| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is hisA
Identifier: 158313758
GI number: 158313758
Start: 2304007
End: 2304744
Strand: Direct
Name: hisA
Synonym: Franean1_1923
Alternate gene names: 158313758
Gene position: 2304007-2304744 (Clockwise)
Preceding gene: 158313754
Following gene: 229595062
Centisome position: 25.65
GC content: 75.75
Gene sequence:
>738_bases GTGACGTTGACGCTGCTACCCGCGGTGGATGTGGCCGACGGCCTGGCCGTCCGCCTGGTCCAGGGCGAGGCCGGAACCGA GACCTCCTACGGCGACCCGCGCGAGGCGGCGCTGGCCTGGCAGCGCGACGGCGCCGAGTGGATCCATCTGGTCGACCTCG ACGCGGCCTTCGGCCGCGGGTCCAACCGTGACCTGATCGCCGAGGTCGTCCGCTCGGTCGACGTGGCCGTGGAGCTCTCC GGCGGCATTCGGGACGACGACTCCCTCGACGCCGCGCTGGCCACCGGCGCGGCCCGGGTCAACATCGGCACGGCGGCGCT CGAGGACCCGGAGTGGGTGCGCAAGGCGATCGACCGGGTCGGCGACCGGATCGCCGTGGGCCTGGACGTCCGTGGCACCA CCCTCGCCGCGCGGGGCTGGACGCGCGAGGGCGGCGAGCTCTACGAGGTGCTCGCACGGCTGGACGCCGACGGCTGCGCC CGCTACGTGCTCACCGACGTCCGCCGGGACGGGACCCTCACCGGCCCGAACGTCGAGCTGCTGCGGGCCGTGACGGCCGC GACGACCCGGCCGGTGGTCGCCAGCGGCGGCGTCTCCTCCCTGGAGGACCTGCGCGTGATCGCGACGGTGCCCGGTGTCG AGGGCGCCATTGTCGGCAAGGCGCTCTACGCCGGCGCGTTCACCCTGCCCGAGGCGCTCGCGGTCGCGGCGGAGGTGCCC GCGGCGGGCGCACCGTGA
Upstream 100 bases:
>100_bases ACGCTAGAGCGATCCGTGGTCGGAGGATCCCAGGTTGCGGCAACTCGTGTGGTCCGGTGGTGCGCCTCCTCGAGGGCCGG GTGACCCGTAGGGTGGGGAT
Downstream 100 bases:
>100_bases CCGTCGCCGTCCGGGTGATCCCCTGCCTTGACGTCGACGGCGGGCGGGTCGTCAAGGGTGTGAACTTCACCGACCTGCGG GACGCGGGCGACCCGGTCGA
Product: phosphoribosyl isomerase A
Products: NA
Alternate protein names: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
Number of amino acids: Translated: 245; Mature: 244
Protein sequence:
>245_residues MTLTLLPAVDVADGLAVRLVQGEAGTETSYGDPREAALAWQRDGAEWIHLVDLDAAFGRGSNRDLIAEVVRSVDVAVELS GGIRDDDSLDAALATGAARVNIGTAALEDPEWVRKAIDRVGDRIAVGLDVRGTTLAARGWTREGGELYEVLARLDADGCA RYVLTDVRRDGTLTGPNVELLRAVTAATTRPVVASGGVSSLEDLRVIATVPGVEGAIVGKALYAGAFTLPEALAVAAEVP AAGAP
Sequences:
>Translated_245_residues MTLTLLPAVDVADGLAVRLVQGEAGTETSYGDPREAALAWQRDGAEWIHLVDLDAAFGRGSNRDLIAEVVRSVDVAVELS GGIRDDDSLDAALATGAARVNIGTAALEDPEWVRKAIDRVGDRIAVGLDVRGTTLAARGWTREGGELYEVLARLDADGCA RYVLTDVRRDGTLTGPNVELLRAVTAATTRPVVASGGVSSLEDLRVIATVPGVEGAIVGKALYAGAFTLPEALAVAAEVP AAGAP >Mature_244_residues TLTLLPAVDVADGLAVRLVQGEAGTETSYGDPREAALAWQRDGAEWIHLVDLDAAFGRGSNRDLIAEVVRSVDVAVELSG GIRDDDSLDAALATGAARVNIGTAALEDPEWVRKAIDRVGDRIAVGLDVRGTTLAARGWTREGGELYEVLARLDADGCAR YVLTDVRRDGTLTGPNVELLRAVTAATTRPVVASGGVSSLEDLRVIATVPGVEGAIVGKALYAGAFTLPEALAVAAEVPA AGAP
Specific function: Histidine biosynthesis; fourth step. [C]
COG id: COG0106
COG function: function code E; Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the hisA/hisF family
Homologues:
Organism=Escherichia coli, GI87082028, Length=243, Percent_Identity=36.6255144032922, Blast_Score=119, Evalue=1e-28, Organism=Escherichia coli, GI1788336, Length=256, Percent_Identity=24.21875, Blast_Score=65, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): HIS4_FRASN (A8LGR0)
Other databases:
- EMBL: CP000820 - RefSeq: YP_001506266.1 - ProteinModelPortal: A8LGR0 - GeneID: 5670324 - GenomeReviews: CP000820_GR - KEGG: fre:Franean1_1923 - HOGENOM: HBG541613 - OMA: CARYVVT - ProtClustDB: PRK14024 - BioCyc: FSP1855:FRANEAN1_1923-MONOMER - GO: GO:0005737 - HAMAP: MF_01014 - InterPro: IPR013785 - InterPro: IPR006062 - InterPro: IPR010188 - InterPro: IPR023016 - InterPro: IPR011060 - Gene3D: G3DSA:3.20.20.70 - TIGRFAMs: TIGR01919
Pfam domain/function: PF00977 His_biosynth; SSF51366 RibP_bind_barrel
EC number: =5.3.1.16
Molecular weight: Translated: 25350; Mature: 25219
Theoretical pI: Translated: 4.27; Mature: 4.27
Prosite motif: PS00041 HTH_ARAC_FAMILY_1
Important sites: ACT_SITE 10-10 ACT_SITE 129-129
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLTLLPAVDVADGLAVRLVQGEAGTETSYGDPREAALAWQRDGAEWIHLVDLDAAFGRG CEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHEEECCCCCEEEEEEEHHHHCCC SNRDLIAEVVRSVDVAVELSGGIRDDDSLDAALATGAARVNIGTAALEDPEWVRKAIDRV CCHHHHHHHHHHHCEEEEECCCCCCCCCHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHC GDRIAVGLDVRGTTLAARGWTREGGELYEVLARLDADGCARYVLTDVRRDGTLTGPNVEL CCEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHH LRAVTAATTRPVVASGGVSSLEDLRVIATVPGVEGAIVGKALYAGAFTLPEALAVAAEVP HHHHHHHCCCCEEECCCCCCHHHEEEEEECCCCCCHHHHHHHHHCHHHHHHHHHHHHHCC AAGAP CCCCC >Mature Secondary Structure TLTLLPAVDVADGLAVRLVQGEAGTETSYGDPREAALAWQRDGAEWIHLVDLDAAFGRG EEEEECCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHEEECCCCCEEEEEEEHHHHCCC SNRDLIAEVVRSVDVAVELSGGIRDDDSLDAALATGAARVNIGTAALEDPEWVRKAIDRV CCHHHHHHHHHHHCEEEEECCCCCCCCCHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHC GDRIAVGLDVRGTTLAARGWTREGGELYEVLARLDADGCARYVLTDVRRDGTLTGPNVEL CCEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHH LRAVTAATTRPVVASGGVSSLEDLRVIATVPGVEGAIVGKALYAGAFTLPEALAVAAEVP HHHHHHHCCCCEEECCCCCCHHHEEEEEECCCCCCHHHHHHHHHCHHHHHHHHHHHHHCC AAGAP CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA