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The map label for this gene is atpD1 [H]

Identifier: 157964051

GI number: 157964051

Start: 5153922

End: 5155298

Strand: Reverse

Name: atpD1 [H]

Synonym: Spea_4240

Alternate gene names: 157964051

Gene position: 5155298-5153922 (Counterclockwise)

Preceding gene: 157964052

Following gene: 157964050

Centisome position: 99.63

GC content: 46.48

Gene sequence:

>1377_bases
ATGAGCACAGGTACTGTTGTCCAAGTAATTGGCGCGGTTGTGGACGTAGAGTTTCCACATGATGCCGTACCTCAGGTATA
TGACGCTCTAGAGATCAAAAGTGAAGGCTTGGTGCTGGAAGTTCAGCAGCAACTTGGTGGTGGTGTAGTTCGTACCATCG
CTATGGGTTCTTCAGATGGTCTGCGTCGTGGCCTAGAGGTTGTAAACTCTGGTTCACCAATTACTGTTCCGGTTGGGTCT
GCGACCCTAGGCCGTATTATGAACGTATTGGGTGAGCCTGTTGATGAAGCGGGCCCTATCGGTGAAGAAGATCGCTATGT
GATCCACCGTGAAGCTCCTTCATACGAAGATCAGTCAAACACAACTGAACTTTTAGAGACTGGTATCAAGGTTATCGACC
TTGTATGTCCATTCGCTAAGGGTGGTAAAGTTGGTCTGTTTGGTGGTGCTGGTGTTGGTAAGACCGTCAACATGATGGAA
CTTATTAACAACATCGCTAAAGCACACTCTGGTTTATCAGTTTTCGCTGGTGTAGGTGAGCGTACTCGTGAGGGTAACGA
CTTCTACTACGAGATGGAAGATTCTGGCGTTCTAGATAAAGTGGCCATGGTATATGGTCAGATGAACGAGCCTCCAGGAA
ACCGTCTACGTGTGGCACTGACTGGTCTAACTATGGCTGAGAAGTTCCGTGACGAAGGTAAAGACGTTCTTTTCTTCGTA
GATAACATCTATCGTTACACCTTGGCAGGTACTGAAGTATCTGCACTGCTAGGCCGTATGCCATCAGCAGTAGGTTACCA
GCCAACATTGGCTGAAGAGATGGGTGTACTTCAGGAGCGTATTACATCGACTAAGACAGGGTCTATTACCTCTGTTCAAG
CCGTATACGTACCTGCGGATGACTTAACGGATCCATCACCAGCAACAACCTTCGCTCACTTAGATGCGACTGTTGTATTG
TCTCGTAACATTGCTTCGCTAGGTATTTACCCAGCGGTTGACCCATTGGATTCGACTTCACGTCAGCTAGATCCACAGGT
TGTTGGCCAAGAGCATTACGATGTTGCTAACGGTGTTCAAACCGTACTTCAGCGCTACAAAGAGCTGAAAGATATCATTG
CGATCCTAGGTATGGATGAATTATCTGATGAAGATAAGACAACTGTATTCCGTGCTCGTAAGATTGAAAAATATCTTTCA
CAGCCATTCTTCGTAGCAGAAGTATTCACCGGTTCTCCAGGTAAGTACGTTTCTCTTAAAGACACAATCCGTGGCTTCAA
GGGCATTCTAGAGGGTGAGTTCGATCACCTTCCAGAGCAGGCGTTCTACATGGTTGGTTCAATCGACGAAGCTGTTGAGA
AAGCTAACAAAAAATAA

Upstream 100 bases:

>100_bases
AAGCCCGTCAGGCTGCGATTACGCAAGAATTGTCGGAAATTGTTTCAGGTGCTGCCGCCGTTTAGGCTAGGTAACGAATA
CAAGTTTTAGAGGATTAATC

Downstream 100 bases:

>100_bases
CTAAGTCTCTGACTTAGTTTAAGGAGAACGGATGGCAGCCATGACAGTACAGCTTGATATGGTAAGCGCAGAGAATCATA
TCTTTTCTGGTCGAGTAGCT

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta 1; F-ATPase subunit beta 1 [H]

Number of amino acids: Translated: 458; Mature: 457

Protein sequence:

