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The map label for this gene is rbfA [H]

Identifier: 158313036

GI number: 158313036

Start: 1409043

End: 1409612

Strand: Direct

Name: rbfA [H]

Synonym: Franean1_1184

Alternate gene names: 158313036

Gene position: 1409043-1409612 (Clockwise)

Preceding gene: 158313035

Following gene: 158313037

Centisome position: 15.69

GC content: 73.68

Gene sequence:

>570_bases
GTGGCTGATCCGGCTCGTGCGCGCCGGTTGGCGGTGCGGATCCGTGAGGTCGTCGCGTCCACGCTGGAACGCGGTGTGAA
GGACCCCCGGCTGGGGATGGTGACGATCACCGACGCGCGGGTCACCCCGGACCTGATGGACGCGACGGTCTTCTACACGG
TCTACGGCGACGACGTGGCACGGCAGGCGTCCGCCGCCGCGCTGGAGTCCGCCAAGGGCATGCTGCGCAGCCAGGTGGGC
CGGGCGACCGGGATCAAGGTCACCCCGACGTTGACGTTCGTGCACGACCGGCTGCCGGACGACGCGCGGCACCTGGAGGA
CCTGCTCGACGTCGCTCGCCGGCGCGACGAGGAGCTCGCCCGGGTGCGCCAGGACGCGACGCCCGCCGGCGAGCCCGATC
CCTACCGGCGCCCCCGGGACGCCGACGAGCTCGACGGCGACCCGCTCGACGCCCTGGCGGATGCCGGGCCCGGCGACGGT
CTCACTGACGGATTCGGTGACGGGTTCGGCGGTGACGGACCGCAGGCCGGTGGGGACACCACAGTCGCCCGGCAGGAGTC
GGCGTCATGA

Upstream 100 bases:

>100_bases
GGGACAACAGCAAGGGCAGAAACAGTGAGGTGTCGACCGGTTCGGCCGGGCACCGTGGTGTCCGCCACCCGGGTCGACCG
GGCGACGAGGGAGGTGGACG

Downstream 100 bases:

>100_bases
CGGTCATGTCCACGGGTACGGAGTCCGACGGTCGCCCGGCTTCAGTCGGAGGGTCGGGCGGCGCCTCGGCGCCCACCGCG
GTCCAGCTCGCGTCGCGGCA

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MADPARARRLAVRIREVVASTLERGVKDPRLGMVTITDARVTPDLMDATVFYTVYGDDVARQASAAALESAKGMLRSQVG
RATGIKVTPTLTFVHDRLPDDARHLEDLLDVARRRDEELARVRQDATPAGEPDPYRRPRDADELDGDPLDALADAGPGDG
LTDGFGDGFGGDGPQAGGDTTVARQESAS

Sequences:

>Translated_189_residues
MADPARARRLAVRIREVVASTLERGVKDPRLGMVTITDARVTPDLMDATVFYTVYGDDVARQASAAALESAKGMLRSQVG
RATGIKVTPTLTFVHDRLPDDARHLEDLLDVARRRDEELARVRQDATPAGEPDPYRRPRDADELDGDPLDALADAGPGDG
LTDGFGDGFGGDGPQAGGDTTVARQESAS
>Mature_188_residues
ADPARARRLAVRIREVVASTLERGVKDPRLGMVTITDARVTPDLMDATVFYTVYGDDVARQASAAALESAKGMLRSQVGR
ATGIKVTPTLTFVHDRLPDDARHLEDLLDVARRRDEELARVRQDATPAGEPDPYRRPRDADELDGDPLDALADAGPGDGL
TDGFGDGFGGDGPQAGGDTTVARQESAS

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

Organism=Escherichia coli, GI1789558, Length=116, Percent_Identity=33.6206896551724, Blast_Score=68, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 20184; Mature: 20052

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: PS00387 PPASE ; PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADPARARRLAVRIREVVASTLERGVKDPRLGMVTITDARVTPDLMDATVFYTVYGDDVA
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHEEEEEECCCHHH
RQASAAALESAKGMLRSQVGRATGIKVTPTLTFVHDRLPDDARHLEDLLDVARRRDEELA
HHHHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
RVRQDATPAGEPDPYRRPRDADELDGDPLDALADAGPGDGLTDGFGDGFGGDGPQAGGDT
HHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
TVARQESAS
CCCCCCCCC
>Mature Secondary Structure 
ADPARARRLAVRIREVVASTLERGVKDPRLGMVTITDARVTPDLMDATVFYTVYGDDVA
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHEEEEEECCCHHH
RQASAAALESAKGMLRSQVGRATGIKVTPTLTFVHDRLPDDARHLEDLLDVARRRDEELA
HHHHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
RVRQDATPAGEPDPYRRPRDADELDGDPLDALADAGPGDGLTDGFGDGFGGDGPQAGGDT
HHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
TVARQESAS
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA