| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158312935
Identifier: 158312935
GI number: 158312935
Start: 1287532
End: 1288650
Strand: Direct
Name: 158312935
Synonym: Franean1_1081
Alternate gene names: NA
Gene position: 1287532-1288650 (Clockwise)
Preceding gene: 158312934
Following gene: 158312936
Centisome position: 14.33
GC content: 76.68
Gene sequence:
>1119_bases ATGACGTGGTCTGCCACCGAGCGGGGCGCGGGCCCGGAGCCGATCCGGGACGTGCCGGGGGAGGGTGTCTCATCGCTGGG CAGCGACGGGACCGCCGAGCGGGCGGGCATCCCCTGGCCGCCCGGGACGGCCTCCGGGGTCGGGTCGCTGCCGGATCTCG ACCCGGTCGAGGCCGCGCGGTACGTCCTGGGGGAGGTGCCGGACCTGCCGTTCCTGCCGGAGCTGCCGGGCCGCGGGGTC GGCGCCGACATCATCGGCCGTTCGTGCGCGCTGCTGGTGGACCTGCCGGTCGACTTCCAGCCGTCCGGGTGGCGGCTGGT GCCGCGGCCCGGCCTGGACCTGCGCCGGGCCCGTGACCTGCTCGCCCGGGATCTGGACGCGTTCACCGAGGCGGCCGCCG ACTACACCGGGCCGCTCAAGGTGTCGGCCGCGGGCCCCTGGACGCTGGCCGGCGGGGTCGAGCTGCCGCGCGGGCACAAG GCGCTCGCCGATCAGGGCGCGGCCCGGGACCTGGCCGAGGCGCTCGCCGAGGGGCTGGTCGCCCACCTGGCCGACCTGGG GCGACGGATTCCGGGTGCCCGGCTGCTCGTCCAGCTCGACGAGCCGTCGCTGCCGGCTATGCTCGCCGGCCACATCCGCA CTCCCAGCGGGTTCTCCGTCCTGCCCGCCGTCGAGGAGGGGCCGGCGACCGAGCGGCTGGCCGGCGTGCTGTCCGCGGTG ACCGGGGTGGCGTCGGTCGCCGCGTCCGGCGTGCACTGCTGCGCGCCGGACGTGCCGCTCGACCTGCTGCGGCGGGCCGG CGCGCGGTTCGTCGGCCTCGACGCGACCCTGCTCACCCGGGCGCAGGACGACGCGGTCGGCGAGGCGGTCGAGGCGGGCG TCGGCCTGATGTTCGGCCTGGTGCCGACGGACGTGGCCGGGAACCTGTCGGACCCCCGTCGTACGGTCGCGGTGGCGGTC GACCTGTGGCGTCGGCTGGGGTTCGCTCCGGAACTACTCGGGGAGGTGGTGGCCGTGACACCGACGTGTGGTCTGGCCAA TGCCAGGGTGGGTGACGCGCGCGCCGCGCTGCGGCACTGCCGTGAGGCGGCGCGGGTCCTGGTGGAATCTCCACAGTGA
Upstream 100 bases:
>100_bases GGGTCGTTCCGACGGGTGATTCTGGCGGGTGATTCTGGTGGGTGTTGTTCGCCGGCCGTGGCCTGGGGTCGCGGCCGGAA TCTAAGGAGTCGATGTGGTG
Downstream 100 bases:
>100_bases GCGTGGACGAGCGCGGCCTGGCTGCCGACGAGCGCGGCCTGGCCGCTGACGAGGTTGGTCTGGCCGCCGACGAGCGTGGC CGGGCCGCCGAGCTGGCCCG
Product: methionine synthase vitamin-B12 independent
Products: NA
Alternate protein names: Methionine Synthase; Vitamin-B12 Independent Methionine Synthase; Cobalamin-Independent Methionine Synthase
Number of amino acids: Translated: 372; Mature: 371
Protein sequence:
>372_residues MTWSATERGAGPEPIRDVPGEGVSSLGSDGTAERAGIPWPPGTASGVGSLPDLDPVEAARYVLGEVPDLPFLPELPGRGV GADIIGRSCALLVDLPVDFQPSGWRLVPRPGLDLRRARDLLARDLDAFTEAAADYTGPLKVSAAGPWTLAGGVELPRGHK ALADQGAARDLAEALAEGLVAHLADLGRRIPGARLLVQLDEPSLPAMLAGHIRTPSGFSVLPAVEEGPATERLAGVLSAV TGVASVAASGVHCCAPDVPLDLLRRAGARFVGLDATLLTRAQDDAVGEAVEAGVGLMFGLVPTDVAGNLSDPRRTVAVAV DLWRRLGFAPELLGEVVAVTPTCGLANARVGDARAALRHCREAARVLVESPQ
Sequences:
>Translated_372_residues MTWSATERGAGPEPIRDVPGEGVSSLGSDGTAERAGIPWPPGTASGVGSLPDLDPVEAARYVLGEVPDLPFLPELPGRGV GADIIGRSCALLVDLPVDFQPSGWRLVPRPGLDLRRARDLLARDLDAFTEAAADYTGPLKVSAAGPWTLAGGVELPRGHK ALADQGAARDLAEALAEGLVAHLADLGRRIPGARLLVQLDEPSLPAMLAGHIRTPSGFSVLPAVEEGPATERLAGVLSAV TGVASVAASGVHCCAPDVPLDLLRRAGARFVGLDATLLTRAQDDAVGEAVEAGVGLMFGLVPTDVAGNLSDPRRTVAVAV DLWRRLGFAPELLGEVVAVTPTCGLANARVGDARAALRHCREAARVLVESPQ >Mature_371_residues TWSATERGAGPEPIRDVPGEGVSSLGSDGTAERAGIPWPPGTASGVGSLPDLDPVEAARYVLGEVPDLPFLPELPGRGVG ADIIGRSCALLVDLPVDFQPSGWRLVPRPGLDLRRARDLLARDLDAFTEAAADYTGPLKVSAAGPWTLAGGVELPRGHKA LADQGAARDLAEALAEGLVAHLADLGRRIPGARLLVQLDEPSLPAMLAGHIRTPSGFSVLPAVEEGPATERLAGVLSAVT GVASVAASGVHCCAPDVPLDLLRRAGARFVGLDATLLTRAQDDAVGEAVEAGVGLMFGLVPTDVAGNLSDPRRTVAVAVD LWRRLGFAPELLGEVVAVTPTCGLANARVGDARAALRHCREAARVLVESPQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38330; Mature: 38199
Theoretical pI: Translated: 4.68; Mature: 4.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTWSATERGAGPEPIRDVPGEGVSSLGSDGTAERAGIPWPPGTASGVGSLPDLDPVEAAR CCCCCCCCCCCCCCHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH YVLGEVPDLPFLPELPGRGVGADIIGRSCALLVDLPVDFQPSGWRLVPRPGLDLRRARDL HHHHCCCCCCCCCCCCCCCCCHHHHCCCEEEEEECCCCCCCCCCEECCCCCCHHHHHHHH LARDLDAFTEAAADYTGPLKVSAAGPWTLAGGVELPRGHKALADQGAARDLAEALAEGLV HHHHHHHHHHHHHCCCCCEEEECCCCEEEECCCCCCCCCHHHHHCCHHHHHHHHHHHHHH AHLADLGRRIPGARLLVQLDEPSLPAMLAGHIRTPSGFSVLPAVEEGPATERLAGVLSAV HHHHHHHHHCCCCEEEEEECCCCCCHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHH TGVASVAASGVHCCAPDVPLDLLRRAGARFVGLDATLLTRAQDDAVGEAVEAGVGLMFGL HHHHHHHHCCCEECCCCCCHHHHHHCCCCEEECCHHHHHHCHHHHHHHHHHHHHHHHHHC VPTDVAGNLSDPRRTVAVAVDLWRRLGFAPELLGEVVAVTPTCGLANARVGDARAALRHC CCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHEEECCCCCCCCCCCCHHHHHHHHH REAARVLVESPQ HHHHHHHHCCCC >Mature Secondary Structure TWSATERGAGPEPIRDVPGEGVSSLGSDGTAERAGIPWPPGTASGVGSLPDLDPVEAAR CCCCCCCCCCCCCHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH YVLGEVPDLPFLPELPGRGVGADIIGRSCALLVDLPVDFQPSGWRLVPRPGLDLRRARDL HHHHCCCCCCCCCCCCCCCCCHHHHCCCEEEEEECCCCCCCCCCEECCCCCCHHHHHHHH LARDLDAFTEAAADYTGPLKVSAAGPWTLAGGVELPRGHKALADQGAARDLAEALAEGLV HHHHHHHHHHHHHCCCCCEEEECCCCEEEECCCCCCCCCHHHHHCCHHHHHHHHHHHHHH AHLADLGRRIPGARLLVQLDEPSLPAMLAGHIRTPSGFSVLPAVEEGPATERLAGVLSAV HHHHHHHHHCCCCEEEEEECCCCCCHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHH TGVASVAASGVHCCAPDVPLDLLRRAGARFVGLDATLLTRAQDDAVGEAVEAGVGLMFGL HHHHHHHHCCCEECCCCCCHHHHHHCCCCEEECCHHHHHHCHHHHHHHHHHHHHHHHHHC VPTDVAGNLSDPRRTVAVAVDLWRRLGFAPELLGEVVAVTPTCGLANARVGDARAALRHC CCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHEEECCCCCCCCCCCCHHHHHHHHH REAARVLVESPQ HHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA