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The map label for this gene is dcyD [H]

Identifier: 157963975

GI number: 157963975

Start: 5055063

End: 5056082

Strand: Direct

Name: dcyD [H]

Synonym: Spea_4164

Alternate gene names: 157963975

Gene position: 5055063-5056082 (Clockwise)

Preceding gene: 157963974

Following gene: 157963976

Centisome position: 97.69

GC content: 46.67

Gene sequence:

>1020_bases
ATGCTTACTGATAAATACCCTAAAGCTCAATTAGCTCACACTCCAACCCCTTTCGAATTTATGGCCAATATGACCAAGAA
ATTCGATGGCCCTAAATTATGGATTAAACGTGACGATGCAACTGGCTTAGCCATGGGTGGTAACAAGGCTCGTCAATTAG
AGTTTTACGTTGGTAAGGCTCAAGCCGATGGTTGTGACACCCTACTCACCACAGGTGCGGTTCAGTCTAACCACGTTCGT
ATGACTGTTGCAGCAGCACGTAAGATGGGCTGGCATGTTGAAGTACAGCTAGAGCACCGTGTTGATGGCCGACTACCTGA
GTACGAAGATAGCGGTAACCCATTCCTAGATAAATTAATGGGCGCAAAAATTCACAACTATCCAGTAGGTGAAGATGAGA
ACGGTGCGGATCAGGTGATGTATGACAGAGCCGACGAGCTAGCGGAAGAGGGCTACAAGCCGTTCGTTATTCCACTAGGC
GCTGTAGGTAAAACACCTTGGGGCGCACTAGGTTATGTTGACTGTGTTGAAGAGTTATTGCTTCAAGCGCAAGCGACTGG
CATGAAGATCGATGCCATCGTATTACCAACAGGCTCAGCTAACACCCACGCAGGTGTTTTAGCTGGCTTAATCGCGCTAA
ACAGCGATATCCCAGTATATGGTTTCTGTGTTCGCCGCGATAAAGTAGCTCAGTTCGAGCGTGTATTAGTTAAGACTCGC
AAAGTACTGCAACTGCTTGGTGTTGATGAAAATAAAGCGACTCACGACTTAGTTAAGTGTGAAGATTGGGTGCTTGGCCC
TGGATATGGCCAATTGACGACTGAAGTTCATGAAGCAATCGAGATTTTAGGTCATGAAGAAGGGATATTATTAGACCCTA
CCTACACAGCTAAGAGCATGGCTGGCATGATCGGCATGATCCGCGACGGTCAATTCACTAAAGATCAGAACGTCGTCTTT
TTACACACAGGTGGTACACCAGCCCTATTCGGCTACCCAGAACTGATTGCCAATAAGTAA

Upstream 100 bases:

>100_bases
ACATCCTGCTCAATATATAAATACAAAATAAAACCAGACATTAAAAAGCTATTCTTATAAATATTGATAAAAGAATAAAT
TAATATAAAGGAATCAAAAC

Downstream 100 bases:

>100_bases
AAACTAAATAAAAAAACATGCCTGAGGGTCTTCTCAGGCATTTTGGCCAAATTTTCATTCCTCGTCGCCACTGTCCCTAC
AGCCATGACGAAGGAATAGG

Product: 1-aminocyclopropane-1-carboxylate deaminase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MLTDKYPKAQLAHTPTPFEFMANMTKKFDGPKLWIKRDDATGLAMGGNKARQLEFYVGKAQADGCDTLLTTGAVQSNHVR
MTVAAARKMGWHVEVQLEHRVDGRLPEYEDSGNPFLDKLMGAKIHNYPVGEDENGADQVMYDRADELAEEGYKPFVIPLG
AVGKTPWGALGYVDCVEELLLQAQATGMKIDAIVLPTGSANTHAGVLAGLIALNSDIPVYGFCVRRDKVAQFERVLVKTR
KVLQLLGVDENKATHDLVKCEDWVLGPGYGQLTTEVHEAIEILGHEEGILLDPTYTAKSMAGMIGMIRDGQFTKDQNVVF
LHTGGTPALFGYPELIANK

Sequences:

>Translated_339_residues
MLTDKYPKAQLAHTPTPFEFMANMTKKFDGPKLWIKRDDATGLAMGGNKARQLEFYVGKAQADGCDTLLTTGAVQSNHVR
MTVAAARKMGWHVEVQLEHRVDGRLPEYEDSGNPFLDKLMGAKIHNYPVGEDENGADQVMYDRADELAEEGYKPFVIPLG
AVGKTPWGALGYVDCVEELLLQAQATGMKIDAIVLPTGSANTHAGVLAGLIALNSDIPVYGFCVRRDKVAQFERVLVKTR
KVLQLLGVDENKATHDLVKCEDWVLGPGYGQLTTEVHEAIEILGHEEGILLDPTYTAKSMAGMIGMIRDGQFTKDQNVVF
LHTGGTPALFGYPELIANK
>Mature_339_residues
MLTDKYPKAQLAHTPTPFEFMANMTKKFDGPKLWIKRDDATGLAMGGNKARQLEFYVGKAQADGCDTLLTTGAVQSNHVR
MTVAAARKMGWHVEVQLEHRVDGRLPEYEDSGNPFLDKLMGAKIHNYPVGEDENGADQVMYDRADELAEEGYKPFVIPLG
AVGKTPWGALGYVDCVEELLLQAQATGMKIDAIVLPTGSANTHAGVLAGLIALNSDIPVYGFCVRRDKVAQFERVLVKTR
KVLQLLGVDENKATHDLVKCEDWVLGPGYGQLTTEVHEAIEILGHEEGILLDPTYTAKSMAGMIGMIRDGQFTKDQNVVF
LHTGGTPALFGYPELIANK

Specific function: Catalyzes the alpha,beta-elimination reaction of D- cysteine and of several D-cysteine derivatives. It could be a defense mechanism against D-cysteine [H]

COG id: COG2515

COG function: function code E; 1-aminocyclopropane-1-carboxylate deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ACC deaminase/D-cysteine desulfhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082000, Length=328, Percent_Identity=37.5, Blast_Score=213, Evalue=2e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005966
- InterPro:   IPR001926 [H]

Pfam domain/function: PF00291 PALP [H]

EC number: =4.4.1.15 [H]

Molecular weight: Translated: 37118; Mature: 37118

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTDKYPKAQLAHTPTPFEFMANMTKKFDGPKLWIKRDDATGLAMGGNKARQLEFYVGKA
CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCEEEECCCCCEEEEEEEECC
QADGCDTLLTTGAVQSNHVRMTVAAARKMGWHVEVQLEHRVDGRLPEYEDSGNPFLDKLM
CCCCCHHHHHCCCCCCCCEEEEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHH
GAKIHNYPVGEDENGADQVMYDRADELAEEGYKPFVIPLGAVGKTPWGALGYVDCVEELL
CCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHH
LQAQATGMKIDAIVLPTGSANTHAGVLAGLIALNSDIPVYGFCVRRDKVAQFERVLVKTR
HHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHH
KVLQLLGVDENKATHDLVKCEDWVLGPGYGQLTTEVHEAIEILGHEEGILLDPTYTAKSM
HHHHHHCCCCCCCHHHHHHCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCCCHHHH
AGMIGMIRDGQFTKDQNVVFLHTGGTPALFGYPELIANK
HHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCHHHHCCC
>Mature Secondary Structure
MLTDKYPKAQLAHTPTPFEFMANMTKKFDGPKLWIKRDDATGLAMGGNKARQLEFYVGKA
CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCEEEECCCCCEEEEEEEECC
QADGCDTLLTTGAVQSNHVRMTVAAARKMGWHVEVQLEHRVDGRLPEYEDSGNPFLDKLM
CCCCCHHHHHCCCCCCCCEEEEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHH
GAKIHNYPVGEDENGADQVMYDRADELAEEGYKPFVIPLGAVGKTPWGALGYVDCVEELL
CCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHH
LQAQATGMKIDAIVLPTGSANTHAGVLAGLIALNSDIPVYGFCVRRDKVAQFERVLVKTR
HHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHH
KVLQLLGVDENKATHDLVKCEDWVLGPGYGQLTTEVHEAIEILGHEEGILLDPTYTAKSM
HHHHHHCCCCCCCHHHHHHCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCCCHHHH
AGMIGMIRDGQFTKDQNVVFLHTGGTPALFGYPELIANK
HHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA