| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is icfG [H]
Identifier: 158312398
GI number: 158312398
Start: 626542
End: 627879
Strand: Direct
Name: icfG [H]
Synonym: Franean1_0541
Alternate gene names: 158312398
Gene position: 626542-627879 (Clockwise)
Preceding gene: 158312397
Following gene: 158312399
Centisome position: 6.98
GC content: 71.82
Gene sequence:
>1338_bases GTGGATAATGCGCCGGCGCCGGAAGGGACCGGGCCGGCACGTGACGCGGGCCCCGACCAGGCTGCCTCGGTATTGCTCCG CGCCGAGCCGGAGGAGCCCTTCGACCGGCTGACCCGCCTGGCGGCAGTCATGCTCGGCGCCCCGTTCGCCTTCGTCATGG CGATGGACGACGGGCGTTCCTACTGGAAGTCCCGTGCGGGTACGGCGGCGGGCGACCTCACCGGTCGGCAGATCGCAGCG GCAGACAGCCTCTGCCGCCTGGCGGTCGGCACGGGTCTGCCGCTGGTCGTGCCCGATGCCGGCCGCGACGATCGCGTCCG GGGCGATTCGCTCGTCCGGTCGGCCGGTATCAGGGCATGGGCCAGCTTCCCGCTCCGCGATCCGAGCGGCCGCACGCTCG GTGCCTTCGGAGCGGCCGACGTCCGCCCCCGGCTCTGGACGGCCCGTGACCTCGAGCTGCTGGAGACCCTCGCCCAGGCC GTGTCGGGCGAGATCGCGCTGCGTCACGTCGCGGCGGCCGCGACCGCGCTGGCCCGGACTCTCCAGCAGAGCCTCCTCCC CCCGGAGGTTCCGGAGATCCCCGGCCTGGAGGTCTCGGCCCGTTACCGCCCGGCGGGCGAAGGCGCCGAGGTCCTGGGCG ATTTCTTCGACGTGTTCCAGACCGGCCGTACCAGTTTCGGCGTGGTTCTGGGCGATGTCGCCGGCAAGGGGGTCGAGGCG GCCAAGGTGACCGCGCTGGCGCACTACACCATCCGGGCGGCGGCGAGTCGCACCCGTGATCCGGCCGCCATTCTGAACCA GCTCAACCGGGCGCTGCTCACCCAACATCCCGACAGCGAACGGTTCCTCACCGTCGCATACATGGCCGTGGACCGGTCCC GGCGAAATCGGACCCTGGCCCTCTGTTCGGCCGGGCACACTCCCGTTCTGCTCCGTGGGCGCGACGGCACGGTGACCCCC ATCGGCTCCCACGGCCTGGTGCTCGGCGTCTTCGAGGACCCGGAGCTCACCACCAGCCGGCCGAGATTCGGTCCCGGTGA CACCATCCTGCTCTACACGGACGGCGTCACCGAGGCCCGCCGTGGGAACGACCAGTACGGCGATGATCGGCTGCGGGCGC TGCTCGCGGCCACCGATCCGGCCGCCGGCCGCCTCACCGCGACGATCGAGGCGGCGGTGCTTGATTTTGCCGACGGGCCG CCCCAGGACGATATTGCCATCCTCGCAATCCACTTCCCGGATATCTCGTCCGTGGCGATGAAAACGGTCCGTTCGAGGCT GCGGTCCCGGCGGCGACCACGGCGGCCGTTCACGCGCCGTGGCACGCCGACCGTGTGA
Upstream 100 bases:
>100_bases GGTGCCTGATCCGGCCGACGGACGGTTTGCGGCAGCTGGTGTAGGCCACGAGCCACCGGCTTTTTGCCGCGGAGCAGAAT CGCGCGGTTAGGCTTGCGAG
Downstream 100 bases:
>100_bases AGGGCCCCGGCCAGGGCGGCGGACGACGGGCCGCCGAAAGTGTCCAGACCCGACAGCGAGTGGTGCCGGCCGGTCCCCCG GTTGCTTTCAATATTCCCGA
Product: GAF sensor-containing protein serine phosphatase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 445; Mature: 445
Protein sequence:
>445_residues MDNAPAPEGTGPARDAGPDQAASVLLRAEPEEPFDRLTRLAAVMLGAPFAFVMAMDDGRSYWKSRAGTAAGDLTGRQIAA ADSLCRLAVGTGLPLVVPDAGRDDRVRGDSLVRSAGIRAWASFPLRDPSGRTLGAFGAADVRPRLWTARDLELLETLAQA VSGEIALRHVAAAATALARTLQQSLLPPEVPEIPGLEVSARYRPAGEGAEVLGDFFDVFQTGRTSFGVVLGDVAGKGVEA AKVTALAHYTIRAAASRTRDPAAILNQLNRALLTQHPDSERFLTVAYMAVDRSRRNRTLALCSAGHTPVLLRGRDGTVTP IGSHGLVLGVFEDPELTTSRPRFGPGDTILLYTDGVTEARRGNDQYGDDRLRALLAATDPAAGRLTATIEAAVLDFADGP PQDDIAILAIHFPDISSVAMKTVRSRLRSRRRPRRPFTRRGTPTV
Sequences:
>Translated_445_residues MDNAPAPEGTGPARDAGPDQAASVLLRAEPEEPFDRLTRLAAVMLGAPFAFVMAMDDGRSYWKSRAGTAAGDLTGRQIAA ADSLCRLAVGTGLPLVVPDAGRDDRVRGDSLVRSAGIRAWASFPLRDPSGRTLGAFGAADVRPRLWTARDLELLETLAQA VSGEIALRHVAAAATALARTLQQSLLPPEVPEIPGLEVSARYRPAGEGAEVLGDFFDVFQTGRTSFGVVLGDVAGKGVEA AKVTALAHYTIRAAASRTRDPAAILNQLNRALLTQHPDSERFLTVAYMAVDRSRRNRTLALCSAGHTPVLLRGRDGTVTP IGSHGLVLGVFEDPELTTSRPRFGPGDTILLYTDGVTEARRGNDQYGDDRLRALLAATDPAAGRLTATIEAAVLDFADGP PQDDIAILAIHFPDISSVAMKTVRSRLRSRRRPRRPFTRRGTPTV >Mature_445_residues MDNAPAPEGTGPARDAGPDQAASVLLRAEPEEPFDRLTRLAAVMLGAPFAFVMAMDDGRSYWKSRAGTAAGDLTGRQIAA ADSLCRLAVGTGLPLVVPDAGRDDRVRGDSLVRSAGIRAWASFPLRDPSGRTLGAFGAADVRPRLWTARDLELLETLAQA VSGEIALRHVAAAATALARTLQQSLLPPEVPEIPGLEVSARYRPAGEGAEVLGDFFDVFQTGRTSFGVVLGDVAGKGVEA AKVTALAHYTIRAAASRTRDPAAILNQLNRALLTQHPDSERFLTVAYMAVDRSRRNRTLALCSAGHTPVLLRGRDGTVTP IGSHGLVLGVFEDPELTTSRPRFGPGDTILLYTDGVTEARRGNDQYGDDRLRALLAATDPAAGRLTATIEAAVLDFADGP PQDDIAILAIHFPDISSVAMKTVRSRLRSRRRPRRPFTRRGTPTV
Specific function: Involved in cross-regulation of inorganic carbon and glucose metabolisms [H]
COG id: COG2208
COG function: function code TK; Serine phosphatase RsbU, regulator of sigma subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PP2C-like domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003660 - InterPro: IPR001932 - InterPro: IPR010822 [H]
Pfam domain/function: PF00672 HAMP; PF07228 SpoIIE [H]
EC number: NA
Molecular weight: Translated: 47430; Mature: 47430
Theoretical pI: Translated: 9.10; Mature: 9.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDNAPAPEGTGPARDAGPDQAASVLLRAEPEEPFDRLTRLAAVMLGAPFAFVMAMDDGRS CCCCCCCCCCCCCCCCCCCHHHHEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCHH YWKSRAGTAAGDLTGRQIAAADSLCRLAVGTGLPLVVPDAGRDDRVRGDSLVRSAGIRAW HHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHCCHHH ASFPLRDPSGRTLGAFGAADVRPRLWTARDLELLETLAQAVSGEIALRHVAAAATALART HCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH LQQSLLPPEVPEIPGLEVSARYRPAGEGAEVLGDFFDVFQTGRTSFGVVLGDVAGKGVEA HHHHCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCH AKVTALAHYTIRAAASRTRDPAAILNQLNRALLTQHPDSERFLTVAYMAVDRSRRNRTLA HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHCCCCCEEE LCSAGHTPVLLRGRDGTVTPIGSHGLVLGVFEDPELTTSRPRFGPGDTILLYTDGVTEAR EEECCCCEEEEECCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCHHH RGNDQYGDDRLRALLAATDPAAGRLTATIEAAVLDFADGPPQDDIAILAIHFPDISSVAM CCCCCCCHHHHHHHHHHCCCCCCCEEEEEHHHHHCCCCCCCCCCEEEEEEECCCHHHHHH KTVRSRLRSRRRPRRPFTRRGTPTV HHHHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure MDNAPAPEGTGPARDAGPDQAASVLLRAEPEEPFDRLTRLAAVMLGAPFAFVMAMDDGRS CCCCCCCCCCCCCCCCCCCHHHHEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCHH YWKSRAGTAAGDLTGRQIAAADSLCRLAVGTGLPLVVPDAGRDDRVRGDSLVRSAGIRAW HHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHCCHHH ASFPLRDPSGRTLGAFGAADVRPRLWTARDLELLETLAQAVSGEIALRHVAAAATALART HCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH LQQSLLPPEVPEIPGLEVSARYRPAGEGAEVLGDFFDVFQTGRTSFGVVLGDVAGKGVEA HHHHCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCH AKVTALAHYTIRAAASRTRDPAAILNQLNRALLTQHPDSERFLTVAYMAVDRSRRNRTLA HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHCCCCCEEE LCSAGHTPVLLRGRDGTVTPIGSHGLVLGVFEDPELTTSRPRFGPGDTILLYTDGVTEAR EEECCCCEEEEECCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCHHH RGNDQYGDDRLRALLAATDPAAGRLTATIEAAVLDFADGPPQDDIAILAIHFPDISSVAM CCCCCCCHHHHHHHHHHCCCCCCCEEEEEHHHHHCCCCCCCCCCEEEEEEECCCHHHHHH KTVRSRLRSRRRPRRPFTRRGTPTV HHHHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8075401; 8905231 [H]