| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is pheT [H]
Identifier: 158313570
GI number: 158313570
Start: 2070860
End: 2073457
Strand: Direct
Name: pheT [H]
Synonym: Franean1_1734
Alternate gene names: 158313570
Gene position: 2070860-2073457 (Clockwise)
Preceding gene: 158313569
Following gene: 158313573
Centisome position: 23.06
GC content: 77.29
Gene sequence:
>2598_bases ATGTCGTGGCTGCGCGAGCAGGTCGGCGGCCTGCCGCCGGCGAAGGCCGTGGCCGACGCGCTGATCCGCGCCGGTTTCGA GGTCGAGGGCCTGGAGACCGTCGGTGGCGACCTGGCCGGCGTGGTGGTCGGCGAGGTGCTCTCGATCGAGGTCGTCGCGG CGAAGAAGAAGGACGTCCGCTTCTGCCGGGTGCGGGTCGCCGAGCTCGGTGAGCCGGGCGGGCCCGTAGCGTCCGGGGCG GAGGAGGCGGAGCCCGGTGTGCGCGGGATCGTCTGCGGCGCGTTCAACTTCGAGGTCGGCGACCGGGTGCCGGTCGCGCT GCCCGGCTCGGTGCTGCCCGGCGGGTTCGAGATCAGCTCCCGCAAGACGTACGGGCACGTCAGCGACGGGATGATCTGCT CGGCCCGGGAGCTGGGCCTCGGGGAGGACCACAGCGGGATCCTCGTCCTGCCCGCGGGCTCCCGGATCGGGACGGACGTC GCCGAGCTGCTCGGCCTCGGCGACGAGGTGCTCGACATCGCCGTCACCCCGGACCGGGGCTACGGCCTGTCGGTGCGCGG CATCGCCCGGGAATCGGCGACGGCTTTCGGCCTGCCGTTCGACGACCCCGGTGCCTGGGGCTCCGACGAGCCCGCCGCGA CCGGCGCCGGCTCCGCGACCGCCGGCTCCACGACCGGCGCCGGGGACGCGGCCGGATACCCGGTGCGGGTCGAGGACACC GTCGCCTGCGATCGTTACGTCGCCCGGACGGTCAGCGATGTCGACCCCGCCGCGCGCACCCCGCTGGACTGGTCGCGGCG GCTGTCGCTGGCCGGCATGCGGCCGATCTCCGCGCCGGTCGACGTCACCAACATCATCATGCTCGGTCTGGGGCAGCCCC TGCACGCGTTCGACCGGGCTAAGCTCACCGGCCCGATCGTCGTCCGCCGCGCCCGGGCGGGGGAGCGGCTGCTCACCCTG GACGGCGTCGACCGCGAGCTCGACCCCGAGGACCTCGTCATCGCCGACGACTCCGGGCCGATCGCGCTCGCCGGGGTGAT GGGCGGCGCCGCGACGGAGATCTCCGCGGCGACCACCGACATCGTGCTGGAGTCCGCGCACTTCGACGCGGTGACCGTCG CCCGGACGGCCCGCCGGCACCGCCTCGGCTCCGAGGCGTCGCGCCGCTTCGAGCGCGGGGTCGACCCGGCGCTCGCGCCG GTCGCCGCGCAGCGGGCTGTCGACCTGCTGCGCGAGCTGGCCGGAGCCACCGCCGAGCCCGGCGTCACCGACGTCGACCA CCGCGCGGCGCCGGAGCCGATCGTGTTCCCGCTCGGCGAGCCCGAGCGGCTGGCCGGCCGGCCCTACCCGGCGGATGCGA TCCGCCGCCGCCTCGCCGACGTCGGCTGCCTGCTGCGCGACCCGGAGCCCGCCGAGGCGGCGGGTAGTCCGGGCGAGCCG GGCGAGCTCCTGGTGACGGCGCCGTCCTGGCGGCCCGACCTGCTCCGCCCCGCGGACCTGGTCGAGGAGGTCGTGCGGCT CGAGGGGTACGACACCATCCCGGTGACGCTGCCGCTGCTGCCCGCCGGGCGCGGTCTCACCGCCGCCCAGCAGATGCGGC GGGCCGTCGGGCGGGCGCTCGCCGCCGACGGGTTCGTCGAGGTGCTCACCCTCCCGTTCGTCGCCGAGGACGCCGCCGAC GCGCTCGGCCTGCCCGCCGGCGACGAGCGCCGGGCGGCGGTGCGGGTGGCGAACCCGATCGCCCAGGACGCCTCCTACCT