>458_residues
MSTGTVVQVIGAVVDVEFPHDAVPQVYDALEIKSEGLVLEVQQQLGGGVVRTIAMGSSDGLRRGLEVVNSGSPITVPVGS
ATLGRIMNVLGEPVDEAGPIGEEDRYVIHREAPSYEDQSNTTELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMME
LINNIAKAHSGLSVFAGVGERTREGNDFYYEMEDSGVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEKFRDEGKDVLFFV
DNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDATVVL
SRNIASLGIYPAVDPLDSTSRQLDPQVVGQEHYDVANGVQTVLQRYKELKDIIAILGMDELSDEDKTTVFRARKIEKYLS
QPFFVAEVFTGSPGKYVSLKDTIRGFKGILEGEFDHLPEQAFYMVGSIDEAVEKANKK

Sequences:

>Translated_458_residues
MSTGTVVQVIGAVVDVEFPHDAVPQVYDALEIKSEGLVLEVQQQLGGGVVRTIAMGSSDGLRRGLEVVNSGSPITVPVGS
ATLGRIMNVLGEPVDEAGPIGEEDRYVIHREAPSYEDQSNTTELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMME
LINNIAKAHSGLSVFAGVGERTREGNDFYYEMEDSGVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEKFRDEGKDVLFFV
DNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDATVVL
SRNIASLGIYPAVDPLDSTSRQLDPQVVGQEHYDVANGVQTVLQRYKELKDIIAILGMDELSDEDKTTVFRARKIEKYLS
QPFFVAEVFTGSPGKYVSLKDTIRGFKGILEGEFDHLPEQAFYMVGSIDEAVEKANKK
>Mature_457_residues
STGTVVQVIGAVVDVEFPHDAVPQVYDALEIKSEGLVLEVQQQLGGGVVRTIAMGSSDGLRRGLEVVNSGSPITVPVGSA
TLGRIMNVLGEPVDEAGPIGEEDRYVIHREAPSYEDQSNTTELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMEL
INNIAKAHSGLSVFAGVGERTREGNDFYYEMEDSGVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEKFRDEGKDVLFFVD
NIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLS
RNIASLGIYPAVDPLDSTSRQLDPQVVGQEHYDVANGVQTVLQRYKELKDIIAILGMDELSDEDKTTVFRARKIEKYLSQ
PFFVAEVFTGSPGKYVSLKDTIRGFKGILEGEFDHLPEQAFYMVGSIDEAVEKANKK

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=465, Percent_Identity=69.8924731182796, Blast_Score=647, Evalue=0.0,
Organism=Homo sapiens, GI19913426, Length=397, Percent_Identity=25.1889168765743, Blast_Score=107, Evalue=3e-23,
Organism=Homo sapiens, GI19913428, Length=404, Percent_Identity=25.7425742574257, Blast_Score=106, Evalue=5e-23,
Organism=Homo sapiens, GI19913424, Length=306, Percent_Identity=28.7581699346405, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI50345984, Length=331, Percent_Identity=24.1691842900302, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI4757810, Length=331, Percent_Identity=24.1691842900302, Blast_Score=100, Evalue=3e-21,
Organism=Escherichia coli, GI1790170, Length=459, Percent_Identity=86.4923747276688, Blast_Score=808, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=356, Percent_Identity=29.2134831460674, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1790172, Length=424, Percent_Identity=25, Blast_Score=125, Evalue=6e-30,
Organism=Caenorhabditis elegans, GI25144756, Length=465, Percent_Identity=67.741935483871, Blast_Score=632, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17510931, Length=349, Percent_Identity=26.3610315186246, Blast_Score=115, Evalue=7e-26,
Organism=Caenorhabditis elegans, GI17570191, Length=423, Percent_Identity=25.7683215130024, Blast_Score=112, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI71988080, Length=421, Percent_Identity=23.9904988123515, Blast_Score=108, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI71988063, Length=421, Percent_Identity=23.9904988123515, Blast_Score=108, Evalue=8e-24,
Organism=Caenorhabditis elegans, GI17565854, Length=322, Percent_Identity=27.9503105590062, Blast_Score=106, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI71988074, Length=292, Percent_Identity=23.6301369863014, Blast_Score=87, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6322581, Length=458, Percent_Identity=68.5589519650655, Blast_Score=635, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=386, Percent_Identity=25.3886010362694, Blast_Score=110, Evalue=4e-25,
Organism=Saccharomyces cerevisiae, GI6319370, Length=402, Percent_Identity=25.6218905472637, Blast_Score=109, Evalue=8e-25,
Organism=Saccharomyces cerevisiae, GI6320016, Length=233, Percent_Identity=27.4678111587983, Blast_Score=82, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24638766, Length=464, Percent_Identity=68.5344827586207, Blast_Score=633, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=464, Percent_Identity=63.1465517241379, Blast_Score=580, Evalue=1e-166,
Organism=Drosophila melanogaster, GI281361666, Length=425, Percent_Identity=26.1176470588235, Blast_Score=112, Evalue=6e-25,
Organism=Drosophila melanogaster, GI24646341, Length=425, Percent_Identity=26.1176470588235, Blast_Score=112, Evalue=6e-25,
Organism=Drosophila melanogaster, GI17136796, Length=425, Percent_Identity=26.1176470588235, Blast_Score=112, Evalue=6e-25,
Organism=Drosophila melanogaster, GI20129479, Length=327, Percent_Identity=28.7461773700306, Blast_Score=108, Evalue=9e-24,
Organism=Drosophila melanogaster, GI24583992, Length=305, Percent_Identity=27.5409836065574, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24658560, Length=331, Percent_Identity=24.1691842900302, Blast_Score=101, Evalue=8e-22,
Organism=Drosophila melanogaster, GI24583988, Length=334, Percent_Identity=25.748502994012, Blast_Score=101, Evalue=9e-22,
Organism=Drosophila melanogaster, GI24583986, Length=334, Percent_Identity=25.748502994012, Blast_Score=101, Evalue=9e-22,
Organism=Drosophila melanogaster, GI24583984, Length=334, Percent_Identity=25.748502994012, Blast_Score=101, Evalue=9e-22,
Organism=Drosophila melanogaster, GI24638768, Length=92, Percent_Identity=54.3478260869565, Blast_Score=92, Evalue=9e-19,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 49486; Mature: 49355

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTGTVVQVIGAVVDVEFPHDAVPQVYDALEIKSEGLVLEVQQQLGGGVVRTIAMGSSDG
CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEEHHHHCCCEEEEEECCCCHH
LRRGLEVVNSGSPITVPVGSATLGRIMNVLGEPVDEAGPIGEEDRYVIHREAPSYEDQSN
HHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCHHCCCCCCCCCEEEEECCCCCCCCCC
TTELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE
HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEECCCCC
RTREGNDFYYEMEDSGVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEKFRDEGKDVLFFV
CCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHHCCCEEEEEE
DNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPAD
EHHHHEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCC
DLTDPSPATTFAHLDATVVLSRNIASLGIYPAVDPLDSTSRQLDPQVVGQEHYDVANGVQ
CCCCCCCCCEEECCCEEEEEECCHHHCCCCCCCCCCCCHHHHCCHHHCCCCHHHHHHHHH
TVLQRYKELKDIIAILGMDELSDEDKTTVFRARKIEKYLSQPFFVAEVFTGSPGKYVSLK
HHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEHH
DTIRGFKGILEGEFDHLPEQAFYMVGSIDEAVEKANKK
HHHHHHHHHHCCHHHCCCHHHHHHHCCHHHHHHHHCCC
>Mature Secondary Structure 
STGTVVQVIGAVVDVEFPHDAVPQVYDALEIKSEGLVLEVQQQLGGGVVRTIAMGSSDG
CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEEHHHHCCCEEEEEECCCCHH
LRRGLEVVNSGSPITVPVGSATLGRIMNVLGEPVDEAGPIGEEDRYVIHREAPSYEDQSN
HHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCHHCCCCCCCCCEEEEECCCCCCCCCC
TTELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE
HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEECCCCC
RTREGNDFYYEMEDSGVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEKFRDEGKDVLFFV
CCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHHCCCEEEEEE
DNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPAD
EHHHHEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCC
DLTDPSPATTFAHLDATVVLSRNIASLGIYPAVDPLDSTSRQLDPQVVGQEHYDVANGVQ
CCCCCCCCCEEECCCEEEEEECCHHHCCCCCCCCCCCCHHHHCCHHHCCCCHHHHHHHHH
TVLQRYKELKDIIAILGMDELSDEDKTTVFRARKIEKYLSQPFFVAEVFTGSPGKYVSLK
HHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEHH
DTIRGFKGILEGEFDHLPEQAFYMVGSIDEAVEKANKK
HHHHHHHHHHCCHHHCCCHHHHHHHCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA