCCGGACGCCGTGCAACGGGCCGCCGGGTGGCTGCGGGCCGGCCTACGGGACGCC GCCGACGTGGTGCCCCAGCCCGCCGGCGGGCTGCTGCCGGCACTGGTCGTCGGTGACACCTCGGGCCTTGATCCCGGGCT GAAGGACGACTTTCGCACCGCCGGGATGAGCCATCTGACCGCGGTGTCCGGCGCCAATCTGGCGATTACCGCGGGGACGG TGCTGTTCCTGCTCGGGCGGCTCCGGCTCGGGGCCCGCTCCAGGGCGGTCGCCGCGGCCCTGGTCCTCGTCGGGTTCGTG ATCCTGGCCCGGCCGTCCGCCAGCGTGGTCCGGGCCGGAGCCATGGGACTGGTCGGCCTGGTCGCGCTCGCCGCGGGTCG GCCCCGCGCGGTGCTGGCGGCGCTGGCCACCGCGGTCATCGCCGTCGTGATGGCGGATCCGGCGTTCGCGCTGTCGGCCG GGTTCGCCCTGTCGGTGCTCGCGACGACCGGGATGATCGTGTGGGGGCCCGGCTGGAGTGACGTGCTGGAGCGCGGCCGC GCGGCCGGCCGGCTCGGCGAGGTCGTGGCGGTGGCCGCCGCCGCCCAGCTTGCCTGTACGCCGGTGCTGGCCTGGCTCGG TGGGGGCATCAGCATTGTCGCGATCCCGGCCAACGTGGTGGCGGCGCCGGCGGTCGCGCCCGCCACCGTGCTCGGCGTGT CGGCGATGGCCGTCGCCGCCGTCAACGACCCGGTCGCCGCGCTGCTCGCGCGGCTTGCGGGGCTGGCCTGCCACTGGCTC GTGCTGGTCGCGGACGTGGCCGCCGGTGTCCCCGCGGCCACGATCGGCTGGCCGGCGGGGCTCGCGGGGGCGGCCACCGC GCTTGGCTGCGTCGTACTGGTGGTGGCTCTGGCGCGCCGGCGTCCGACCCGCTGGCTGCTGGTGTCGGCGGTGGTGGGCC TGCTGGCGGCCCGGGTGCTCCTGCTGCCGAGGCTGGCGGGCTGGCCGCCGCCCGGCTGGCGGCTCGTTGCCTGCGATGTG GGCCAGGGCGACGGCCTGGTCCTGCGCGCCGGGCCGGCCTCGGCGGTCGTGGTCGACGTGGGTCCCGACCCGGCGCTGAT CGCCGCCTGCCTGGATGACCTCGGAGTACGCGAGGTGCCGCTGCTCATGCTCACCCATCTGCACGCGGATCACGCCGCCG GCCTCAGCGGGGTGGTGGGCCGGCTGCCGGTGGGGGAACTGGTGGTGAGCCCGCTGCCCGAGCCGGCCGACCAGTGGGAC GCGGTCGAGCGCGCGGCGCGGGCGGCGGGCGTGCCGGTGCGGGCCGTCACCGCCGGCGCCGCGGGGGAGACCGGAGCGGT CCGCTGGCGGGTGATCGGCCCGGAACGGGTCCTGCGGGGCACGGCCAGTGATCCGAACAACGCCAGTCTCGTGGTCCTGG CGGCGGTCGGCGGCGTGACGATACTGCTCACCGGGGATGCCGAGCCGCCGGAGCAGCGGCAGGTGGCGCGGCGTGGTCTC GGGCCCGTCGACGTGCTCAAGGTGGCTCACCACGGCTCCGAGGACCAGCTGCCGGAGTTCCTCACCCGGACCGGCGCCGA GGTGGCGCTGATCAGCGTCGGCGTCGACAACACCTACGGGCATCCCGCGCTGAGCACGCTGGCCGGCCTGCGCGCGGCCG GGATGGCGGTGGCCCGCACCGACCTGCACGGCACGGTGGCCGTCGTCGAGACGGCCGGCGGTGGCGTCCGGGCGGTGGCT CGCCGGCCCGGCCCGCGAGGGGGCGGGGCCGGCTCGTGA
Upstream 100 bases:
>100_bases GGGCGGCGAACGGGCCCTTCACCTCGCCCGACCAGCTCGGTGAGGTCTCCGGTGTCGGTGACCGGCGGCTGGCGGACCTG CTGCCCCTGGTGACGGCCTG
Downstream 100 bases:
>100_bases CATGCTGATCCACGTGCCGCCGCCCTCCGCCCCGCCACCGCTGGTCGTCGTGAGCGGCGACGAGGACCTCCTCGTCGCAC GTGCCGTCCGGGAGGTGCTC
Product: DNA internalization-related competence protein ComEC/Rec2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 812; Mature: 812
Protein sequence:
>812_residues MVAVAMETGLGLPSGSDAASGGRLDLRLVGPAVAVWGGAAAAGYWGFGSVLLGAAGMVLCACPVGVLIALHQGPGGRLGR PGALVAFVALAFLAAGVLVGGAAARPRFTGPLAEMARAHRTVNAEVVLSDDPKISAAAAPAATSGPREGPTVTARARLEA VTGPGCRLRASVPVLLVGRGSDLANYLPGQRLGVRAGLAPAGPGDTIATVLFVRAPPRAQGRPDAVQRAAGWLRAGLRDA ADVVPQPAGGLLPALVVGDTSGLDPGLKDDFRTAGMSHLTAVSGANLAITAGTVLFLLGRLRLGARSRAVAAALVLVGFV ILARPSASVVRAGAMGLVGLVALAAGRPRAVLAALATAVIAVVMADPAFALSAGFALSVLATTGMIVWGPGWSDVLERGR AAGRLGEVVAVAAAAQLACTPVLAWLGGGISIVAIPANVVAAPAVAPATVLGVSAMAVAAVNDPVAALLARLAGLACHWL VLVADVAAGVPAATIGWPAGLAGAATALGCVVLVVALARRRPTRWLLVSAVVGLLAARVLLLPRLAGWPPPGWRLVACDV GQGDGLVLRAGPASAVVVDVGPDPALIAACLDDLGVREVPLLMLTHLHADHAAGLSGVVGRLPVGELVVSPLPEPADQWD AVERAARAAGVPVRAVTAGAAGETGAVRWRVIGPERVLRGTASDPNNASLVVLAAVGGVTILLTGDAEPPEQRQVARRGL GPVDVLKVAHHGSEDQLPEFLTRTGAEVALISVGVDNTYGHPALSTLAGLRAAGMAVARTDLHGTVAVVETAGGGVRAVA RRPGPRGGGAGS
Sequences:
>Translated_812_residues MVAVAMETGLGLPSGSDAASGGRLDLRLVGPAVAVWGGAAAAGYWGFGSVLLGAAGMVLCACPVGVLIALHQGPGGRLGR PGALVAFVALAFLAAGVLVGGAAARPRFTGPLAEMARAHRTVNAEVVLSDDPKISAAAAPAATSGPREGPTVTARARLEA VTGPGCRLRASVPVLLVGRGSDLANYLPGQRLGVRAGLAPAGPGDTIATVLFVRAPPRAQGRPDAVQRAAGWLRAGLRDA ADVVPQPAGGLLPALVVGDTSGLDPGLKDDFRTAGMSHLTAVSGANLAITAGTVLFLLGRLRLGARSRAVAAALVLVGFV ILARPSASVVRAGAMGLVGLVALAAGRPRAVLAALATAVIAVVMADPAFALSAGFALSVLATTGMIVWGPGWSDVLERGR AAGRLGEVVAVAAAAQLACTPVLAWLGGGISIVAIPANVVAAPAVAPATVLGVSAMAVAAVNDPVAALLARLAGLACHWL VLVADVAAGVPAATIGWPAGLAGAATALGCVVLVVALARRRPTRWLLVSAVVGLLAARVLLLPRLAGWPPPGWRLVACDV GQGDGLVLRAGPASAVVVDVGPDPALIAACLDDLGVREVPLLMLTHLHADHAAGLSGVVGRLPVGELVVSPLPEPADQWD AVERAARAAGVPVRAVTAGAAGETGAVRWRVIGPERVLRGTASDPNNASLVVLAAVGGVTILLTGDAEPPEQRQVARRGL GPVDVLKVAHHGSEDQLPEFLTRTGAEVALISVGVDNTYGHPALSTLAGLRAAGMAVARTDLHGTVAVVETAGGGVRAVA RRPGPRGGGAGS >Mature_812_residues MVAVAMETGLGLPSGSDAASGGRLDLRLVGPAVAVWGGAAAAGYWGFGSVLLGAAGMVLCACPVGVLIALHQGPGGRLGR PGALVAFVALAFLAAGVLVGGAAARPRFTGPLAEMARAHRTVNAEVVLSDDPKISAAAAPAATSGPREGPTVTARARLEA VTGPGCRLRASVPVLLVGRGSDLANYLPGQRLGVRAGLAPAGPGDTIATVLFVRAPPRAQGRPDAVQRAAGWLRAGLRDA ADVVPQPAGGLLPALVVGDTSGLDPGLKDDFRTAGMSHLTAVSGANLAITAGTVLFLLGRLRLGARSRAVAAALVLVGFV ILARPSASVVRAGAMGLVGLVALAAGRPRAVLAALATAVIAVVMADPAFALSAGFALSVLATTGMIVWGPGWSDVLERGR AAGRLGEVVAVAAAAQLACTPVLAWLGGGISIVAIPANVVAAPAVAPATVLGVSAMAVAAVNDPVAALLARLAGLACHWL VLVADVAAGVPAATIGWPAGLAGAATALGCVVLVVALARRRPTRWLLVSAVVGLLAARVLLLPRLAGWPPPGWRLVACDV GQGDGLVLRAGPASAVVVDVGPDPALIAACLDDLGVREVPLLMLTHLHADHAAGLSGVVGRLPVGELVVSPLPEPADQWD AVERAARAAGVPVRAVTAGAAGETGAVRWRVIGPERVLRGTASDPNNASLVVLAAVGGVTILLTGDAEPPEQRQVARRGL GPVDVLKVAHHGSEDQLPEFLTRTGAEVALISVGVDNTYGHPALSTLAGLRAAGMAVARTDLHGTVAVVETAGGGVRAVA RRPGPRGGGAGS
Specific function: The comE operon is required for the binding and uptake of transforming DNA. ComEC is required for internalization but is dispensable for DNA binding [H]
COG id: COG0658
COG function: function code R; Predicted membrane metal-binding protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae REC2, N.gonorrhoeae ComA and E.coli YcaI [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 80444; Mature: 80444
Theoretical pI: Translated: 10.77; Mature: 10.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVAVAMETGLGLPSGSDAASGGRLDLRLVGPAVAVWGGAAAAGYWGFGSVLLGAAGMVLC CEEEEEECCCCCCCCCCCCCCCCEEEEEECCHHHHCCCCHHHCHHHHHHHHHHHHHHHHH ACPVGVLIALHQGPGGRLGRPGALVAFVALAFLAAGVLVGGAAARPRFTGPLAEMARAHR HHHHEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHC TVNAEVVLSDDPKISAAAAPAATSGPREGPTVTARARLEAVTGPGCRLRASVPVLLVGRG CCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEECCCEEEEECC SDLANYLPGQRLGVRAGLAPAGPGDTIATVLFVRAPPRAQGRPDAVQRAAGWLRAGLRDA CCHHHHCCCCCCCEECCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH ADVVPQPAGGLLPALVVGDTSGLDPGLKDDFRTAGMSHLTAVSGANLAITAGTVLFLLGR HHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHCHHHHHHCCCCCEEEHHHHHHHHHHH LRLGARSRAVAAALVLVGFVILARPSASVVRAGAMGLVGLVALAAGRPRAVLAALATAVI HHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH AVVMADPAFALSAGFALSVLATTGMIVWGPGWSDVLERGRAAGRLGEVVAVAAAAQLACT HHHHCCCHHHHHHHHHHHHHHHCCEEEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHH PVLAWLGGGISIVAIPANVVAAPAVAPATVLGVSAMAVAAVNDPVAALLARLAGLACHWL HHHHHHCCCEEEEEECCHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH VLVADVAAGVPAATIGWPAGLAGAATALGCVVLVVALARRRPTRWLLVSAVVGLLAARVL HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH LLPRLAGWPPPGWRLVACDVGQGDGLVLRAGPASAVVVDVGPDPALIAACLDDLGVREVP HHHHHCCCCCCCCEEEEEECCCCCCEEEEECCCCEEEEECCCCHHHHHHHHHHCCCCHHH LLMLTHLHADHAAGLSGVVGRLPVGELVVSPLPEPADQWDAVERAARAAGVPVRAVTAGA HHHHHHHHHHHHCCHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEECCC AGETGAVRWRVIGPERVLRGTASDPNNASLVVLAAVGGVTILLTGDAEPPEQRQVARRGL CCCCCCEEEEEECHHHHHCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCHHHHHHHHCC GPVDVLKVAHHGSEDQLPEFLTRTGAEVALISVGVDNTYGHPALSTLAGLRAAGMAVART CHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCHHEEEE DLHGTVAVVETAGGGVRAVARRPGPRGGGAGS CCCCEEEEEEECCCCEEEHCCCCCCCCCCCCC >Mature Secondary Structure MVAVAMETGLGLPSGSDAASGGRLDLRLVGPAVAVWGGAAAAGYWGFGSVLLGAAGMVLC CEEEEEECCCCCCCCCCCCCCCCEEEEEECCHHHHCCCCHHHCHHHHHHHHHHHHHHHHH ACPVGVLIALHQGPGGRLGRPGALVAFVALAFLAAGVLVGGAAARPRFTGPLAEMARAHR HHHHEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHC TVNAEVVLSDDPKISAAAAPAATSGPREGPTVTARARLEAVTGPGCRLRASVPVLLVGRG CCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEECCCEEEEECC SDLANYLPGQRLGVRAGLAPAGPGDTIATVLFVRAPPRAQGRPDAVQRAAGWLRAGLRDA CCHHHHCCCCCCCEECCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH ADVVPQPAGGLLPALVVGDTSGLDPGLKDDFRTAGMSHLTAVSGANLAITAGTVLFLLGR HHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHCHHHHHHCCCCCEEEHHHHHHHHHHH LRLGARSRAVAAALVLVGFVILARPSASVVRAGAMGLVGLVALAAGRPRAVLAALATAVI HHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH AVVMADPAFALSAGFALSVLATTGMIVWGPGWSDVLERGRAAGRLGEVVAVAAAAQLACT HHHHCCCHHHHHHHHHHHHHHHCCEEEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHH PVLAWLGGGISIVAIPANVVAAPAVAPATVLGVSAMAVAAVNDPVAALLARLAGLACHWL HHHHHHCCCEEEEEECCHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH VLVADVAAGVPAATIGWPAGLAGAATALGCVVLVVALARRRPTRWLLVSAVVGLLAARVL HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH LLPRLAGWPPPGWRLVACDVGQGDGLVLRAGPASAVVVDVGPDPALIAACLDDLGVREVP HHHHHCCCCCCCCEEEEEECCCCCCEEEEECCCCEEEEECCCCHHHHHHHHHHCCCCHHH LLMLTHLHADHAAGLSGVVGRLPVGELVVSPLPEPADQWDAVERAARAAGVPVRAVTAGA HHHHHHHHHHHHCCHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEECCC AGETGAVRWRVIGPERVLRGTASDPNNASLVVLAAVGGVTILLTGDAEPPEQRQVARRGL CCCCCCEEEEEECHHHHHCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCHHHHHHHHCC GPVDVLKVAHHGSEDQLPEFLTRTGAEVALISVGVDNTYGHPALSTLAGLRAAGMAVART CHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCHHEEEE DLHGTVAVVETAGGGVRAVARRPGPRGGGAGS CCCCEEEEEEECCCCEEEHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7968523; 8969508; 9384377 [H]