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The map label for this gene is lytR [H]

Identifier: 158313159

GI number: 158313159

Start: 1578989

End: 1580551

Strand: Direct

Name: lytR [H]

Synonym: Franean1_1307

Alternate gene names: 158313159

Gene position: 1578989-1580551 (Clockwise)

Preceding gene: 158313157

Following gene: 158313162

Centisome position: 17.58

GC content: 71.53

Gene sequence:

>1563_bases
TTGGGCGGGCGACCGGGTGTGCCACGGGATACAGAGCGGCGGTCCAGAACGCTCCCGTTCGACCTGCGTGGCGGAGGCCG
GCCGCGCCGCAGCGCCTCCTCGCAGCTCTACCGGGTGCTCCTCGGCTTCCTGTCCGTCTTGGTCTTCGCCGTCACCGCGG
GTGGATGGGCCGTCTACACGTACGCCAACGGCCGCATCGGGCAGGTCAACCTCGACCTCGGTGACGACCGGCCCGAAGAG
TCCGAGGGCGCCACCAACTTCCTGCTCGTCGGCACGGACAGCCGTGCGGGCCTCGAAGGGCAGCGCTCCGATACCACGAT
CCTCGCCCACTTCGGTGAGGACGAGACCGTGACCATGCTGTCCATCCCGCGCGACACCTACGTCACGATCCCCGAGTACA
CCGACACCGACGGGCGCAAGCACGCCCGGCACAAGGCCAAGTTCAACTCCGCGATCTCCGACGGCGGCCCGTCGCTGCTG
GTCCGCACAATCGAGTCGCTGACCAACATGCGCATCGACCACTACGTCTCGATGGACCTGGCGGGCTTCAAGTCGATCAC
CGACGCGATCGGCGGCGTGGACGTCTGTGTCCTACCCTCGGACCACAAGGAGTTCGTCGCCGAGAACGGCCGGACGAGCC
GCAACACCAACGACCCGATGAGCGGCTTCGTCGGCGGCCCCGGGACGATCCACGTCGGCGGCGAGCAGGCCCTGGCGTTC
GTCCGGCAGCGGCACGGCCTGCCCGGCGGCGACATGGACCGCATCCGCCGTCAGCAGCAGTTCATGGGCGCGGTGTTCCA
CAAGGTCGTCGGCGGCGGGGTCCTGACGAACCCCAGCCAGCTCGAGCAGCTCCTGTCCACGGCCACCGGCGCGCTCACCC
TGGACGACAACACCGATCTCCTGGACCTGCGGAAGCTCGCGACCAGGCTGAAGGGCATCGCCTCGGGCGGGGTCGGCATG
CAGACCCTGCCGACCCATCCGCCCACACGGGCCGAGGGCGCGGTGAACGACCGCGGCGAGATCCTCGTCGGCGGGCAGCG
GGTGTCCGTCCAGTTCTACAATCCGGCTGATCTGGAGCGCATCGTCGCCCCGCTGGGCGGCTCCACAGGTTCGGCCCCGG
GCGCCGGCGGCGGCGCCGACGCCACCGAGGTCGCCGTCCAGGTCTTCAACGGCAGCGGGATCGCCGGACTGGCCGCCGAC
GCCGTCGACGAGCTGAACGGCAAGGGCTTCCGGGCAACCAACGCCGGCAACGCCTCCACCAGCAACTACGTGACCTCGCG
GGTCCGCTTCGGTACCGGCCTGGACGCCGCGGCGGCCACCCTGCAGACCCTCGTCCCCGGGGCACGCCTCGAGAGCGACT
CCGGCATCGACGGGCTCCAGCTGATCCTCGGATCGTCCTTCGACGGCATCGCCGACGTCCCGGTCACGGCTCCCGCGGCC
GCTCCGGCCGCCACCGGCGCCGAGACCGCCGCCGCCGGTACCACGGCAGCCGGAACCGTCCCCGGCGCGCCCGCGCCCCC
CGCCGCGGCCACCCCACCCCCCGCGCCGAACTGCACGTACTAG

Upstream 100 bases:

>100_bases
GCGGATGGGACCACCGGGTGGTCCCATCCGTGAGTGCATAGCCTATGATTTCCGCCCCAAGCGCTGTTTTCTGTGTGGTG
CGCCGGAGGGAGACCCTGGA

Downstream 100 bases:

>100_bases
CACATGATCATGGGATCGCCTGTGCCGCAGTCGTTCCTAAAGATCAACGATCTTAACGGTCCGCATTCCGTCCTCTTGAT
CTTGAGGGGGGTCGAACAGT

Product: cell envelope-related transcriptional attenuator

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 520; Mature: 519

Protein sequence:

>520_residues
MGGRPGVPRDTERRSRTLPFDLRGGGRPRRSASSQLYRVLLGFLSVLVFAVTAGGWAVYTYANGRIGQVNLDLGDDRPEE
SEGATNFLLVGTDSRAGLEGQRSDTTILAHFGEDETVTMLSIPRDTYVTIPEYTDTDGRKHARHKAKFNSAISDGGPSLL
VRTIESLTNMRIDHYVSMDLAGFKSITDAIGGVDVCVLPSDHKEFVAENGRTSRNTNDPMSGFVGGPGTIHVGGEQALAF
VRQRHGLPGGDMDRIRRQQQFMGAVFHKVVGGGVLTNPSQLEQLLSTATGALTLDDNTDLLDLRKLATRLKGIASGGVGM
QTLPTHPPTRAEGAVNDRGEILVGGQRVSVQFYNPADLERIVAPLGGSTGSAPGAGGGADATEVAVQVFNGSGIAGLAAD
AVDELNGKGFRATNAGNASTSNYVTSRVRFGTGLDAAAATLQTLVPGARLESDSGIDGLQLILGSSFDGIADVPVTAPAA
APAATGAETAAAGTTAAGTVPGAPAPPAAATPPPAPNCTY

Sequences:

>Translated_520_residues
MGGRPGVPRDTERRSRTLPFDLRGGGRPRRSASSQLYRVLLGFLSVLVFAVTAGGWAVYTYANGRIGQVNLDLGDDRPEE
SEGATNFLLVGTDSRAGLEGQRSDTTILAHFGEDETVTMLSIPRDTYVTIPEYTDTDGRKHARHKAKFNSAISDGGPSLL
VRTIESLTNMRIDHYVSMDLAGFKSITDAIGGVDVCVLPSDHKEFVAENGRTSRNTNDPMSGFVGGPGTIHVGGEQALAF
VRQRHGLPGGDMDRIRRQQQFMGAVFHKVVGGGVLTNPSQLEQLLSTATGALTLDDNTDLLDLRKLATRLKGIASGGVGM
QTLPTHPPTRAEGAVNDRGEILVGGQRVSVQFYNPADLERIVAPLGGSTGSAPGAGGGADATEVAVQVFNGSGIAGLAAD
AVDELNGKGFRATNAGNASTSNYVTSRVRFGTGLDAAAATLQTLVPGARLESDSGIDGLQLILGSSFDGIADVPVTAPAA
APAATGAETAAAGTTAAGTVPGAPAPPAAATPPPAPNCTY
>Mature_519_residues
GGRPGVPRDTERRSRTLPFDLRGGGRPRRSASSQLYRVLLGFLSVLVFAVTAGGWAVYTYANGRIGQVNLDLGDDRPEES
EGATNFLLVGTDSRAGLEGQRSDTTILAHFGEDETVTMLSIPRDTYVTIPEYTDTDGRKHARHKAKFNSAISDGGPSLLV
RTIESLTNMRIDHYVSMDLAGFKSITDAIGGVDVCVLPSDHKEFVAENGRTSRNTNDPMSGFVGGPGTIHVGGEQALAFV
RQRHGLPGGDMDRIRRQQQFMGAVFHKVVGGGVLTNPSQLEQLLSTATGALTLDDNTDLLDLRKLATRLKGIASGGVGMQ
TLPTHPPTRAEGAVNDRGEILVGGQRVSVQFYNPADLERIVAPLGGSTGSAPGAGGGADATEVAVQVFNGSGIAGLAADA
VDELNGKGFRATNAGNASTSNYVTSRVRFGTGLDAAAATLQTLVPGARLESDSGIDGLQLILGSSFDGIADVPVTAPAAA
PAATGAETAAAGTTAAGTVPGAPAPPAAATPPPAPNCTY

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 53713; Mature: 53581

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGRPGVPRDTERRSRTLPFDLRGGGRPRRSASSQLYRVLLGFLSVLVFAVTAGGWAVYT
CCCCCCCCCCHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
YANGRIGQVNLDLGDDRPEESEGATNFLLVGTDSRAGLEGQRSDTTILAHFGEDETVTML
EECCEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCEEEEE
SIPRDTYVTIPEYTDTDGRKHARHKAKFNSAISDGGPSLLVRTIESLTNMRIDHYVSMDL
ECCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHEEEHHH
AGFKSITDAIGGVDVCVLPSDHKEFVAENGRTSRNTNDPMSGFVGGPGTIHVGGEQALAF
HHHHHHHHHHCCCEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHH
VRQRHGLPGGDMDRIRRQQQFMGAVFHKVVGGGVLTNPSQLEQLLSTATGALTLDDNTDL
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEECCCCCH
LDLRKLATRLKGIASGGVGMQTLPTHPPTRAEGAVNDRGEILVGGQRVSVQFYNPADLER
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCEEEEEEEECCHHHHH
IVAPLGGSTGSAPGAGGGADATEVAVQVFNGSGIAGLAADAVDELNGKGFRATNAGNAST
HHHHCCCCCCCCCCCCCCCCHHEEEEEEECCCCCCHHHHHHHHHHCCCCEEECCCCCCCC
SNYVTSRVRFGTGLDAAAATLQTLVPGARLESDSGIDGLQLILGSSFDGIADVPVTAPAA
CHHHHHHEECCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC
APAATGAETAAAGTTAAGTVPGAPAPPAAATPPPAPNCTY
CCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GGRPGVPRDTERRSRTLPFDLRGGGRPRRSASSQLYRVLLGFLSVLVFAVTAGGWAVYT
CCCCCCCCCHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
YANGRIGQVNLDLGDDRPEESEGATNFLLVGTDSRAGLEGQRSDTTILAHFGEDETVTML
EECCEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCEEEEE
SIPRDTYVTIPEYTDTDGRKHARHKAKFNSAISDGGPSLLVRTIESLTNMRIDHYVSMDL
ECCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHEEEHHH
AGFKSITDAIGGVDVCVLPSDHKEFVAENGRTSRNTNDPMSGFVGGPGTIHVGGEQALAF
HHHHHHHHHHCCCEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHH
VRQRHGLPGGDMDRIRRQQQFMGAVFHKVVGGGVLTNPSQLEQLLSTATGALTLDDNTDL
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEECCCCCH
LDLRKLATRLKGIASGGVGMQTLPTHPPTRAEGAVNDRGEILVGGQRVSVQFYNPADLER
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCEEEEEEEECCHHHHH
IVAPLGGSTGSAPGAGGGADATEVAVQVFNGSGIAGLAADAVDELNGKGFRATNAGNAST
HHHHCCCCCCCCCCCCCCCCHHEEEEEEECCCCCCHHHHHHHHHHCCCCEEECCCCCCCC
SNYVTSRVRFGTGLDAAAATLQTLVPGARLESDSGIDGLQLILGSSFDGIADVPVTAPAA
CHHHHHHEECCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC
APAATGAETAAAGTTAAGTVPGAPAPPAAATPPPAPNCTY
CCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12663927 [H]