| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is yhcA [H]
Identifier: 158313487
GI number: 158313487
Start: 1970962
End: 1972887
Strand: Direct
Name: yhcA [H]
Synonym: Franean1_1651
Alternate gene names: 158313487
Gene position: 1970962-1972887 (Clockwise)
Preceding gene: 158313486
Following gene: 158313490
Centisome position: 21.94
GC content: 71.5
Gene sequence:
>1926_bases ATGACGGCCGTCACCAAGCACGGCGATCGCCGCTGGGCCGTCCTGGCCAACACGACCGCCGCGGTCTTCATGTCGGCGCT CGACGGCTCCATCGTCCTGATCGCCCTGCCGCCGATCTTCCTCGGCATCGACCTGGATCCGCTGGCGCCCGGTAACGTGA GCTATCTGCTATGGATGATCATGGGATACCGCCTGGTGCAGGCGGTGCTCGTCGTGCCGCTGGGGCGGCTGGGTGACATG TTCGGCCGGGTGCGGATCTACAACGCCGGCTTTGTGGTCTTCACCGTCGCCTCCATCCTGCTGTCCTTCGATCCCTTCCA CGGGCGCAGCGCCGCGATGTGGCTGATCGGCTGGCGCGTGCTGCAGGCGGTCGGCGGCTCCATGCTGGCCGCCAACTCGG CCGCGATCCTCACCGACGTGTTCCCGCCCGACCAGCGCGGTCTGGCGCTCGGCATCAACCAGGTCGCCGCGCTCGCCGGG CAGTTCATCGGCCTGGTCGCCGGCGGGGTGCTGGCCGTCCTGGACTGGCGTGCGGTGTTCTGGGTGAACGTGCCCGTCGG TGTGTTCGGCACCATCTGGGCCTACCGGACGCTGCGCGAGCCCGAGCGCCGGGACCGCCCGGAACGGGGCCGCTTCGACT GGTGGGGCAACATCACCTTCTCGGTGGGCCTGGGGGCGGTGCTGATCGCCGTCACCGAGGGCCTGCAGCCCTACAAGAAC CACGCGATGGCCTGGATCAGCCCCAAGGTCCTGGTGCTGCTCATCGGGGGCGTGGCGCTGCTGGCCGCCTTCGTCGTGAT CGAGAAGCGGTTCGAGTCGCCGATGTTCGAGCTCTCGCTGTTCCGTATCCGGGCCTTCAGCGCCGGGAACGCGGCCGGCC TGGCGGTGTCGGTCGCGCGCGGCGGTCTGCAGTTCATGCTGATCATCTGGCTGCAGGGGATCTGGCTGCCCCTGCACGGC TACGACTTCGACGACACCCCGTTCTGGGCCGGAATCTACCTGTTGCCACTGACCGCCGGTGTCCTCGTGGCAGGCCCGCT GTCGGGGTTCCTGTCCGACCGCTCCGGCGCCCGCGGCCTGGCCACCACCGGGATGCTGGTGTTCGCGGGCAGCTTCGTCG GCCTCATGCTGCTGCCCGTCAACTTCTCCTACTGGGCGTTCGGCCTGCTGATCACCGTGAACGGCATCGGCGCCGGAATG TTCGCCGCGCCGAACTCGTCCTCGATCATGAGCAGCGTCCCGGCGCACCTGCGCGGGGTCGGATCCGGGATGCGCTCGAC CTTCCAGAACGCCGGCGGCGCGCTGTCCATCGGGCTCTTCTTCTCACTCATGGTCGCCGGGCTGGCGGGCAGCCTGCCGG GCGCCTTCTCCGCCGGTCTGCGGGCGGAGGGCGTGCCCGCCGACGTCGCCCAGCAGGTCGGTTCCCTGCCCCCGGTCGCG TCGCTGTTCGCCGCGGTGCTCGGCCTGAACCCGGTCGAGCACCTGCTGAGCTCGACCAGCACGCTGGACGACCTGACGCC GGACCACCGGGCGACCGTCACCGGTCGCGAGTTCTTCCCCCACCTCATCTCGACGCCGTTCCACGACGGCCTCGTCGTCG TGTTCGTGGCCTCGGCCCTGCTCGGCCTCATCGCCGCGGCGGCGTCGGCGATGCGCGGTGCCCACCACGTCGAGCGGGAC CCGCTCGAGCCGGTCCCGCTCGCGGTGGGCCTCCTCGAGTCGGTGCCGGCGGAGCCCGTCCTCCTCGAGGCGTCGGGCCG TGATCGGGTCGGGACCGGTGCTGCCGGGGCCGACGTATCTGGGGCTGAGGTGCCCGGGGCGGACTCGCCCGGGGTCGACG CGGCCGGTCCCGGGCCCGGAGCGTCGGGTCCGGCTGGGCCGGGTCCGGGCGCGACCGGACCGCTCAGAGGCGGCCCCCTG GGGTGA
Upstream 100 bases:
>100_bases AGCAGCTCGCGCGGGCGCTGTCCAGCGGCTTCGACGACGACGAGCTGGCCTGCCTGAAGGCCGCCGCGCCGCTGCTCGAG CGCCTGGCGCAGCGCATCTG
Downstream 100 bases:
>100_bases CCAGTCCCGTCTCGTAGGCGACGACGACCGCCTGCACCCGGTCCCGCAGCCGCAGTTTGCCGAGGATCCGGGCCACATGA GTCTTCACCGTGGCCTCACT
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 641; Mature: 640
Protein sequence:
>641_residues MTAVTKHGDRRWAVLANTTAAVFMSALDGSIVLIALPPIFLGIDLDPLAPGNVSYLLWMIMGYRLVQAVLVVPLGRLGDM FGRVRIYNAGFVVFTVASILLSFDPFHGRSAAMWLIGWRVLQAVGGSMLAANSAAILTDVFPPDQRGLALGINQVAALAG QFIGLVAGGVLAVLDWRAVFWVNVPVGVFGTIWAYRTLREPERRDRPERGRFDWWGNITFSVGLGAVLIAVTEGLQPYKN HAMAWISPKVLVLLIGGVALLAAFVVIEKRFESPMFELSLFRIRAFSAGNAAGLAVSVARGGLQFMLIIWLQGIWLPLHG YDFDDTPFWAGIYLLPLTAGVLVAGPLSGFLSDRSGARGLATTGMLVFAGSFVGLMLLPVNFSYWAFGLLITVNGIGAGM FAAPNSSSIMSSVPAHLRGVGSGMRSTFQNAGGALSIGLFFSLMVAGLAGSLPGAFSAGLRAEGVPADVAQQVGSLPPVA SLFAAVLGLNPVEHLLSSTSTLDDLTPDHRATVTGREFFPHLISTPFHDGLVVVFVASALLGLIAAAASAMRGAHHVERD PLEPVPLAVGLLESVPAEPVLLEASGRDRVGTGAAGADVSGAEVPGADSPGVDAAGPGPGASGPAGPGPGATGPLRGGPL G
Sequences:
>Translated_641_residues MTAVTKHGDRRWAVLANTTAAVFMSALDGSIVLIALPPIFLGIDLDPLAPGNVSYLLWMIMGYRLVQAVLVVPLGRLGDM FGRVRIYNAGFVVFTVASILLSFDPFHGRSAAMWLIGWRVLQAVGGSMLAANSAAILTDVFPPDQRGLALGINQVAALAG QFIGLVAGGVLAVLDWRAVFWVNVPVGVFGTIWAYRTLREPERRDRPERGRFDWWGNITFSVGLGAVLIAVTEGLQPYKN HAMAWISPKVLVLLIGGVALLAAFVVIEKRFESPMFELSLFRIRAFSAGNAAGLAVSVARGGLQFMLIIWLQGIWLPLHG YDFDDTPFWAGIYLLPLTAGVLVAGPLSGFLSDRSGARGLATTGMLVFAGSFVGLMLLPVNFSYWAFGLLITVNGIGAGM FAAPNSSSIMSSVPAHLRGVGSGMRSTFQNAGGALSIGLFFSLMVAGLAGSLPGAFSAGLRAEGVPADVAQQVGSLPPVA SLFAAVLGLNPVEHLLSSTSTLDDLTPDHRATVTGREFFPHLISTPFHDGLVVVFVASALLGLIAAAASAMRGAHHVERD PLEPVPLAVGLLESVPAEPVLLEASGRDRVGTGAAGADVSGAEVPGADSPGVDAAGPGPGASGPAGPGPGATGPLRGGPL G >Mature_640_residues TAVTKHGDRRWAVLANTTAAVFMSALDGSIVLIALPPIFLGIDLDPLAPGNVSYLLWMIMGYRLVQAVLVVPLGRLGDMF GRVRIYNAGFVVFTVASILLSFDPFHGRSAAMWLIGWRVLQAVGGSMLAANSAAILTDVFPPDQRGLALGINQVAALAGQ FIGLVAGGVLAVLDWRAVFWVNVPVGVFGTIWAYRTLREPERRDRPERGRFDWWGNITFSVGLGAVLIAVTEGLQPYKNH AMAWISPKVLVLLIGGVALLAAFVVIEKRFESPMFELSLFRIRAFSAGNAAGLAVSVARGGLQFMLIIWLQGIWLPLHGY DFDDTPFWAGIYLLPLTAGVLVAGPLSGFLSDRSGARGLATTGMLVFAGSFVGLMLLPVNFSYWAFGLLITVNGIGAGMF AAPNSSSIMSSVPAHLRGVGSGMRSTFQNAGGALSIGLFFSLMVAGLAGSLPGAFSAGLRAEGVPADVAQQVGSLPPVAS LFAAVLGLNPVEHLLSSTSTLDDLTPDHRATVTGREFFPHLISTPFHDGLVVVFVASALLGLIAAAASAMRGAHHVERDP LEPVPLAVGLLESVPAEPVLLEASGRDRVGTGAAGADVSGAEVPGADSPGVDAAGPGPGASGPAGPGPGATGPLRGGPLG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. EmrB family [H]
Homologues:
Organism=Escherichia coli, GI87081983, Length=432, Percent_Identity=25.462962962963, Blast_Score=128, Evalue=1e-30, Organism=Escherichia coli, GI1790195, Length=340, Percent_Identity=28.5294117647059, Blast_Score=108, Evalue=1e-24, Organism=Escherichia coli, GI1788710, Length=456, Percent_Identity=23.9035087719298, Blast_Score=87, Evalue=3e-18, Organism=Escherichia coli, GI1789042, Length=354, Percent_Identity=26.5536723163842, Blast_Score=79, Evalue=9e-16, Organism=Escherichia coli, GI1788392, Length=445, Percent_Identity=25.6179775280899, Blast_Score=76, Evalue=5e-15, Organism=Saccharomyces cerevisiae, GI6324954, Length=424, Percent_Identity=24.5283018867925, Blast_Score=71, Evalue=5e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004638 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR001411 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 66543; Mature: 66412
Theoretical pI: Translated: 6.75; Mature: 6.75
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAVTKHGDRRWAVLANTTAAVFMSALDGSIVLIALPPIFLGIDLDPLAPGNVSYLLWMI CCCCCCCCCCEEEEEECCHHHHHHHHCCCCEEEEEECCEEEECCCCCCCCCHHHHHHHHH MGYRLVQAVLVVPLGRLGDMFGRVRIYNAGFVVFTVASILLSFDPFHGRSAAMWLIGWRV HHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH LQAVGGSMLAANSAAILTDVFPPDQRGLALGINQVAALAGQFIGLVAGGVLAVLDWRAVF HHHHCCCEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE WVNVPVGVFGTIWAYRTLREPERRDRPERGRFDWWGNITFSVGLGAVLIAVTEGLQPYKN EEECCHHHHHHHHHHHHHCCHHHHCCCCCCCCEEECCEEEEHHHHHHHHHHHHCCCHHHH HAMAWISPKVLVLLIGGVALLAAFVVIEKRFESPMFELSLFRIRAFSAGNAAGLAVSVAR CCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEHHHEEECCCCCCCEEEEEHH GGLQFMLIIWLQGIWLPLHGYDFDDTPFWAGIYLLPLTAGVLVAGPLSGFLSDRSGARGL CCHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCH ATTGMLVFAGSFVGLMLLPVNFSYWAFGLLITVNGIGAGMFAAPNSSSIMSSVPAHLRGV HHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEEEECCCCCEEECCCCCHHHHHHHHHHHHH GSGMRSTFQNAGGALSIGLFFSLMVAGLAGSLPGAFSAGLRAEGVPADVAQQVGSLPPVA HHHHHHHHHHCCCEEHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHHCCCCCHH SLFAAVLGLNPVEHLLSSTSTLDDLTPDHRATVTGREFFPHLISTPFHDGLVVVFVASAL HHHHHHHCCCHHHHHHHCCCHHHHCCCCCCEEECHHHHHHHHHCCCCCCCHHHHHHHHHH LGLIAAAASAMRGAHHVERDPLEPVPLAVGLLESVPAEPVLLEASGRDRVGTGAAGADVS HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCC GAEVPGADSPGVDAAGPGPGASGPAGPGPGATGPLRGGPLG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TAVTKHGDRRWAVLANTTAAVFMSALDGSIVLIALPPIFLGIDLDPLAPGNVSYLLWMI CCCCCCCCCEEEEEECCHHHHHHHHCCCCEEEEEECCEEEECCCCCCCCCHHHHHHHHH MGYRLVQAVLVVPLGRLGDMFGRVRIYNAGFVVFTVASILLSFDPFHGRSAAMWLIGWRV HHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH LQAVGGSMLAANSAAILTDVFPPDQRGLALGINQVAALAGQFIGLVAGGVLAVLDWRAVF HHHHCCCEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE WVNVPVGVFGTIWAYRTLREPERRDRPERGRFDWWGNITFSVGLGAVLIAVTEGLQPYKN EEECCHHHHHHHHHHHHHCCHHHHCCCCCCCCEEECCEEEEHHHHHHHHHHHHCCCHHHH HAMAWISPKVLVLLIGGVALLAAFVVIEKRFESPMFELSLFRIRAFSAGNAAGLAVSVAR CCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEHHHEEECCCCCCCEEEEEHH GGLQFMLIIWLQGIWLPLHGYDFDDTPFWAGIYLLPLTAGVLVAGPLSGFLSDRSGARGL CCHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCH ATTGMLVFAGSFVGLMLLPVNFSYWAFGLLITVNGIGAGMFAAPNSSSIMSSVPAHLRGV HHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEEEECCCCCEEECCCCCHHHHHHHHHHHHH GSGMRSTFQNAGGALSIGLFFSLMVAGLAGSLPGAFSAGLRAEGVPADVAQQVGSLPPVA HHHHHHHHHHCCCEEHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHHCCCCCHH SLFAAVLGLNPVEHLLSSTSTLDDLTPDHRATVTGREFFPHLISTPFHDGLVVVFVASAL HHHHHHHCCCHHHHHHHCCCHHHHCCCCCCEEECHHHHHHHHHCCCCCCCHHHHHHHHHH LGLIAAAASAMRGAHHVERDPLEPVPLAVGLLESVPAEPVLLEASGRDRVGTGAAGADVS HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCC GAEVPGADSPGVDAAGPGPGASGPAGPGPGATGPLRGGPLG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377; 8969498 [H]