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The map label for this gene is ysgA [H]

Identifier: 158313567

GI number: 158313567

Start: 2067485

End: 2068417

Strand: Direct

Name: ysgA [H]

Synonym: Franean1_1731

Alternate gene names: 158313567

Gene position: 2067485-2068417 (Clockwise)

Preceding gene: 158313566

Following gene: 158313568

Centisome position: 23.02

GC content: 78.46

Gene sequence:

>933_bases
GTGTCGCCTCGCCACCTGCAGGGCCGCTCCGCGGGCCGGCCGACAGCCCTCACCGGCGACCGGTCCGGGCCGGCGACCGG
CGGCCGGTCCGCCCGCCCGTCGCCCGGGCGGGTGGACGGGCTGCGCTCGGCCCGGGTCGCCGCCGCCCGCCGGCTGCGGC
GGCCGGCGGATCGCCGCGGCGAGGGGTTGTTCCTCGTCGAGGGCGCGCAGGCGGTCACCGCGGCGCTCGCCGTGGGTGCC
CTGGTGGAGCTCTTCGTCGGCGAGTCGGCGGCGGAGCGGCACGCGGACCTGCTGGCCGCAGCCGACCTGCCGGTCCGGCT
CGTGACGGACGCCGCCGCCGCGGCGCTGTCGGAGACGGTGACCCCGCAGGGCCTGGTCGGCGTCGCCGAGCTGCCCCGCC
ACGAGCTGGCGGATCTGGGCCGGCCGCGCCTGGTCGCGGTCTGCGAGGGCGCGAACGACCCGGGGAACGCCGGTACCGTG
ATTCGCTCGGCCGACGCGGCCGGCGCCGACGCGGTCGTGTTCACCGGGAACAGCGTCGACCCCTTCGGGGGGAAGTGCGT
CCGGGCGTCCGCGGGGAGCCTGTTCCACCTGCCGGTCGTGGTCGCCGAGGACGGCCCCGCGGTCGTCGGGGCGCTGCGCC
GGGCCGGGTGCCTGGTGCTGGCGGCCTCGGGCCACGCGGCCCGCGACCTCGACGACCTGGCCGGCGTGGGCACGCTGGCG
GGGCCGACGGCCTGGGTCTTCGGCAACGAGGCGAGAGGCCTCACGCCGGCGACGGCGGCGTCCGCGGACGCGGCGGTGCG
GGTACCGGTGTACGGTCAGGCCGAGTCGCTGAATCTTGCGGTTGCGTCAGCGCTGTGTCTGTATGCGTCGGCGCGGGCGC
AGAGAATGGTCGGGTCCGCTACGTCCGGCGCCGGGGGAGGTGGGGCGCATTGA

Upstream 100 bases:

>100_bases
ACGACGCGGCCGCGTTCGCCGCCCTCGTCGAGGTCGCCCGTGCGGCGCTGCCCGCGGCGGCCGAGACCTCGGCCGCCTGA
GGCACCGCGGGCTTCCACCG

Downstream 100 bases:

>100_bases
CGCGCATCGTCGCGTCCACTTCCGGGCATTACGTCGCGGACGACGACCAGGTCGTCGGTGTACCGGATGTCGGTGTCACG
GAGGGTGACGCCGTAGCCGC

Product: tRNA/rRNA methyltransferase SpoU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MSPRHLQGRSAGRPTALTGDRSGPATGGRSARPSPGRVDGLRSARVAAARRLRRPADRRGEGLFLVEGAQAVTAALAVGA
LVELFVGESAAERHADLLAAADLPVRLVTDAAAAALSETVTPQGLVGVAELPRHELADLGRPRLVAVCEGANDPGNAGTV
IRSADAAGADAVVFTGNSVDPFGGKCVRASAGSLFHLPVVVAEDGPAVVGALRRAGCLVLAASGHAARDLDDLAGVGTLA
GPTAWVFGNEARGLTPATAASADAAVRVPVYGQAESLNLAVASALCLYASARAQRMVGSATSGAGGGGAH

Sequences:

>Translated_310_residues
MSPRHLQGRSAGRPTALTGDRSGPATGGRSARPSPGRVDGLRSARVAAARRLRRPADRRGEGLFLVEGAQAVTAALAVGA
LVELFVGESAAERHADLLAAADLPVRLVTDAAAAALSETVTPQGLVGVAELPRHELADLGRPRLVAVCEGANDPGNAGTV
IRSADAAGADAVVFTGNSVDPFGGKCVRASAGSLFHLPVVVAEDGPAVVGALRRAGCLVLAASGHAARDLDDLAGVGTLA
GPTAWVFGNEARGLTPATAASADAAVRVPVYGQAESLNLAVASALCLYASARAQRMVGSATSGAGGGGAH
>Mature_309_residues
SPRHLQGRSAGRPTALTGDRSGPATGGRSARPSPGRVDGLRSARVAAARRLRRPADRRGEGLFLVEGAQAVTAALAVGAL
VELFVGESAAERHADLLAAADLPVRLVTDAAAAALSETVTPQGLVGVAELPRHELADLGRPRLVAVCEGANDPGNAGTVI
RSADAAGADAVVFTGNSVDPFGGKCVRASAGSLFHLPVVVAEDGPAVVGALRRAGCLVLAASGHAARDLDDLAGVGTLAG
PTAWVFGNEARGLTPATAASADAAVRVPVYGQAESLNLAVASALCLYASARAQRMVGSATSGAGGGGAH

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=154, Percent_Identity=31.8181818181818, Blast_Score=77, Evalue=2e-14,
Organism=Escherichia coli, GI1790623, Length=157, Percent_Identity=26.7515923566879, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790083, Length=160, Percent_Identity=30.625, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 30772; Mature: 30641

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPRHLQGRSAGRPTALTGDRSGPATGGRSARPSPGRVDGLRSARVAAARRLRRPADRRG
CCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
EGLFLVEGAQAVTAALAVGALVELFVGESAAERHADLLAAADLPVRLVTDAAAAALSETV
CEEEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCC
TPQGLVGVAELPRHELADLGRPRLVAVCEGANDPGNAGTVIRSADAAGADAVVFTGNSVD
CCCCCCCHHHCCHHHHHHCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCEEEEECCCCC
PFGGKCVRASAGSLFHLPVVVAEDGPAVVGALRRAGCLVLAASGHAARDLDDLAGVGTLA
CCCCEEEEECCCCEEEEEEEEECCCCHHHHHHHHCCEEEEEECCCCHHCHHHHHCCCCCC
GPTAWVFGNEARGLTPATAASADAAVRVPVYGQAESLNLAVASALCLYASARAQRMVGSA
CCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
TSGAGGGGAH
CCCCCCCCCC
>Mature Secondary Structure 
SPRHLQGRSAGRPTALTGDRSGPATGGRSARPSPGRVDGLRSARVAAARRLRRPADRRG
CCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
EGLFLVEGAQAVTAALAVGALVELFVGESAAERHADLLAAADLPVRLVTDAAAAALSETV
CEEEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCC
TPQGLVGVAELPRHELADLGRPRLVAVCEGANDPGNAGTVIRSADAAGADAVVFTGNSVD
CCCCCCCHHHCCHHHHHHCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCEEEEECCCCC
PFGGKCVRASAGSLFHLPVVVAEDGPAVVGALRRAGCLVLAASGHAARDLDDLAGVGTLA
CCCCEEEEECCCCEEEEEEEEECCCCHHHHHHHHCCEEEEEECCCCHHCHHHHHCCCCCC
GPTAWVFGNEARGLTPATAASADAAVRVPVYGQAESLNLAVASALCLYASARAQRMVGSA
CCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
TSGAGGGGAH
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]