GCGCACCACGCTGCTGTCGGGGCTGATCGCCGCGGCCGTGCGCAACCTCGGCCGCGGCCAGACCGACCTCGCGCTGTTCG AGAGCGGGCTGGTCTTCCGGGAGCCGGCTGACGTGCCGGCCGTGCCGGCCGCGGTGGTCACGCCGCCGGTCGATCGCCGT CCCAGCGAGGACGAGATCAGCGCGCTGAACGCGGCCCTGCCCCGTCAGCCGCGTCATGTCGCGGTGGTGCTCACCGGCCT GCGCGAGCCCGCCGGCTGGTGGGGTCCGGGGCGGGCCGCCGACTGGGGCGACGCCCTGGCCGCCGCGCACGCCGCCGCCG CCGCGGTCGGCGTCGAGCTGGCCGTCGCCGCCGGGGACGCCATGCCCTGGCACCCCGGCCGCTGCGCCGAGCTGTCGGTC GACGGCCGGGTCGTCGGGTCCGCCGGGGAGCTGCACCCGCGGGTCCTCGGGTCCGCCGGGCTGCCGGCGCGCACCTGCGC GATGGAGCTGGACCTGGACGCGCTGATCGGCGCCGCGCTCGAGCGGCCGCCGGTCGCGGCTCCCGCGATCTCCACCTTCC CGCCGGCCGACCGTGACGTCGCGCTGGTCACCGCGGTGGACGTCTCCGTCTCCGCGGTGACCGAGGCGCTGCGGGCGGGG GCCGGGGACCTGCTGGAGGCGCTGTCGCTGTTCGACGTCTACGAGGGCGACCAGGTCGGCCCCGACCGCCGCTCGCTGGC CTTCGGCCTGCGCCTGCGGGCCCCGGACCGGACACTGACGGCGGCCGAGGCCAACGATGCCCGTGACGCGGCCGTCGCGG AGGCCACCAGCCGGACGGGCGCCGTCCTGCGCGGCTGA
Upstream 100 bases:
>100_bases ATGACCCGGCACGACGTCCGCGAGATCCGCGACTTCGTCGACGGGGACGTCCGCTTCGGCCTGCCGTTCGGAAGCGAGGG CTGACCCGGTGAGAATCGTG
Downstream 100 bases:
>100_bases CTGACGGCGGCCGCCGGCCGGCACCGGCGGCTGAGCGGCGGCCGCCGCCGCTCAGCCGCCGCCGGCCGCCGCCGCTCCGG TCGGCAGGACGAACGGGGCG
Product: phenylalanyl-tRNA synthetase subunit beta
Products: NA
Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS [H]
Number of amino acids: Translated: 865; Mature: 864
Protein sequence:
>865_residues MSWLREQVGGLPPAKAVADALIRAGFEVEGLETVGGDLAGVVVGEVLSIEVVAAKKKDVRFCRVRVAELGEPGGPVASGA EEAEPGVRGIVCGAFNFEVGDRVPVALPGSVLPGGFEISSRKTYGHVSDGMICSARELGLGEDHSGILVLPAGSRIGTDV AELLGLGDEVLDIAVTPDRGYGLSVRGIARESATAFGLPFDDPGAWGSDEPAATGAGSATAGSTTGAGDAAGYPVRVEDT VACDRYVARTVSDVDPAARTPLDWSRRLSLAGMRPISAPVDVTNIIMLGLGQPLHAFDRAKLTGPIVVRRARAGERLLTL DGVDRELDPEDLVIADDSGPIALAGVMGGAATEISAATTDIVLESAHFDAVTVARTARRHRLGSEASRRFERGVDPALAP VAAQRAVDLLRELAGATAEPGVTDVDHRAAPEPIVFPLGEPERLAGRPYPADAIRRRLADVGCLLRDPEPAEAAGSPGEP GELLVTAPSWRPDLLRPADLVEEVVRLEGYDTIPVTLPLLPAGRGLTAAQQMRRAVGRALAADGFVEVLTLPFVAEDAAD ALGLPAGDERRAAVRVANPIAQDASYLRTTLLSGLIAAAVRNLGRGQTDLALFESGLVFREPADVPAVPAAVVTPPVDRR PSEDEISALNAALPRQPRHVAVVLTGLREPAGWWGPGRAADWGDALAAAHAAAAAVGVELAVAAGDAMPWHPGRCAELSV DGRVVGSAGELHPRVLGSAGLPARTCAMELDLDALIGAALERPPVAAPAISTFPPADRDVALVTAVDVSVSAVTEALRAG AGDLLEALSLFDVYEGDQVGPDRRSLAFGLRLRAPDRTLTAAEANDARDAAVAEATSRTGAVLRG
Sequences:
>Translated_865_residues MSWLREQVGGLPPAKAVADALIRAGFEVEGLETVGGDLAGVVVGEVLSIEVVAAKKKDVRFCRVRVAELGEPGGPVASGA EEAEPGVRGIVCGAFNFEVGDRVPVALPGSVLPGGFEISSRKTYGHVSDGMICSARELGLGEDHSGILVLPAGSRIGTDV AELLGLGDEVLDIAVTPDRGYGLSVRGIARESATAFGLPFDDPGAWGSDEPAATGAGSATAGSTTGAGDAAGYPVRVEDT VACDRYVARTVSDVDPAARTPLDWSRRLSLAGMRPISAPVDVTNIIMLGLGQPLHAFDRAKLTGPIVVRRARAGERLLTL DGVDRELDPEDLVIADDSGPIALAGVMGGAATEISAATTDIVLESAHFDAVTVARTARRHRLGSEASRRFERGVDPALAP VAAQRAVDLLRELAGATAEPGVTDVDHRAAPEPIVFPLGEPERLAGRPYPADAIRRRLADVGCLLRDPEPAEAAGSPGEP GELLVTAPSWRPDLLRPADLVEEVVRLEGYDTIPVTLPLLPAGRGLTAAQQMRRAVGRALAADGFVEVLTLPFVAEDAAD ALGLPAGDERRAAVRVANPIAQDASYLRTTLLSGLIAAAVRNLGRGQTDLALFESGLVFREPADVPAVPAAVVTPPVDRR PSEDEISALNAALPRQPRHVAVVLTGLREPAGWWGPGRAADWGDALAAAHAAAAAVGVELAVAAGDAMPWHPGRCAELSV DGRVVGSAGELHPRVLGSAGLPARTCAMELDLDALIGAALERPPVAAPAISTFPPADRDVALVTAVDVSVSAVTEALRAG AGDLLEALSLFDVYEGDQVGPDRRSLAFGLRLRAPDRTLTAAEANDARDAAVAEATSRTGAVLRG >Mature_864_residues SWLREQVGGLPPAKAVADALIRAGFEVEGLETVGGDLAGVVVGEVLSIEVVAAKKKDVRFCRVRVAELGEPGGPVASGAE EAEPGVRGIVCGAFNFEVGDRVPVALPGSVLPGGFEISSRKTYGHVSDGMICSARELGLGEDHSGILVLPAGSRIGTDVA ELLGLGDEVLDIAVTPDRGYGLSVRGIARESATAFGLPFDDPGAWGSDEPAATGAGSATAGSTTGAGDAAGYPVRVEDTV ACDRYVARTVSDVDPAARTPLDWSRRLSLAGMRPISAPVDVTNIIMLGLGQPLHAFDRAKLTGPIVVRRARAGERLLTLD GVDRELDPEDLVIADDSGPIALAGVMGGAATEISAATTDIVLESAHFDAVTVARTARRHRLGSEASRRFERGVDPALAPV AAQRAVDLLRELAGATAEPGVTDVDHRAAPEPIVFPLGEPERLAGRPYPADAIRRRLADVGCLLRDPEPAEAAGSPGEPG ELLVTAPSWRPDLLRPADLVEEVVRLEGYDTIPVTLPLLPAGRGLTAAQQMRRAVGRALAADGFVEVLTLPFVAEDAADA LGLPAGDERRAAVRVANPIAQDASYLRTTLLSGLIAAAVRNLGRGQTDLALFESGLVFREPADVPAVPAAVVTPPVDRRP SEDEISALNAALPRQPRHVAVVLTGLREPAGWWGPGRAADWGDALAAAHAAAAAVGVELAVAAGDAMPWHPGRCAELSVD GRVVGSAGELHPRVLGSAGLPARTCAMELDLDALIGAALERPPVAAPAISTFPPADRDVALVTAVDVSVSAVTEALRAGA GDLLEALSLFDVYEGDQVGPDRRSLAFGLRLRAPDRTLTAAEANDARDAAVAEATSRTGAVLRG
Specific function: Unknown
COG id: COG0072
COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1788006, Length=871, Percent_Identity=34.0987370838117, Blast_Score=365, Evalue=1e-102,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005146 - InterPro: IPR005147 - InterPro: IPR009061 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004532 - InterPro: IPR020825 - InterPro: IPR005121 - InterPro: IPR002547 [H]
Pfam domain/function: PF03483 B3_4; PF03484 B5; PF03147 FDX-ACB; PF01588 tRNA_bind [H]
EC number: =6.1.1.20 [H]
Molecular weight: Translated: 89281; Mature: 89150
Theoretical pI: Translated: 4.52; Mature: 4.52
Prosite motif: PS50886 TRBD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSWLREQVGGLPPAKAVADALIRAGFEVEGLETVGGDLAGVVVGEVLSIEVVAAKKKDVR CCHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHEEEEEECCCCCHH FCRVRVAELGEPGGPVASGAEEAEPGVRGIVCGAFNFEVGDRVPVALPGSVLPGGFEISS HHHHHHHHCCCCCCCCCCCCHHCCCCCCEEEEEEEECCCCCCCCEECCCCCCCCCEEECC RKTYGHVSDGMICSARELGLGEDHSGILVLPAGSRIGTDVAELLGLGDEVLDIAVTPDRG CCCCCCCCCCEEEEHHHCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCEEEEECCCCC YGLSVRGIARESATAFGLPFDDPGAWGSDEPAATGAGSATAGSTTGAGDAAGYPVRVEDT CCEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCH VACDRYVARTVSDVDPAARTPLDWSRRLSLAGMRPISAPVDVTNIIMLGLGQPLHAFDRA HHHHHHHHHHHHHCCCHHCCCCCHHHHHHHCCCCCCCCCCCHHHHHEECCCCCHHHHHHC KLTGPIVVRRARAGERLLTLDGVDRELDPEDLVIADDSGPIALAGVMGGAATEISAATTD CCCCHHEEEECCCCCEEEEECCCCCCCCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHH IVLESAHFDAVTVARTARRHRLGSEASRRFERGVDPALAPVAAQRAVDLLRELAGATAEP HEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCC GVTDVDHRAAPEPIVFPLGEPERLAGRPYPADAIRRRLADVGCLLRDPEPAEAAGSPGEP CCCCCCCCCCCCCEEEECCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHCCCCCCCC GELLVTAPSWRPDLLRPADLVEEVVRLEGYDTIPVTLPLLPAGRGLTAAQQMRRAVGRAL CCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH AADGFVEVLTLPFVAEDAADALGLPAGDERRAAVRVANPIAQDASYLRTTLLSGLIAAAV HHCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHH RNLGRGQTDLALFESGLVFREPADVPAVPAAVVTPPVDRRPSEDEISALNAALPRQPRHV HHCCCCCHHHHHHHCCCEEECCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCEE AVVLTGLREPAGWWGPGRAADWGDALAAAHAAAAAVGVELAVAAGDAMPWHPGRCAELSV EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEE DGRVVGSAGELHPRVLGSAGLPARTCAMELDLDALIGAALERPPVAAPAISTFPPADRDV CCEEECCCCCCCHHHHCCCCCCHHHEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCE ALVTAVDVSVSAVTEALRAGAGDLLEALSLFDVYEGDQVGPDRRSLAFGLRLRAPDRTLT EEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHEEEEEEEECCCCEEE AAEANDARDAAVAEATSRTGAVLRG ECCCCCCHHHHHHHHHHCCCCCCCC >Mature Secondary Structure SWLREQVGGLPPAKAVADALIRAGFEVEGLETVGGDLAGVVVGEVLSIEVVAAKKKDVR CHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHEEEEEECCCCCHH FCRVRVAELGEPGGPVASGAEEAEPGVRGIVCGAFNFEVGDRVPVALPGSVLPGGFEISS HHHHHHHHCCCCCCCCCCCCHHCCCCCCEEEEEEEECCCCCCCCEECCCCCCCCCEEECC RKTYGHVSDGMICSARELGLGEDHSGILVLPAGSRIGTDVAELLGLGDEVLDIAVTPDRG CCCCCCCCCCEEEEHHHCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCEEEEECCCCC YGLSVRGIARESATAFGLPFDDPGAWGSDEPAATGAGSATAGSTTGAGDAAGYPVRVEDT CCEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCH VACDRYVARTVSDVDPAARTPLDWSRRLSLAGMRPISAPVDVTNIIMLGLGQPLHAFDRA HHHHHHHHHHHHHCCCHHCCCCCHHHHHHHCCCCCCCCCCCHHHHHEECCCCCHHHHHHC KLTGPIVVRRARAGERLLTLDGVDRELDPEDLVIADDSGPIALAGVMGGAATEISAATTD CCCCHHEEEECCCCCEEEEECCCCCCCCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHH IVLESAHFDAVTVARTARRHRLGSEASRRFERGVDPALAPVAAQRAVDLLRELAGATAEP HEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCC GVTDVDHRAAPEPIVFPLGEPERLAGRPYPADAIRRRLADVGCLLRDPEPAEAAGSPGEP CCCCCCCCCCCCCEEEECCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHCCCCCCCC GELLVTAPSWRPDLLRPADLVEEVVRLEGYDTIPVTLPLLPAGRGLTAAQQMRRAVGRAL CCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH AADGFVEVLTLPFVAEDAADALGLPAGDERRAAVRVANPIAQDASYLRTTLLSGLIAAAV HHCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHH RNLGRGQTDLALFESGLVFREPADVPAVPAAVVTPPVDRRPSEDEISALNAALPRQPRHV HHCCCCCHHHHHHHCCCEEECCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCEE AVVLTGLREPAGWWGPGRAADWGDALAAAHAAAAAVGVELAVAAGDAMPWHPGRCAELSV EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEE DGRVVGSAGELHPRVLGSAGLPARTCAMELDLDALIGAALERPPVAAPAISTFPPADRDV CCEEECCCCCCCHHHHCCCCCCHHHEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCE ALVTAVDVSVSAVTEALRAGAGDLLEALSLFDVYEGDQVGPDRRSLAFGLRLRAPDRTLT EEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHEEEEEEEECCCCEEE AAEANDARDAAVAEATSRTGAVLRG ECCCCCCHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11572948; 12692562 [H]