| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158313208
Identifier: 158313208
GI number: 158313208
Start: 1644112
End: 1644996
Strand: Direct
Name: 158313208
Synonym: Franean1_1362
Alternate gene names: NA
Gene position: 1644112-1644996 (Clockwise)
Preceding gene: 158313207
Following gene: 158313209
Centisome position: 18.3
GC content: 74.35
Gene sequence:
>885_bases ATGATCCGGATAGCGGTGGCGGCGCTGGGCGGGGCGATGGTCGCCTACGGGTTGGTGACGGCCGGACGGGCGGTGACGGC ACGCCGTCCCGACCTTGGTGACGACCTTGCCGTCCTGTTCGCCGACGAGCCTGCGTCCAGTACCTCGACGCTGGCCCGGT GGGCGAGCAGGACCGTCCGACTGGCGCACGCCAGGGGCTGGAACCGTCTGCTGCGCGAGGACGACACGGTGATCGCGGGG CGCACCGTGGACGCGCACACCGCCGCTCGGATCGGCTACCTGCTGGCCGCCGTCGGCGCCATGGCGTTCCTGACGCTGCC GGGCACGTTGGCCCGTCTGCTGCCCCCTACCGCGGTCCCGCTGTTACTGCTCGGCGGGGCCCTGACCGGGGTTCAGCTCG CGGACCGGCCGGTGGTACGGCTTGCCGCGGCTCGTCGTCGGGACGCCGCCCTGGCGGTGGCCGCCTACACGGACCTGGTG CGGATCCTCGTCGTCGGCGGCCTGCCGTTGCACGCCGCGCTGAGCGCCGCCGCGGACACCGGCACGGGATGGACGTTCAC CCTGCTGCGGCGCAGCCTCGACGACGGCCGGCTGCGGGGCCTGCCCCCAGACGCGGCGCTGACAGCCCTCGCCGCCGACC TGCCGATCCCTGCCCTCGCGGATCTGGCCCGCACCGTCGGTTCGGCGCTGCGCGGGGCGTCCCCGGTTCTCGCGCTCGAG GCCCGGGCCGCGGCGATCCGCGCCGAGGAGACCGCCCGCGTCCGTGGGAGAGAAGCCGCCGCCGACGCGCAGATGGAACT GCCCGCCACCGCGGTGGCGATCGCGTTCGTGGCGTTCCTGACCTACCCGCTCCTGACGATGATCAACGGCGATGTCGGCT TCTGA
Upstream 100 bases:
>100_bases TCCTCGCCGTCCGCGCCCTGGCCGCGATGTCCCGGCCGCCACTCACACCGGACTTCTTCCCCGCCACCGCACTCGCGTCC GCGGCGGATCGGACATCTTG
Downstream 100 bases:
>100_bases GCCACACCGGGACGTCTACGTCCACTACCTCCACGTCCACTCCGTCCACGTCCGAGAGAACCGAGCCCGAGAGAGCCGAA TCCGAGGGGTCCGAGCCTGA
Product: type II secretion system protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 294; Mature: 294
Protein sequence:
>294_residues MIRIAVAALGGAMVAYGLVTAGRAVTARRPDLGDDLAVLFADEPASSTSTLARWASRTVRLAHARGWNRLLREDDTVIAG RTVDAHTAARIGYLLAAVGAMAFLTLPGTLARLLPPTAVPLLLLGGALTGVQLADRPVVRLAAARRRDAALAVAAYTDLV RILVVGGLPLHAALSAAADTGTGWTFTLLRRSLDDGRLRGLPPDAALTALAADLPIPALADLARTVGSALRGASPVLALE ARAAAIRAEETARVRGREAAADAQMELPATAVAIAFVAFLTYPLLTMINGDVGF
Sequences:
>Translated_294_residues MIRIAVAALGGAMVAYGLVTAGRAVTARRPDLGDDLAVLFADEPASSTSTLARWASRTVRLAHARGWNRLLREDDTVIAG RTVDAHTAARIGYLLAAVGAMAFLTLPGTLARLLPPTAVPLLLLGGALTGVQLADRPVVRLAAARRRDAALAVAAYTDLV RILVVGGLPLHAALSAAADTGTGWTFTLLRRSLDDGRLRGLPPDAALTALAADLPIPALADLARTVGSALRGASPVLALE ARAAAIRAEETARVRGREAAADAQMELPATAVAIAFVAFLTYPLLTMINGDVGF >Mature_294_residues MIRIAVAALGGAMVAYGLVTAGRAVTARRPDLGDDLAVLFADEPASSTSTLARWASRTVRLAHARGWNRLLREDDTVIAG RTVDAHTAARIGYLLAAVGAMAFLTLPGTLARLLPPTAVPLLLLGGALTGVQLADRPVVRLAAARRRDAALAVAAYTDLV RILVVGGLPLHAALSAAADTGTGWTFTLLRRSLDDGRLRGLPPDAALTALAADLPIPALADLARTVGSALRGASPVLALE ARAAAIRAEETARVRGREAAADAQMELPATAVAIAFVAFLTYPLLTMINGDVGF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30369; Mature: 30369
Theoretical pI: Translated: 10.83; Mature: 10.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRIAVAALGGAMVAYGLVTAGRAVTARRPDLGDDLAVLFADEPASSTSTLARWASRTVR CEEEEEEHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH LAHARGWNRLLREDDTVIAGRTVDAHTAARIGYLLAAVGAMAFLTLPGTLARLLPPTAVP HHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHH LLLLGGALTGVQLADRPVVRLAAARRRDAALAVAAYTDLVRILVVGGLPLHAALSAAADT HHHHCCHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC GTGWTFTLLRRSLDDGRLRGLPPDAALTALAADLPIPALADLARTVGSALRGASPVLALE CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEHH ARAAAIRAEETARVRGREAAADAQMELPATAVAIAFVAFLTYPLLTMINGDVGF HHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MIRIAVAALGGAMVAYGLVTAGRAVTARRPDLGDDLAVLFADEPASSTSTLARWASRTVR CEEEEEEHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH LAHARGWNRLLREDDTVIAGRTVDAHTAARIGYLLAAVGAMAFLTLPGTLARLLPPTAVP HHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHH LLLLGGALTGVQLADRPVVRLAAARRRDAALAVAAYTDLVRILVVGGLPLHAALSAAADT HHHHCCHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC GTGWTFTLLRRSLDDGRLRGLPPDAALTALAADLPIPALADLARTVGSALRGASPVLALE CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEHH ARAAAIRAEETARVRGREAAADAQMELPATAVAIAFVAFLTYPLLTMINGDVGF HHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA