Click here to switch to the map view.

The map label for this gene is atpD [H]

Identifier: 158312878

GI number: 158312878

Start: 1204613

End: 1206052

Strand: Direct

Name: atpD [H]

Synonym: Franean1_1024

Alternate gene names: 158312878

Gene position: 1204613-1206052 (Clockwise)

Preceding gene: 158312877

Following gene: 158312879

Centisome position: 13.41

GC content: 68.06

Gene sequence:

>1440_bases
ATGACCGTCACCACCAGCTCGCCGACCACGGCGGAGGGCCGGACTCCGGGGATCGGCCGAGTCGCCCGAGTCATCGGACC
GGTCGTCGACGTCGAGTTCGCCCCCGACGAGCTTCCCGAGATCTACACCGCGCTGCACGTCGACCGCACGATCGACGGCG
AGACCGCGGTCCTGACCCTTGAGGTCGCGCAGCACATCGGCGACAACACCATCCGCGCCATCTCCATGCAGCAGACCGAC
GGCCTCGTGCGCGGGGCTCCGGTCCGCGACACCGGCGCGCCGATCTCCGTCCCGGTCGGGAACGCCACCAAGGGCCACGT
GTTCAACGTGCTCGGCAACCCGCTCGACGTGGACAAGGTCGACGCCGAGACCTACTGGCCGATCCACCGCTCGGCGCCGG
CCTTCGACCAGCTCGAGTCGAAGACGGAGATGTTCACCACCGGCATCAAGGTCATCGACCTGCTCGCCCCGTACGTGCGA
GGCGGCAAGATCGGTCTGATGGGCGGCGCCGGCGTCGGCAAGACCGTCATCATCCAGGAGATGATCCGCCGGGTCGCCAA
GGAGTTCGGTGGCGTGTCGGTGTTCGCCGGCGTCGGCGAGCGCACCCGCGAGGGCAACGACCTGTTCCTGGAGATGACCG
AGGCCGGCGTCATCGAGGACACCGCGCTCGTCTTCGGCCAGATGGACGAGCCGCCCGGCACCCGGCTCCGGGTCGCCCTC
GGCGCGCTCACCATGGCCGAGTACTTCCGGGATGTGCAGAAGCAGGACGTGCTCCTGTTCATCGACAACATCTTCCGGTT
CACCCAGGCCGGCTCCGAGGTGTCGACGCTGCTCGGCCGGATGCCCAGCGCCGTCGGCTACCAGCCGACGCTGGCTGACG
AGATGGGCGCCCTGCAGGAGCGGATCACCTCGACCCGCGGTCACTCGATCACCTCGCTGCAGGCGATCTACGTCCCCGCG
GACGACCTGACCGACCCGGCCCCGGCGACGACGTTCACCCACCTCGACGCCAACACGGTGCTCGACCGGGCGATCTCCGA
CCTCGGCATCTACCCGGCCGTGAGCCCGCTGGACTCGAACTCCCGGATCCTTGACGCCCGGTACATCGGGCAGGAGCACT
ACGACACCGCCCGCGAGGTGCAGCGGATCCTGCAGCGCTACAAGGACCTGCAGGACATCATCGCCATCCTCGGCATCGAC
GAGCTCTCCGAAGAGGACAAGATCCTCGTCAACCGGGCCCGCCGGATCCAGCGGTTCCTGTCCCAGCCGTTCTTCGTCGC
CGAGCAGTTCACTGGCATCCCCGGCAAGTTCGTCCCGCTCGACGAGACGATCGACTCGTTCCGCCGGCTCACCCAGGGTG
ACTACGACCACCTGCCCGAGCAGGCGTTCTTCATGTGCGGCGGGATCGAGGACGCCGAGAAGAACGCGGAGAACCTGTAA

Upstream 100 bases:

>100_bases
GGGCTCACAGCCGGCATCGACTCCGCTGCCGGCGTCGACACCGACGAACGTCAAGCCGAAGCCCGCGGCGGCGGGCAACG
ACAGTGAAACCGAGGACGCC

Downstream 100 bases:

>100_bases
TGCCGATGCGGGTGGCGATCGTCTCGCCCGAGCAGGAGGTGTGGTCCGGCGACGCCGACATGGTCGTCGCCCGGACCGTC
GACGGCGACATCGGTGTCCT

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 479; Mature: 478

Protein sequence:

>479_residues
MTVTTSSPTTAEGRTPGIGRVARVIGPVVDVEFAPDELPEIYTALHVDRTIDGETAVLTLEVAQHIGDNTIRAISMQQTD
GLVRGAPVRDTGAPISVPVGNATKGHVFNVLGNPLDVDKVDAETYWPIHRSAPAFDQLESKTEMFTTGIKVIDLLAPYVR
GGKIGLMGGAGVGKTVIIQEMIRRVAKEFGGVSVFAGVGERTREGNDLFLEMTEAGVIEDTALVFGQMDEPPGTRLRVAL
GALTMAEYFRDVQKQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPTLADEMGALQERITSTRGHSITSLQAIYVPA
DDLTDPAPATTFTHLDANTVLDRAISDLGIYPAVSPLDSNSRILDARYIGQEHYDTAREVQRILQRYKDLQDIIAILGID
ELSEEDKILVNRARRIQRFLSQPFFVAEQFTGIPGKFVPLDETIDSFRRLTQGDYDHLPEQAFFMCGGIEDAEKNAENL

Sequences:

>Translated_479_residues
MTVTTSSPTTAEGRTPGIGRVARVIGPVVDVEFAPDELPEIYTALHVDRTIDGETAVLTLEVAQHIGDNTIRAISMQQTD
GLVRGAPVRDTGAPISVPVGNATKGHVFNVLGNPLDVDKVDAETYWPIHRSAPAFDQLESKTEMFTTGIKVIDLLAPYVR
GGKIGLMGGAGVGKTVIIQEMIRRVAKEFGGVSVFAGVGERTREGNDLFLEMTEAGVIEDTALVFGQMDEPPGTRLRVAL
GALTMAEYFRDVQKQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPTLADEMGALQERITSTRGHSITSLQAIYVPA
DDLTDPAPATTFTHLDANTVLDRAISDLGIYPAVSPLDSNSRILDARYIGQEHYDTAREVQRILQRYKDLQDIIAILGID
ELSEEDKILVNRARRIQRFLSQPFFVAEQFTGIPGKFVPLDETIDSFRRLTQGDYDHLPEQAFFMCGGIEDAEKNAENL
>Mature_478_residues
TVTTSSPTTAEGRTPGIGRVARVIGPVVDVEFAPDELPEIYTALHVDRTIDGETAVLTLEVAQHIGDNTIRAISMQQTDG
LVRGAPVRDTGAPISVPVGNATKGHVFNVLGNPLDVDKVDAETYWPIHRSAPAFDQLESKTEMFTTGIKVIDLLAPYVRG
GKIGLMGGAGVGKTVIIQEMIRRVAKEFGGVSVFAGVGERTREGNDLFLEMTEAGVIEDTALVFGQMDEPPGTRLRVALG
ALTMAEYFRDVQKQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPTLADEMGALQERITSTRGHSITSLQAIYVPAD
DLTDPAPATTFTHLDANTVLDRAISDLGIYPAVSPLDSNSRILDARYIGQEHYDTAREVQRILQRYKDLQDIIAILGIDE
LSEEDKILVNRARRIQRFLSQPFFVAEQFTGIPGKFVPLDETIDSFRRLTQGDYDHLPEQAFFMCGGIEDAEKNAENL

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=482, Percent_Identity=64.3153526970954, Blast_Score=600, Evalue=1e-171,
Organism=Homo sapiens, GI19913424, Length=419, Percent_Identity=26.2529832935561, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI19913426, Length=352, Percent_Identity=25.5681818181818, Blast_Score=99, Evalue=7e-21,
Organism=Homo sapiens, GI19913428, Length=357, Percent_Identity=25.2100840336134, Blast_Score=99, Evalue=1e-20,
Organism=Homo sapiens, GI50345984, Length=386, Percent_Identity=26.1658031088083, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI4757810, Length=386, Percent_Identity=26.1658031088083, Blast_Score=79, Evalue=7e-15,
Organism=Escherichia coli, GI1790170, Length=462, Percent_Identity=62.987012987013, Blast_Score=591, Evalue=1e-170,
Organism=Escherichia coli, GI1788251, Length=391, Percent_Identity=29.156010230179, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1790172, Length=319, Percent_Identity=25.3918495297806, Blast_Score=92, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI25144756, Length=468, Percent_Identity=64.1025641025641, Blast_Score=590, Evalue=1e-169,
Organism=Caenorhabditis elegans, GI17565854, Length=356, Percent_Identity=27.247191011236, Blast_Score=120, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17570191, Length=350, Percent_Identity=25.4285714285714, Blast_Score=101, Evalue=8e-22,
Organism=Caenorhabditis elegans, GI17510931, Length=351, Percent_Identity=24.5014245014245, Blast_Score=99, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI71988080, Length=386, Percent_Identity=26.4248704663212, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI71988063, Length=386, Percent_Identity=26.4248704663212, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI71988074, Length=402, Percent_Identity=24.8756218905473, Blast_Score=71, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6322581, Length=468, Percent_Identity=65.1709401709402, Blast_Score=603, Evalue=1e-173,
Organism=Saccharomyces cerevisiae, GI6319603, Length=377, Percent_Identity=26.790450928382, Blast_Score=107, Evalue=4e-24,
Organism=Saccharomyces cerevisiae, GI6319370, Length=383, Percent_Identity=25.065274151436, Blast_Score=79, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6320016, Length=280, Percent_Identity=23.9285714285714, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24638766, Length=468, Percent_Identity=65.3846153846154, Blast_Score=595, Evalue=1e-170,
Organism=Drosophila melanogaster, GI28574560, Length=468, Percent_Identity=62.6068376068376, Blast_Score=571, Evalue=1e-163,
Organism=Drosophila melanogaster, GI20129479, Length=365, Percent_Identity=28.4931506849315, Blast_Score=129, Evalue=5e-30,
Organism=Drosophila melanogaster, GI24583992, Length=322, Percent_Identity=27.639751552795, Blast_Score=119, Evalue=6e-27,
Organism=Drosophila melanogaster, GI24583988, Length=441, Percent_Identity=26.0770975056689, Blast_Score=118, Evalue=1e-26,
Organism=Drosophila melanogaster, GI24583986, Length=441, Percent_Identity=26.0770975056689, Blast_Score=118, Evalue=1e-26,
Organism=Drosophila melanogaster, GI24583984, Length=441, Percent_Identity=26.0770975056689, Blast_Score=118, Evalue=1e-26,
Organism=Drosophila melanogaster, GI281361666, Length=358, Percent_Identity=25.6983240223464, Blast_Score=99, Evalue=5e-21,
Organism=Drosophila melanogaster, GI24646341, Length=358, Percent_Identity=25.6983240223464, Blast_Score=99, Evalue=5e-21,
Organism=Drosophila melanogaster, GI17136796, Length=358, Percent_Identity=25.6983240223464, Blast_Score=99, Evalue=5e-21,
Organism=Drosophila melanogaster, GI24638768, Length=94, Percent_Identity=53.1914893617021, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24658560, Length=384, Percent_Identity=24.7395833333333, Blast_Score=82, Evalue=1e-15,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 52382; Mature: 52251

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVTTSSPTTAEGRTPGIGRVARVIGPVVDVEFAPDELPEIYTALHVDRTIDGETAVLTL
CEECCCCCCCCCCCCCCHHHHHHHHHHHHEEECCCHHHHHHHHHHHHCCCCCCCEEEEEH
EVAQHIGDNTIRAISMQQTDGLVRGAPVRDTGAPISVPVGNATKGHVFNVLGNPLDVDKV
HHHHHCCCCCEEEEEEHHCCCCCCCCCCCCCCCEEEEECCCCCCCCEEHCCCCCCCCCCC
DAETYWPIHRSAPAFDQLESKTEMFTTGIKVIDLLAPYVRGGKIGLMGGAGVGKTVIIQE
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHH
MIRRVAKEFGGVSVFAGVGERTREGNDLFLEMTEAGVIEDTALVFGQMDEPPGTRLRVAL
HHHHHHHHHCCEEEEECCCCCCCCCCCEEEEECCCCCEEHHHHHCCCCCCCCCCEEEHHH
GALTMAEYFRDVQKQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPTLADEMGALQE
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHCCCCCCHHHHHHHHHH
RITSTRGHSITSLQAIYVPADDLTDPAPATTFTHLDANTVLDRAISDLGIYPAVSPLDSN
HHHHCCCCCEEEEEEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCC
SRILDARYIGQEHYDTAREVQRILQRYKDLQDIIAILGIDELSEEDKILVNRARRIQRFL
CCEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHH
SQPFFVAEQFTGIPGKFVPLDETIDSFRRLTQGDYDHLPEQAFFMCGGIEDAEKNAENL
CCCCEEHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHCCCHHHHHEECCCCHHHHCCCCC
>Mature Secondary Structure 
TVTTSSPTTAEGRTPGIGRVARVIGPVVDVEFAPDELPEIYTALHVDRTIDGETAVLTL
EECCCCCCCCCCCCCCHHHHHHHHHHHHEEECCCHHHHHHHHHHHHCCCCCCCEEEEEH
EVAQHIGDNTIRAISMQQTDGLVRGAPVRDTGAPISVPVGNATKGHVFNVLGNPLDVDKV
HHHHHCCCCCEEEEEEHHCCCCCCCCCCCCCCCEEEEECCCCCCCCEEHCCCCCCCCCCC
DAETYWPIHRSAPAFDQLESKTEMFTTGIKVIDLLAPYVRGGKIGLMGGAGVGKTVIIQE
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHH
MIRRVAKEFGGVSVFAGVGERTREGNDLFLEMTEAGVIEDTALVFGQMDEPPGTRLRVAL
HHHHHHHHHCCEEEEECCCCCCCCCCCEEEEECCCCCEEHHHHHCCCCCCCCCCEEEHHH
GALTMAEYFRDVQKQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPTLADEMGALQE
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHCCCCCCHHHHHHHHHH
RITSTRGHSITSLQAIYVPADDLTDPAPATTFTHLDANTVLDRAISDLGIYPAVSPLDSN
HHHHCCCCCEEEEEEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCC
SRILDARYIGQEHYDTAREVQRILQRYKDLQDIIAILGIDELSEEDKILVNRARRIQRFL
CCEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHH
SQPFFVAEQFTGIPGKFVPLDETIDSFRRLTQGDYDHLPEQAFFMCGGIEDAEKNAENL
CCCCEEHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHCCCHHHHHEECCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA