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The map label for this gene is ydeS [H]

Identifier: 158313316

GI number: 158313316

Start: 1769516

End: 1770169

Strand: Direct

Name: ydeS [H]

Synonym: Franean1_1478

Alternate gene names: 158313316

Gene position: 1769516-1770169 (Clockwise)

Preceding gene: 158313315

Following gene: 158313317

Centisome position: 19.7

GC content: 70.8

Gene sequence:

>654_bases
ATGAACACCGTGACCGGCCACACCGCTCCGGACCGCCCCGGGCGTAAGCGCAGCGAGGAGAGCAGGCTGGCCATCCTGGC
CGCGGCCGTCGAGCTTGTGGGCGAGGTCGGCTACGCCGGCCTGACCATTGAGGGCATCGCGGCTCGCTCCGGCGCGGGCA
AGCAGACGATCTACCGATGGTGGCCGTCCAAGGCCGATGTGCTGCTCGACGCACTGGCCACCAAGGCCGACCTGCACGTA
CCCATCCCGGACGAGGGCAGCTACCCCGCCGACCTGCGCGCCTTCCTCGTGGCCAGCTTCCGGCTGGGCCGTGACCGGCG
GGTCGTCGATGCGCTGCGGGCGTTGATGGCCCACGCGCAGATCGACGAGGAGTTCCGGGACCGGTTTCGGGCCGCGTTCC
TGCAGCGCCGCCGGGACGCGCTCGGGATCATTCTCGACCGCGCTCGGACCCGCGGCGACCTGCCGCCCGTCCCCTCTCCG
GGCACCGCCGTCGACCTGGTCTTCGGCGTCATCTGGTACCGGATGCTCGCCACCAGCCAACTCGTCGACGAGAACCTGAT
CGACGAGCTCGTCGCCACGCTCGCCGAACCACGAACCGCCCAACCACAAACCGCCGTCGACACGCCCACCGCACCGGAGG
CGAGGAGCACATGA

Upstream 100 bases:

>100_bases
GGCCTCCAGATCATCGTTGCCAGGGAAGCCAGGCGCGCTCGTCCATGTGATCTGATCTCCTATTTCGAACCGGTACGTCT
CGTCTCGAATTGACGCTAGC

Downstream 100 bases:

>100_bases
CCGGCCCGCGGACCGTTCTGATCACCGGCGCCACCGACGGACACGGCCGTGCACTGGCGCACCGGCTCGCCGCCGAAGGC
ACCACCCTGATCCTGCACGG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MNTVTGHTAPDRPGRKRSEESRLAILAAAVELVGEVGYAGLTIEGIAARSGAGKQTIYRWWPSKADVLLDALATKADLHV
PIPDEGSYPADLRAFLVASFRLGRDRRVVDALRALMAHAQIDEEFRDRFRAAFLQRRRDALGIILDRARTRGDLPPVPSP
GTAVDLVFGVIWYRMLATSQLVDENLIDELVATLAEPRTAQPQTAVDTPTAPEARST

Sequences:

>Translated_217_residues
MNTVTGHTAPDRPGRKRSEESRLAILAAAVELVGEVGYAGLTIEGIAARSGAGKQTIYRWWPSKADVLLDALATKADLHV
PIPDEGSYPADLRAFLVASFRLGRDRRVVDALRALMAHAQIDEEFRDRFRAAFLQRRRDALGIILDRARTRGDLPPVPSP
GTAVDLVFGVIWYRMLATSQLVDENLIDELVATLAEPRTAQPQTAVDTPTAPEARST
>Mature_217_residues
MNTVTGHTAPDRPGRKRSEESRLAILAAAVELVGEVGYAGLTIEGIAARSGAGKQTIYRWWPSKADVLLDALATKADLHV
PIPDEGSYPADLRAFLVASFRLGRDRRVVDALRALMAHAQIDEEFRDRFRAAFLQRRRDALGIILDRARTRGDLPPVPSP
GTAVDLVFGVIWYRMLATSQLVDENLIDELVATLAEPRTAQPQTAVDTPTAPEARST

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 23735; Mature: 23735

Theoretical pI: Translated: 6.82; Mature: 6.82

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTVTGHTAPDRPGRKRSEESRLAILAAAVELVGEVGYAGLTIEGIAARSGAGKQTIYRW
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHCCCCCCCHHEEE
WPSKADVLLDALATKADLHVPIPDEGSYPADLRAFLVASFRLGRDRRVVDALRALMAHAQ
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
IDEEFRDRFRAAFLQRRRDALGIILDRARTRGDLPPVPSPGTAVDLVFGVIWYRMLATSQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
LVDENLIDELVATLAEPRTAQPQTAVDTPTAPEARST
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNTVTGHTAPDRPGRKRSEESRLAILAAAVELVGEVGYAGLTIEGIAARSGAGKQTIYRW
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHCCCCCCCHHEEE
WPSKADVLLDALATKADLHVPIPDEGSYPADLRAFLVASFRLGRDRRVVDALRALMAHAQ
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
IDEEFRDRFRAAFLQRRRDALGIILDRARTRGDLPPVPSPGTAVDLVFGVIWYRMLATSQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
LVDENLIDELVATLAEPRTAQPQTAVDTPTAPEARST
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]