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The map label for this gene is ycdM [C]

Identifier: 158312347

GI number: 158312347

Start: 570804

End: 571682

Strand: Direct

Name: ycdM [C]

Synonym: Franean1_0487

Alternate gene names: 158312347

Gene position: 570804-571682 (Clockwise)

Preceding gene: 158312344

Following gene: 158312352

Centisome position: 6.35

GC content: 67.24

Gene sequence:

>879_bases
ATGTCAGACTCTATGGTACGAGGCATGGATATAGGGATCTTCACCGGTATCACCGACGAGCAGATCAGGCCGGCCCTGCT
CGCACGGGCAGTCGAGGAGCGGGGGTTCGAGTCACTGTTCGTCGCCGAGCACACCCACATCCCGGTCCGCCGGGAGACGC
CGTATCCCGAAGGTGGCGACCTTCCCCGCGACTACTATCGCACCCTCGATCCCTTCATAAGCCTGACGACCGCCGCGGCC
GTGACGACCCGATTGCGACTCGGCACCGCGATAGCGCTGGTGGTACAGCGGGATCCGATCCTGTTGGCGAAGGAGACCGC
CACCCTCGACCTGGTCAGCGACGGCCGATTCGAGCTGGGCATCGGCGCCGGCTGGCTGCGCGAGGAGATGCGCAACCACG
GCACCGACCCGGAAACCCGGGTGCCGCTGATGCGGGAACGGCTGGCCGCGACGAAAGCGCTCTGGACGTCGGAGCAGGCG
GAGTTCCACGGTCGCTTCGTCGACTTCGATCCGATCTTCCAATGGCCGAAACCGGTGCAGCGGCCGCATCCACCGGTGTG
GATCGGAGGCTGGGGTCCGACCACATTCCACCGGATCGTCACCGACGGCGACGGCTGGCTCGCTCCTCCCATACCGGTCG
ACGCCTTGGCCCGCGGGGTCGAGGAACTAGCCGAGGTGGCGAACCGGGCCGGGACGGCCGCACCACCGGTGACCGCGATC
CTGCTGAACCCTGACGAGGCAGCGACCGAGAAAGCTGCGCTCCTCGGTGTCCGTCGCATCCTGTTCGGGCTGTTTCCCGT
CACCGATGCCGACACGACACTGCGCACTCTGGACCACCTGGGCACCCTGGCCCAGCGCACGGTCCTGGCTCGGGGCTAA

Upstream 100 bases:

>100_bases
TAGTGGCGTAGCGACCGCACGCTCGCTCCGGTGCGTGCCGACAGCTCACCGATCCGCATCCGGCACCCGCCTCCAGCCTT
GGCGCTTGACCCTGACACTG

Downstream 100 bases:

>100_bases
CTCGTCCGGGCGGTCCCCGGCAGCGCGCTCGTTCTTTCCGAAACCCGCAGGTCAAGCACCATCCCGATCAATAGCGCCAA
CGGGTCGTTCGTCAGCAGCT

Product: luciferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MSDSMVRGMDIGIFTGITDEQIRPALLARAVEERGFESLFVAEHTHIPVRRETPYPEGGDLPRDYYRTLDPFISLTTAAA
VTTRLRLGTAIALVVQRDPILLAKETATLDLVSDGRFELGIGAGWLREEMRNHGTDPETRVPLMRERLAATKALWTSEQA
EFHGRFVDFDPIFQWPKPVQRPHPPVWIGGWGPTTFHRIVTDGDGWLAPPIPVDALARGVEELAEVANRAGTAAPPVTAI
LLNPDEAATEKAALLGVRRILFGLFPVTDADTTLRTLDHLGTLAQRTVLARG

Sequences:

>Translated_292_residues
MSDSMVRGMDIGIFTGITDEQIRPALLARAVEERGFESLFVAEHTHIPVRRETPYPEGGDLPRDYYRTLDPFISLTTAAA
VTTRLRLGTAIALVVQRDPILLAKETATLDLVSDGRFELGIGAGWLREEMRNHGTDPETRVPLMRERLAATKALWTSEQA
EFHGRFVDFDPIFQWPKPVQRPHPPVWIGGWGPTTFHRIVTDGDGWLAPPIPVDALARGVEELAEVANRAGTAAPPVTAI
LLNPDEAATEKAALLGVRRILFGLFPVTDADTTLRTLDHLGTLAQRTVLARG
>Mature_291_residues
SDSMVRGMDIGIFTGITDEQIRPALLARAVEERGFESLFVAEHTHIPVRRETPYPEGGDLPRDYYRTLDPFISLTTAAAV
TTRLRLGTAIALVVQRDPILLAKETATLDLVSDGRFELGIGAGWLREEMRNHGTDPETRVPLMRERLAATKALWTSEQAE
FHGRFVDFDPIFQWPKPVQRPHPPVWIGGWGPTTFHRIVTDGDGWLAPPIPVDALARGVEELAEVANRAGTAAPPVTAIL
LNPDEAATEKAALLGVRRILFGLFPVTDADTTLRTLDHLGTLAQRTVLARG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv2161c and Rv3079c [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019921
- InterPro:   IPR011251
- InterPro:   IPR016048 [H]

Pfam domain/function: PF00296 Bac_luciferase [H]

EC number: NA

Molecular weight: Translated: 32149; Mature: 32018

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDSMVRGMDIGIFTGITDEQIRPALLARAVEERGFESLFVAEHTHIPVRRETPYPEGGD
CCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCC
LPRDYYRTLDPFISLTTAAAVTTRLRLGTAIALVVQRDPILLAKETATLDLVSDGRFELG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEECCCEEEEECCCCEEEE
IGAGWLREEMRNHGTDPETRVPLMRERLAATKALWTSEQAEFHGRFVDFDPIFQWPKPVQ
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCC
RPHPPVWIGGWGPTTFHRIVTDGDGWLAPPIPVDALARGVEELAEVANRAGTAAPPVTAI
CCCCCEEECCCCCHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE
LLNPDEAATEKAALLGVRRILFGLFPVTDADTTLRTLDHLGTLAQRTVLARG
EECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SDSMVRGMDIGIFTGITDEQIRPALLARAVEERGFESLFVAEHTHIPVRRETPYPEGGD
CCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCC
LPRDYYRTLDPFISLTTAAAVTTRLRLGTAIALVVQRDPILLAKETATLDLVSDGRFELG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEECCCEEEEECCCCEEEE
IGAGWLREEMRNHGTDPETRVPLMRERLAATKALWTSEQAEFHGRFVDFDPIFQWPKPVQ
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCC
RPHPPVWIGGWGPTTFHRIVTDGDGWLAPPIPVDALARGVEELAEVANRAGTAAPPVTAI
CCCCCEEECCCCCHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE
LLNPDEAATEKAALLGVRRILFGLFPVTDADTTLRTLDHLGTLAQRTVLARG
EECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]