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The map label for this gene is yliC [C]

Identifier: 158312290

GI number: 158312290

Start: 502903

End: 503844

Strand: Direct

Name: yliC [C]

Synonym: Franean1_0427

Alternate gene names: 158312290

Gene position: 502903-503844 (Clockwise)

Preceding gene: 158312289

Following gene: 158312291

Centisome position: 5.6

GC content: 68.37

Gene sequence:

>942_bases
ATGATGCTCACGCTGCTGAAGAACCTCGCGCGCTCGCTGGCCGTGCTGCTGGTGGTCACCTTCGCCACGTTCACGCTGAT
GTTCGGTAACGGGGACGGCATCGCCCGGGCGGTGCTGGGCCTGAACGCCCGGCCGGAGGACGTCCAGCGTGAGGTCGTCA
CTCTCGGTCTCGACCAGCCGCTGCTGGTGCAGTACTGGCATTGGCTGCGCGACGCGGTCACCGGCGACCTCGGCGAGTCG
TTCTACACCGGACAGTCGGTGACCGAGGCGCTCTCGTCGAGGGTGCCGGTCACCCTCGCCCTGGTGATCATCACCCTGCT
CCTGGCGGTCGTGCTCAGCGTGCTGCTCGGCGTCACGGCCGCCGTCAAGGGCGGCTGGGTCGACCGTCTCCTGCAGTTCG
TGACCGTGCTGGGCACCGCGATCCCGTCGTTCATCATCGCCATCGTCCTGGTCTTCACCTTCGCCATCGCCTGGCGGGTG
CTGCCGGCCACCGGCTACGTCACGCCCGAGATCAGCGTCTCGGGCTGGGCGAAGTCGGTGACCCTGCCGGTGCTGGCGCT
GCTGGTCGGTGCGGTGGCCAGCGCGGCCGCGCAGTTCCGGACCGCGGTGCTGGACACGCTGGGCCGTGACTACATCCGTA
CGTTACGGGCCCGCGGGATCAGCGAACGGCACGTGATCTTCCGGCACGTGCTGCGCAACTCCGCCGGACCCGGTCTGACA
GTGCTCAGCCTGACCACGCTGGGCCTGCTGGGCGGGGCGGTCTTCGTCGAGCAGGTGTTCGCGCTGCCCGGCATGGGCCA
GCTGGCCAACCAGTCGGCCCAGGTCAACGACGTGCCCATGGTGATGGGCACCGTGCTCGTGACGATCGTGATCGTCCTGG
TCGTGAACTTCCTCGGTGACCTGGCCACCACTGTGCTGAACCCGAAGGCGAGGATCCGATGA

Upstream 100 bases:

>100_bases
GGTTCTACGCGCACAGCCCGGACGTGAAGATCGATCACGTCTCGGACCACGAGGCGCTGACCCCGAAGCTGCGCGACTTC
AAGTAGCCGGGAGACCTGCG

Downstream 100 bases:

>100_bases
CCGCCGAACGGGTAGTGGGCGACACCCGGCGCCGGGTGTTCCGGCAACTCCTGCGCAACCCGCAGGGCGCCGTGTGCCTG
GCCTTTCTCGCCCCGGTCGT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MMLTLLKNLARSLAVLLVVTFATFTLMFGNGDGIARAVLGLNARPEDVQREVVTLGLDQPLLVQYWHWLRDAVTGDLGES
FYTGQSVTEALSSRVPVTLALVIITLLLAVVLSVLLGVTAAVKGGWVDRLLQFVTVLGTAIPSFIIAIVLVFTFAIAWRV
LPATGYVTPEISVSGWAKSVTLPVLALLVGAVASAAAQFRTAVLDTLGRDYIRTLRARGISERHVIFRHVLRNSAGPGLT
VLSLTTLGLLGGAVFVEQVFALPGMGQLANQSAQVNDVPMVMGTVLVTIVIVLVVNFLGDLATTVLNPKARIR

Sequences:

>Translated_313_residues
MMLTLLKNLARSLAVLLVVTFATFTLMFGNGDGIARAVLGLNARPEDVQREVVTLGLDQPLLVQYWHWLRDAVTGDLGES
FYTGQSVTEALSSRVPVTLALVIITLLLAVVLSVLLGVTAAVKGGWVDRLLQFVTVLGTAIPSFIIAIVLVFTFAIAWRV
LPATGYVTPEISVSGWAKSVTLPVLALLVGAVASAAAQFRTAVLDTLGRDYIRTLRARGISERHVIFRHVLRNSAGPGLT
VLSLTTLGLLGGAVFVEQVFALPGMGQLANQSAQVNDVPMVMGTVLVTIVIVLVVNFLGDLATTVLNPKARIR
>Mature_313_residues
MMLTLLKNLARSLAVLLVVTFATFTLMFGNGDGIARAVLGLNARPEDVQREVVTLGLDQPLLVQYWHWLRDAVTGDLGES
FYTGQSVTEALSSRVPVTLALVIITLLLAVVLSVLLGVTAAVKGGWVDRLLQFVTVLGTAIPSFIIAIVLVFTFAIAWRV
LPATGYVTPEISVSGWAKSVTLPVLALLVGAVASAAAQFRTAVLDTLGRDYIRTLRARGISERHVIFRHVLRNSAGPGLT
VLSLTTLGLLGGAVFVEQVFALPGMGQLANQSAQVNDVPMVMGTVLVTIVIVLVVNFLGDLATTVLNPKARIR

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=315, Percent_Identity=32.6984126984127, Blast_Score=160, Evalue=7e-41,
Organism=Escherichia coli, GI1789888, Length=271, Percent_Identity=33.210332103321, Blast_Score=144, Evalue=5e-36,
Organism=Escherichia coli, GI1789965, Length=320, Percent_Identity=30.3125, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1787497, Length=270, Percent_Identity=32.2222222222222, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1788504, Length=297, Percent_Identity=28.956228956229, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1787761, Length=296, Percent_Identity=34.4594594594595, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1787550, Length=265, Percent_Identity=25.6603773584906, Blast_Score=97, Evalue=9e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33348; Mature: 33348

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMLTLLKNLARSLAVLLVVTFATFTLMFGNGDGIARAVLGLNARPEDVQREVVTLGLDQP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCH
LLVQYWHWLRDAVTGDLGESFYTGQSVTEALSSRVPVTLALVIITLLLAVVLSVLLGVTA
HHHHHHHHHHHHHHHHHCHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AVKGGWVDRLLQFVTVLGTAIPSFIIAIVLVFTFAIAWRVLPATGYVTPEISVSGWAKSV
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
TLPVLALLVGAVASAAAQFRTAVLDTLGRDYIRTLRARGISERHVIFRHVLRNSAGPGLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHH
VLSLTTLGLLGGAVFVEQVFALPGMGQLANQSAQVNDVPMVMGTVLVTIVIVLVVNFLGD
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LATTVLNPKARIR
HHHHHCCCHHCCC
>Mature Secondary Structure
MMLTLLKNLARSLAVLLVVTFATFTLMFGNGDGIARAVLGLNARPEDVQREVVTLGLDQP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCH
LLVQYWHWLRDAVTGDLGESFYTGQSVTEALSSRVPVTLALVIITLLLAVVLSVLLGVTA
HHHHHHHHHHHHHHHHHCHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AVKGGWVDRLLQFVTVLGTAIPSFIIAIVLVFTFAIAWRVLPATGYVTPEISVSGWAKSV
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
TLPVLALLVGAVASAAAQFRTAVLDTLGRDYIRTLRARGISERHVIFRHVLRNSAGPGLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHH
VLSLTTLGLLGGAVFVEQVFALPGMGQLANQSAQVNDVPMVMGTVLVTIVIVLVVNFLGD
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LATTVLNPKARIR
HHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11756688 [H]