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The map label for this gene is fdhD [H]

Identifier: 157963954

GI number: 157963954

Start: 5033480

End: 5034322

Strand: Direct

Name: fdhD [H]

Synonym: Spea_4143

Alternate gene names: 157963954

Gene position: 5033480-5034322 (Clockwise)

Preceding gene: 157963932

Following gene: 157963955

Centisome position: 97.27

GC content: 44.48

Gene sequence:

>843_bases
ATGATGACCCATATGACTGCAAACAAAAGCAATCCAACGTTAATCAAAACCAGCACCGACGTCCCCCTTACGATTGCTGT
CACCGCAATAAATGAGAATGGCGAGAAAGTGGATAAGTTCATTGCTTGCGAACGCCCTCTCACCGTCTACCTTAACTGGC
AGCCTATTGTGACCTTGATGACACTGGGTGCTCGAGCAGAAGCGTTATCGTTGGGATACCTTAAAAACCAAGGTTTTATA
TCTGACATCAACAAGTTAGAGTCTGTGATTGTCGACTGGGATGTAAATTCAGCCGCTATTCTGACCAGTGAAAAAATCGA
AAATTTAGACGAAAAACTGTCTGAAAAAACCGTTACAACTGGCTGTGGTCAAGGTACGGTTTACGGTGACTTTATGACTG
GGCTCGACGATATCGATTTACCGACCCCGCAGCTAAAGCAAAGCATGATCTATAGCTTGCTAAAGAATATCAGCGCCTAC
AATGAAACCTATAAAAATGCCGGTGCAGTGCACGGCTGTGGCTTATGCCGTCAAGATCAAATTTTTGGTTTTGTTGAAGA
TGTGGGTCGTCACAATGCAGTCGATACTTTAGCAGGTGAAATGTGGCTTAACCAAGATAGCGGTAACGACAAGCTGTTTT
ACACTACAGGGCGCTTAACTTCTGAGATGGTTATTAAGGTCGCTAAAATGGGGATCCCAGTCGTACTGTCGCGCAGTGGT
GCCACCCAGATGGGACTAGAGCTTGCACAAAAGCTCGGAATAACCATGATAGCCCGTGCTAAAGGTCGCCACTTCTTAAT
TTATAACGGTGCTGAGAATATTGAATTTGATGCACTTTCTTAA

Upstream 100 bases:

>100_bases
ACCCACCCGCAATAAGTGTGATCGACCACTAACTTTAACACCCTATTCAATTAGGTATAGATATTGCTTAGTAGTCAGCG
TATTGATTCCCTTTTAACTG

Downstream 100 bases:

>100_bases
ATCAATCGACCTGAAAACAACCATAAATTGCGTGACAAGGATAAAAAATGACCGAGCCGACTGAGCTGATCTATATGAGT
GCCAAACAGGTATCCGAGTA

Product: formate dehydrogenase subunit FdhD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MMTHMTANKSNPTLIKTSTDVPLTIAVTAINENGEKVDKFIACERPLTVYLNWQPIVTLMTLGARAEALSLGYLKNQGFI
SDINKLESVIVDWDVNSAAILTSEKIENLDEKLSEKTVTTGCGQGTVYGDFMTGLDDIDLPTPQLKQSMIYSLLKNISAY
NETYKNAGAVHGCGLCRQDQIFGFVEDVGRHNAVDTLAGEMWLNQDSGNDKLFYTTGRLTSEMVIKVAKMGIPVVLSRSG
ATQMGLELAQKLGITMIARAKGRHFLIYNGAENIEFDALS

Sequences:

>Translated_280_residues
MMTHMTANKSNPTLIKTSTDVPLTIAVTAINENGEKVDKFIACERPLTVYLNWQPIVTLMTLGARAEALSLGYLKNQGFI
SDINKLESVIVDWDVNSAAILTSEKIENLDEKLSEKTVTTGCGQGTVYGDFMTGLDDIDLPTPQLKQSMIYSLLKNISAY
NETYKNAGAVHGCGLCRQDQIFGFVEDVGRHNAVDTLAGEMWLNQDSGNDKLFYTTGRLTSEMVIKVAKMGIPVVLSRSG
ATQMGLELAQKLGITMIARAKGRHFLIYNGAENIEFDALS
>Mature_280_residues
MMTHMTANKSNPTLIKTSTDVPLTIAVTAINENGEKVDKFIACERPLTVYLNWQPIVTLMTLGARAEALSLGYLKNQGFI
SDINKLESVIVDWDVNSAAILTSEKIENLDEKLSEKTVTTGCGQGTVYGDFMTGLDDIDLPTPQLKQSMIYSLLKNISAY
NETYKNAGAVHGCGLCRQDQIFGFVEDVGRHNAVDTLAGEMWLNQDSGNDKLFYTTGRLTSEMVIKVAKMGIPVVLSRSG
ATQMGLELAQKLGITMIARAKGRHFLIYNGAENIEFDALS

Specific function: Necessary for formate dehydrogenase activity [H]

COG id: COG1526

COG function: function code C; Uncharacterized protein required for formate dehydrogenase activity

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fdhD family [H]

Homologues:

Organism=Escherichia coli, GI1790329, Length=244, Percent_Identity=24.1803278688525, Blast_Score=67, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003786 [H]

Pfam domain/function: PF02634 FdhD-NarQ [H]

EC number: NA

Molecular weight: Translated: 30655; Mature: 30655

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTHMTANKSNPTLIKTSTDVPLTIAVTAINENGEKVDKFIACERPLTVYLNWQPIVTLM
CCCEECCCCCCCEEEEECCCCCEEEEEEEECCCCHHHHHHHCCCCCEEEEECCCHHHHHH
TLGARAEALSLGYLKNQGFISDINKLESVIVDWDVNSAAILTSEKIENLDEKLSEKTVTT
HHCCCHHHEEEEEECCCCHHHHHHHHHHEEEEECCCCEEEEEHHHHHHHHHHHHHHHEEC
GCGQGTVYGDFMTGLDDIDLPTPQLKQSMIYSLLKNISAYNETYKNAGAVHGCGLCRQDQ
CCCCCCEEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
IFGFVEDVGRHNAVDTLAGEMWLNQDSGNDKLFYTTGRLTSEMVIKVAKMGIPVVLSRSG
HHHHHHHHCCCCHHHHHHHHHEEECCCCCCEEEEEECCHHHHHHHHHHHCCCCEEEECCC
ATQMGLELAQKLGITMIARAKGRHFLIYNGAENIEFDALS
CHHHHHHHHHHCCEEEEEECCCCEEEEEECCCCCEEECCC
>Mature Secondary Structure
MMTHMTANKSNPTLIKTSTDVPLTIAVTAINENGEKVDKFIACERPLTVYLNWQPIVTLM
CCCEECCCCCCCEEEEECCCCCEEEEEEEECCCCHHHHHHHCCCCCEEEEECCCHHHHHH
TLGARAEALSLGYLKNQGFISDINKLESVIVDWDVNSAAILTSEKIENLDEKLSEKTVTT
HHCCCHHHEEEEEECCCCHHHHHHHHHHEEEEECCCCEEEEEHHHHHHHHHHHHHHHEEC
GCGQGTVYGDFMTGLDDIDLPTPQLKQSMIYSLLKNISAYNETYKNAGAVHGCGLCRQDQ
CCCCCCEEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
IFGFVEDVGRHNAVDTLAGEMWLNQDSGNDKLFYTTGRLTSEMVIKVAKMGIPVVLSRSG
HHHHHHHHCCCCHHHHHHHHHEEECCCCCCEEEEEECCHHHHHHHHHHHCCCCEEEECCC
ATQMGLELAQKLGITMIARAKGRHFLIYNGAENIEFDALS
CHHHHHHHHHHCCEEEEEECCCCEEEEEECCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA