| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is 158313109
Identifier: 158313109
GI number: 158313109
Start: 1513218
End: 1513880
Strand: Direct
Name: 158313109
Synonym: Franean1_1257
Alternate gene names: NA
Gene position: 1513218-1513880 (Clockwise)
Preceding gene: 158313107
Following gene: 158313110
Centisome position: 16.85
GC content: 67.27
Gene sequence:
>663_bases GTGGCGCTGCTCGTCCTGATCTCCGGGTGCGGGGCGTCCAGTTACGACTATGTGACGAACAAAGATGACGGCGCGTTCCT GAAGGTGCCTGCGGCCTGGACGTATCAGGAGATGCCCGGGCCGGCCCTGTTCGGCATCGACGCCCGCAATGTGAGCCCCG AGATGTTGCGCGGCCTGATGTCACGCGAGTGGGTCGTCGGGCTGGATGCCGCCGAGAAGTTCGACGAGACCAGTCTGTTC GTTCCCGACGCGCCGCTACCGAAGGGCTTCGTCCAGGTTCGGCATCTTCTTCCGGAGGAGGCCAATGCGGTCTCCACGAA CGACCTGCGCAACTTCGTGGTCACCGTCGACGACGCGGTCGCGGCGCAGGAGGAGGCCGTCCGCCAGGACCCGTACGGCG CGCGCCTCGCGCCCAGCTTCCTGCTCCTGGCCGACGAGAAGGTGGCGCAGGACAGCGGCGTCCACGGCGTGCACCTGATC TACCAGGTCGCCACCGCGGCCGGGCTGGTCACCATCGACCAGACCAGCCTGCTGGACCAGAACCAGACCGTGCTCTACCA GCTCGTCCTGGCCTGTTCAGCGCTCTGCTACGCCCAGCACGGGGGGCAGATCGGCGAGGTCACGGGCTCGTTCACCATCA AGCCGACGGACCGAGGGCAGTAG
Upstream 100 bases:
>100_bases CGTGGAGGTTCCAAGTCGTGGCCGCTGGCCGCGACCGCTGCCACGACCCCGGCCGAGGCCGAGGCCGAGGTCAGCCCCGG TACTGGCCGTCGCCGCGGTG
Downstream 100 bases:
>100_bases GCATGAGCGCAACCGACCGGGCGACCAGTTCGGGTTCCTCCGCGCCCGCGGGGGAGACCACCGCGGGCGACGCCGCTTCC GACTCCTCGACCGCGCCGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 220; Mature: 219
Protein sequence:
>220_residues MALLVLISGCGASSYDYVTNKDDGAFLKVPAAWTYQEMPGPALFGIDARNVSPEMLRGLMSREWVVGLDAAEKFDETSLF VPDAPLPKGFVQVRHLLPEEANAVSTNDLRNFVVTVDDAVAAQEEAVRQDPYGARLAPSFLLLADEKVAQDSGVHGVHLI YQVATAAGLVTIDQTSLLDQNQTVLYQLVLACSALCYAQHGGQIGEVTGSFTIKPTDRGQ
Sequences:
>Translated_220_residues MALLVLISGCGASSYDYVTNKDDGAFLKVPAAWTYQEMPGPALFGIDARNVSPEMLRGLMSREWVVGLDAAEKFDETSLF VPDAPLPKGFVQVRHLLPEEANAVSTNDLRNFVVTVDDAVAAQEEAVRQDPYGARLAPSFLLLADEKVAQDSGVHGVHLI YQVATAAGLVTIDQTSLLDQNQTVLYQLVLACSALCYAQHGGQIGEVTGSFTIKPTDRGQ >Mature_219_residues ALLVLISGCGASSYDYVTNKDDGAFLKVPAAWTYQEMPGPALFGIDARNVSPEMLRGLMSREWVVGLDAAEKFDETSLFV PDAPLPKGFVQVRHLLPEEANAVSTNDLRNFVVTVDDAVAAQEEAVRQDPYGARLAPSFLLLADEKVAQDSGVHGVHLIY QVATAAGLVTIDQTSLLDQNQTVLYQLVLACSALCYAQHGGQIGEVTGSFTIKPTDRGQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23656; Mature: 23525
Theoretical pI: Translated: 4.30; Mature: 4.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALLVLISGCGASSYDYVTNKDDGAFLKVPAAWTYQEMPGPALFGIDARNVSPEMLRGLM CEEEEEEECCCCCCCCCEECCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCHHHHHHHH SREWVVGLDAAEKFDETSLFVPDAPLPKGFVQVRHLLPEEANAVSTNDLRNFVVTVDDAV CCCEEEECCHHHHCCCCEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECHHH AAQEEAVRQDPYGARLAPSFLLLADEKVAQDSGVHGVHLIYQVATAAGLVTIDQTSLLDQ HHHHHHHHCCCCCCCCCCEEEEEECCHHHHCCCCCHHHHHHHHHHHHCEEEECCHHHCCC NQTVLYQLVLACSALCYAQHGGQIGEVTGSFTIKPTDRGQ CHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEECCCCCCC >Mature Secondary Structure ALLVLISGCGASSYDYVTNKDDGAFLKVPAAWTYQEMPGPALFGIDARNVSPEMLRGLM EEEEEEECCCCCCCCCEECCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCHHHHHHHH SREWVVGLDAAEKFDETSLFVPDAPLPKGFVQVRHLLPEEANAVSTNDLRNFVVTVDDAV CCCEEEECCHHHHCCCCEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECHHH AAQEEAVRQDPYGARLAPSFLLLADEKVAQDSGVHGVHLIYQVATAAGLVTIDQTSLLDQ HHHHHHHHCCCCCCCCCCEEEEEECCHHHHCCCCCHHHHHHHHHHHHCEEEECCHHHCCC NQTVLYQLVLACSALCYAQHGGQIGEVTGSFTIKPTDRGQ CHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA