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The map label for this gene is xerC [H]

Identifier: 158313011

GI number: 158313011

Start: 1380808

End: 1381842

Strand: Direct

Name: xerC [H]

Synonym: Franean1_1159

Alternate gene names: 158313011

Gene position: 1380808-1381842 (Clockwise)

Preceding gene: 158313010

Following gene: 158313013

Centisome position: 15.37

GC content: 75.46

Gene sequence:

>1035_bases
ATGGGGACGGGTGGCGATCCCGCGGCCACGGCCCGCGGTGGCCGTGGTGACAGCGCTGGTGGCGGCAACGGCGGCCGCGC
TGGCGCAGGTCCTGGTGACGGTGATAGAGGCAGTGGCGGCGACGGCTGGGCGGGTGCCGTCGAGGCTTTCGTGCGCCATC
TGGTCGCCGAACGGGATCGTTCGCCGGAAACCGTCCGGGCCTATCGCGCCGATCTCGCGGGCCTACGTGCGCACGCCGCC
GCGGCCGGCCGTACGGATCTCCTGGACCTGGATCTCGCCGTGCTCCGCGGGTGGCTGGCCGGCATGCGTTCCGCCGGAGC
GGCACCAGCCACCATCGCCCGCCGTGCGTCCCTCGCCAGGGTGTTCTCCGCCTTCGCCGCGCGGCGGGGATTCCTCCCCG
ATGACGTCGGGGCGCGGCTGGCGACCACCCGGGCGCCGCGGCGGATCCCCCAGGTACTCACCGCGGCACAGGCGGACCGG
CTGCTGGAGACACGGCCTCGGGGCGATCGTGCGCAGGACCCGCGCGACGTCGCGCTGAACCTGCGCGACGATCTGGTCCT
GGAGATCCTCTACGGCAGCGCGGTGCGGGTCTCCGAGCTGTGCCGGCTCGACATCGGTGACGTCGACCACGAGCGGCGCC
TCCTGCGCGTGCACGGCAAGGGCGGCCGCCAGCGCAGTGTGCCGTTCAGCGTGCCCGCGGCGGGCGCGCTCGACGTCTGG
CTCACCAGGGGCCGGCCCTACCTCGCGACGCGCGTCGAGGCGGCGCTGCTGCTCGGTGCCCGTGGCGGCCGGCTCGACCC
GCGTTCCGTGCGCCGGCTCGTCCAGGCGCGCGGCGCCGCCGCGGGGGTTCCCACCGGTCTGACGCCGCACGGCCTGCGCC
ACGGCGCGGCCACCCACATGGTCGAAGGCGGCGCGGACCTGCGCTCCGTGCAGGAACTGCTGGGCCACGCCAGCCTGTCG
ACCACGCAGATCTACACCCACGTCACCCCGGAGCGGCTGCGCGCCGCCTTCGACCAGGCCCATCCGCGGGCCTGA

Upstream 100 bases:

>100_bases
CGCCCCGAGGCCAGCCGACCTCGCCCGAGGGCGCGCCGCCGCCGGCGTCCGGCTCCACGCCGCCTTGACGCCTCGCTATT
CCGGCGGCCAAGGTCGCGCA

Downstream 100 bases:

>100_bases
CGTCCGCGCCACCGACCGATCCCCGTAGCGGACCGAGCCGCATGACGGAGTGCTCCCGTTCGGTGGCGTCCCCGAGTGCC
GGGCCGGCCGGCCTGCTGTC

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 343

Protein sequence:

>344_residues
MGTGGDPAATARGGRGDSAGGGNGGRAGAGPGDGDRGSGGDGWAGAVEAFVRHLVAERDRSPETVRAYRADLAGLRAHAA
AAGRTDLLDLDLAVLRGWLAGMRSAGAAPATIARRASLARVFSAFAARRGFLPDDVGARLATTRAPRRIPQVLTAAQADR
LLETRPRGDRAQDPRDVALNLRDDLVLEILYGSAVRVSELCRLDIGDVDHERRLLRVHGKGGRQRSVPFSVPAAGALDVW
LTRGRPYLATRVEAALLLGARGGRLDPRSVRRLVQARGAAAGVPTGLTPHGLRHGAATHMVEGGADLRSVQELLGHASLS
TTQIYTHVTPERLRAAFDQAHPRA

Sequences:

>Translated_344_residues
MGTGGDPAATARGGRGDSAGGGNGGRAGAGPGDGDRGSGGDGWAGAVEAFVRHLVAERDRSPETVRAYRADLAGLRAHAA
AAGRTDLLDLDLAVLRGWLAGMRSAGAAPATIARRASLARVFSAFAARRGFLPDDVGARLATTRAPRRIPQVLTAAQADR
LLETRPRGDRAQDPRDVALNLRDDLVLEILYGSAVRVSELCRLDIGDVDHERRLLRVHGKGGRQRSVPFSVPAAGALDVW
LTRGRPYLATRVEAALLLGARGGRLDPRSVRRLVQARGAAAGVPTGLTPHGLRHGAATHMVEGGADLRSVQELLGHASLS
TTQIYTHVTPERLRAAFDQAHPRA
>Mature_343_residues
GTGGDPAATARGGRGDSAGGGNGGRAGAGPGDGDRGSGGDGWAGAVEAFVRHLVAERDRSPETVRAYRADLAGLRAHAAA
AGRTDLLDLDLAVLRGWLAGMRSAGAAPATIARRASLARVFSAFAARRGFLPDDVGARLATTRAPRRIPQVLTAAQADRL
LETRPRGDRAQDPRDVALNLRDDLVLEILYGSAVRVSELCRLDIGDVDHERRLLRVHGKGGRQRSVPFSVPAAGALDVWL
TRGRPYLATRVEAALLLGARGGRLDPRSVRRLVQARGAAAGVPTGLTPHGLRHGAATHMVEGGADLRSVQELLGHASLST
TQIYTHVTPERLRAAFDQAHPRA

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=306, Percent_Identity=37.5816993464052, Blast_Score=171, Evalue=4e-44,
Organism=Escherichia coli, GI1790244, Length=298, Percent_Identity=35.2348993288591, Blast_Score=166, Evalue=1e-42,
Organism=Escherichia coli, GI1790767, Length=199, Percent_Identity=27.6381909547739, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1790768, Length=146, Percent_Identity=30.1369863013699, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 36108; Mature: 35977

Theoretical pI: Translated: 11.74; Mature: 11.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTGGDPAATARGGRGDSAGGGNGGRAGAGPGDGDRGSGGDGWAGAVEAFVRHLVAERDR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
SPETVRAYRADLAGLRAHAAAAGRTDLLDLDLAVLRGWLAGMRSAGAAPATIARRASLAR
CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
VFSAFAARRGFLPDDVGARLATTRAPRRIPQVLTAAQADRLLETRPRGDRAQDPRDVALN
HHHHHHHHCCCCCCHHCCHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEC
LRDDLVLEILYGSAVRVSELCRLDIGDVDHERRLLRVHGKGGRQRSVPFSVPAAGALDVW
CHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHCCEEEEECCCCCCCCCCCCCCCCCHHHHH
LTRGRPYLATRVEAALLLGARGGRLDPRSVRRLVQARGAAAGVPTGLTPHGLRHGAATHM
HCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
VEGGADLRSVQELLGHASLSTTQIYTHVTPERLRAAFDQAHPRA
HCCCHHHHHHHHHHHCCCCCHHEEEECCCHHHHHHHHHHCCCCC
>Mature Secondary Structure 
GTGGDPAATARGGRGDSAGGGNGGRAGAGPGDGDRGSGGDGWAGAVEAFVRHLVAERDR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
SPETVRAYRADLAGLRAHAAAAGRTDLLDLDLAVLRGWLAGMRSAGAAPATIARRASLAR
CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
VFSAFAARRGFLPDDVGARLATTRAPRRIPQVLTAAQADRLLETRPRGDRAQDPRDVALN
HHHHHHHHCCCCCCHHCCHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEC
LRDDLVLEILYGSAVRVSELCRLDIGDVDHERRLLRVHGKGGRQRSVPFSVPAAGALDVW
CHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHCCEEEEECCCCCCCCCCCCCCCCCHHHHH
LTRGRPYLATRVEAALLLGARGGRLDPRSVRRLVQARGAAAGVPTGLTPHGLRHGAATHM
HCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
VEGGADLRSVQELLGHASLSTTQIYTHVTPERLRAAFDQAHPRA
HCCCHHHHHHHHHHHCCCCCHHEEEECCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA