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The map label for this gene is ybdL [H]

Identifier: 158312764

GI number: 158312764

Start: 1060102

End: 1061367

Strand: Direct

Name: ybdL [H]

Synonym: Franean1_0910

Alternate gene names: 158312764

Gene position: 1060102-1061367 (Clockwise)

Preceding gene: 158312763

Following gene: 158312766

Centisome position: 11.8

GC content: 72.2

Gene sequence:

>1266_bases
GTGTCCGTGGCCGAGGAGACGACAGACCAGCCGCCGTGGGTGGGCCGCGAGCGGGACGTGACCGCCGGGGCGTCCGGCCC
GGCGATGCGGATCTCGGGGAGGGCGCAGACCTTCACCGAGTCCGTGATCCGGGACATGACCAGGCTCGCGCTGCGGCACG
GGGCGGTGAACCTGGCGCAGGGCTTCCCGGACTTCGCCTGCCCGACCGAGCTGAAGGAAGCCGCGAAGGCGGCCATCGAC
GCCGACGTCAACCAGTACGCGATCACCTGGGGAGCGGCCGACTTCCGGGCCGCGATCGCCGCGAAGATCGGCCGCACCTA
TCCCGGCTGGACCGTCGACCCGGACACCGAGATCTGCGTGACCTGCGGCTCCACCGAGGCGATGATCGCCGCGATGCTGG
CGCTGGTCGACCCCGGCGAGGAGGTCGTGTTCTTCGAGCCGTTCTACGAGAACTACGGCCCCGACTCGATCCTGTCCGGC
GCGGTCCCCCGCCTGGTGCGCCTGCACGGCCCGGACTGGTCTATCGACCCGGCGGAGCTGCGCGCGGCCTGCTCGGACCG
GACCCGCGCGATCGTCGTCAACACCCCGCACAACCCGACCGGCAAGGTGTTCAGCGCCGACGAGCTCGCCCTCATCGCGG
AGCTCTGCCAGCGGCACGACATCCTGGTGTTCACCGACGAGATCTACGAACACATCCACTATCTGGGGCCGGGCGGGCAC
ATCCCGCCGGCGACCGTCCCGGGCCTGGAGGACCGCACGGTCACCGTGAACGCGCTGTCGAAGACGTACGCGGTCACCGG
CTGGAGGGTCGGGTGGACCGTCGCCCCCGCTCCCTACACCGAGGCGATCCGCAAGGTGCACGACTTCCTCACCGTCGGCG
CCGCCGCGCCGCTGCAGGCCGCCGGCGTCGCCGCGATGGGACTGCCGCCCGAGTACTACGCCGGGCTCGCGCAGGAGTAC
CGGGTGCGCCGTGACCTCCTGTGCGGCGCGCTGGAGAACACCGGGTTCGCCCTCCGTCCACCGGACGGCGCCTACTATGT
GATGTGCGACACCACCGACCTGGACCCGGCCGGCGACGACGTCGCCTTCGCGCGGCGGCTGGTGAGCGAGCTCGGGGTCG
CGGCCGTCCCGGGATCGTCCTTCTACGCCGATCCGGCCGACGGCCGGCGCATCGTCCGGTTCGGTTTCCCGAAGCGGCTG
GAGACGCTGCGGGCGGCGACGGACCGCCTGCGACTGCTCGAGCGCACCCGGGCGGCCCACCCGTAA

Upstream 100 bases:

>100_bases
CCGCCCGTCGGCCAGGCCAGTTGGCCGGCGCAGGCAGCCGCGGCCTCAGCGCTGCGCGGCGTGGCCGAGGGCGCCGCGCG
CTGAGGCCGCGCGCCATCAT

Downstream 100 bases:

>100_bases
CACGGATCAAGCCCGTGCCACTCCGGCCCCTCGCAGGTGCGGCACTGGTCCGCGTTAGTCCCGGTGGGCTGGCACCGGCA
GCGGGTAGCCGGCGGACGCG

Product: class I and II aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 420

Protein sequence:

>421_residues
MSVAEETTDQPPWVGRERDVTAGASGPAMRISGRAQTFTESVIRDMTRLALRHGAVNLAQGFPDFACPTELKEAAKAAID
ADVNQYAITWGAADFRAAIAAKIGRTYPGWTVDPDTEICVTCGSTEAMIAAMLALVDPGEEVVFFEPFYENYGPDSILSG
AVPRLVRLHGPDWSIDPAELRAACSDRTRAIVVNTPHNPTGKVFSADELALIAELCQRHDILVFTDEIYEHIHYLGPGGH
IPPATVPGLEDRTVTVNALSKTYAVTGWRVGWTVAPAPYTEAIRKVHDFLTVGAAAPLQAAGVAAMGLPPEYYAGLAQEY
RVRRDLLCGALENTGFALRPPDGAYYVMCDTTDLDPAGDDVAFARRLVSELGVAAVPGSSFYADPADGRRIVRFGFPKRL
ETLRAATDRLRLLERTRAAHP

Sequences:

>Translated_421_residues
MSVAEETTDQPPWVGRERDVTAGASGPAMRISGRAQTFTESVIRDMTRLALRHGAVNLAQGFPDFACPTELKEAAKAAID
ADVNQYAITWGAADFRAAIAAKIGRTYPGWTVDPDTEICVTCGSTEAMIAAMLALVDPGEEVVFFEPFYENYGPDSILSG
AVPRLVRLHGPDWSIDPAELRAACSDRTRAIVVNTPHNPTGKVFSADELALIAELCQRHDILVFTDEIYEHIHYLGPGGH
IPPATVPGLEDRTVTVNALSKTYAVTGWRVGWTVAPAPYTEAIRKVHDFLTVGAAAPLQAAGVAAMGLPPEYYAGLAQEY
RVRRDLLCGALENTGFALRPPDGAYYVMCDTTDLDPAGDDVAFARRLVSELGVAAVPGSSFYADPADGRRIVRFGFPKRL
ETLRAATDRLRLLERTRAAHP
>Mature_420_residues
SVAEETTDQPPWVGRERDVTAGASGPAMRISGRAQTFTESVIRDMTRLALRHGAVNLAQGFPDFACPTELKEAAKAAIDA
DVNQYAITWGAADFRAAIAAKIGRTYPGWTVDPDTEICVTCGSTEAMIAAMLALVDPGEEVVFFEPFYENYGPDSILSGA
VPRLVRLHGPDWSIDPAELRAACSDRTRAIVVNTPHNPTGKVFSADELALIAELCQRHDILVFTDEIYEHIHYLGPGGHI
PPATVPGLEDRTVTVNALSKTYAVTGWRVGWTVAPAPYTEAIRKVHDFLTVGAAAPLQAAGVAAMGLPPEYYAGLAQEYR
VRRDLLCGALENTGFALRPPDGAYYVMCDTTDLDPAGDDVAFARRLVSELGVAAVPGSSFYADPADGRRIVRFGFPKRLE
TLRAATDRLRLLERTRAAHP

Specific function: Shows aminotransferase activity with methionine and histidine as substrates, and to a lesser extent also with phenylalanine [H]

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI56713254, Length=407, Percent_Identity=33.6609336609337, Blast_Score=243, Evalue=2e-64,
Organism=Homo sapiens, GI56713256, Length=407, Percent_Identity=33.6609336609337, Blast_Score=243, Evalue=2e-64,
Organism=Homo sapiens, GI95147551, Length=399, Percent_Identity=35.0877192982456, Blast_Score=236, Evalue=2e-62,
Organism=Homo sapiens, GI169881279, Length=399, Percent_Identity=35.0877192982456, Blast_Score=236, Evalue=2e-62,
Organism=Homo sapiens, GI169881281, Length=399, Percent_Identity=30.8270676691729, Blast_Score=190, Evalue=2e-48,
Organism=Homo sapiens, GI4507369, Length=327, Percent_Identity=26.9113149847095, Blast_Score=90, Evalue=4e-18,
Organism=Escherichia coli, GI1786816, Length=373, Percent_Identity=40.7506702412869, Blast_Score=280, Evalue=1e-76,
Organism=Escherichia coli, GI1788722, Length=393, Percent_Identity=27.2264631043257, Blast_Score=135, Evalue=7e-33,
Organism=Escherichia coli, GI1788627, Length=198, Percent_Identity=34.3434343434343, Blast_Score=104, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI71994472, Length=433, Percent_Identity=31.6397228637413, Blast_Score=206, Evalue=2e-53,
Organism=Caenorhabditis elegans, GI71994476, Length=426, Percent_Identity=31.4553990610329, Blast_Score=205, Evalue=3e-53,
Organism=Caenorhabditis elegans, GI17567369, Length=413, Percent_Identity=30.0242130750605, Blast_Score=189, Evalue=2e-48,
Organism=Caenorhabditis elegans, GI17567663, Length=338, Percent_Identity=25.4437869822485, Blast_Score=95, Evalue=6e-20,
Organism=Saccharomyces cerevisiae, GI6322401, Length=390, Percent_Identity=29.4871794871795, Blast_Score=197, Evalue=3e-51,
Organism=Drosophila melanogaster, GI28573069, Length=408, Percent_Identity=33.578431372549, Blast_Score=233, Evalue=2e-61,
Organism=Drosophila melanogaster, GI24646114, Length=408, Percent_Identity=33.578431372549, Blast_Score=233, Evalue=2e-61,
Organism=Drosophila melanogaster, GI28573067, Length=408, Percent_Identity=33.578431372549, Blast_Score=233, Evalue=2e-61,
Organism=Drosophila melanogaster, GI28573065, Length=408, Percent_Identity=33.578431372549, Blast_Score=233, Evalue=2e-61,
Organism=Drosophila melanogaster, GI18859735, Length=311, Percent_Identity=27.3311897106109, Blast_Score=101, Evalue=8e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: 2.6.1.- [C]

Molecular weight: Translated: 45511; Mature: 45380

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVAEETTDQPPWVGRERDVTAGASGPAMRISGRAQTFTESVIRDMTRLALRHGAVNLAQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHC
GFPDFACPTELKEAAKAAIDADVNQYAITWGAADFRAAIAAKIGRTYPGWTVDPDTEICV
CCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCEECCCCCEEE
TCGSTEAMIAAMLALVDPGEEVVFFEPFYENYGPDSILSGAVPRLVRLHGPDWSIDPAEL
EECCHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCHHHHHHHHHHHEEECCCCCCCCHHHH
RAACSDRTRAIVVNTPHNPTGKVFSADELALIAELCQRHDILVFTDEIYEHIHYLGPGGH
HHHHCCCCCEEEEECCCCCCCCEECCHHHHHHHHHHHHCCEEEEEHHHHHHHHHCCCCCC
IPPATVPGLEDRTVTVNALSKTYAVTGWRVGWTVAPAPYTEAIRKVHDFLTVGAAAPLQA
CCCCCCCCCCCCEEEEEECCCEEEEECEEECEEECCCCHHHHHHHHHHHHHHCCCCCHHH
AGVAAMGLPPEYYAGLAQEYRVRRDLLCGALENTGFALRPPDGAYYVMCDTTDLDPAGDD
CCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEECCCCCCCCCH
VAFARRLVSELGVAAVPGSSFYADPADGRRIVRFGFPKRLETLRAATDRLRLLERTRAAH
HHHHHHHHHHCCEEECCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCC
P
C
>Mature Secondary Structure 
SVAEETTDQPPWVGRERDVTAGASGPAMRISGRAQTFTESVIRDMTRLALRHGAVNLAQ
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHC
GFPDFACPTELKEAAKAAIDADVNQYAITWGAADFRAAIAAKIGRTYPGWTVDPDTEICV
CCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCEECCCCCEEE
TCGSTEAMIAAMLALVDPGEEVVFFEPFYENYGPDSILSGAVPRLVRLHGPDWSIDPAEL
EECCHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCHHHHHHHHHHHEEECCCCCCCCHHHH
RAACSDRTRAIVVNTPHNPTGKVFSADELALIAELCQRHDILVFTDEIYEHIHYLGPGGH
HHHHCCCCCEEEEECCCCCCCCEECCHHHHHHHHHHHHCCEEEEEHHHHHHHHHCCCCCC
IPPATVPGLEDRTVTVNALSKTYAVTGWRVGWTVAPAPYTEAIRKVHDFLTVGAAAPLQA
CCCCCCCCCCCCEEEEEECCCEEEEECEEECEEECCCCHHHHHHHHHHHHHHCCCCCHHH
AGVAAMGLPPEYYAGLAQEYRVRRDLLCGALENTGFALRPPDGAYYVMCDTTDLDPAGDD
CCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEECCCCCCCCCH
VAFARRLVSELGVAAVPGSSFYADPADGRRIVRFGFPKRLETLRAATDRLRLLERTRAAH
HHHHHHHHHHCCEEECCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCC
P
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Pyridoxal Phosphate. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]