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The map label for this gene is fdoI [C]

Identifier: 157963942

GI number: 157963942

Start: 5019053

End: 5020033

Strand: Reverse

Name: fdoI [C]

Synonym: Spea_4131

Alternate gene names: 157963942

Gene position: 5020033-5019053 (Counterclockwise)

Preceding gene: 157963943

Following gene: 157963941

Centisome position: 97.01

GC content: 46.48

Gene sequence:

>981_bases
ATGAACAAATGGTTCAAACACATAGGCGTGGCAATTGCACTTTTATTTAGTGTGTCTGTATTTGCCCAAGACGCCCCTAA
AGTGGGTGACACCAATGAAGTGAATGGTCAAATCTGGGCTCAGCTAAAAGCGGGCGAAGAAGGCTATACCACTTCAACAA
GTGAGTTCCACGGTCAAGCAATCAACACCTATGACCTACGTGTACTTGATTTGCGTAGTGATATTCTTGCGCCAGCAATG
ATGGCTGCCCTTTTCGGCATGATCATTATCTTTGTACTGTTTATCAAAGTGAACGGTATCTCTAAGCTGCACGGTGGTTT
TTCAGGCAAGCTGGTTTACCGTTGGTCTAAGTTTGATGTATCGATTCACTGGCTAGGGGCTATTCCTTGTCTGTTATTGA
TCCTGACCGGCTTAACCTTACTGGCTGGACGTTTCTTCTTCCAACCATACATAGGCGAAGGTCTGTGGGCTGGCCTAGTT
AATGGTGCGAAGCAGATCCACGATATCATGGCGATCCCGTTCATGATTGGCTGGGCGCTGATGACTGTGCTGTGGGCTAA
GAATCAGATGCCTAAGATGTATGACCTTAAGTGGATGATGGTGGTTGGTGGTTACATCAACTTCGGTCCATTCAAAGGTA
AGCACCCAGACGCGGGTTTTGCTAACGCCGGTGAGAAGTTATGGTTCTGGGCATTCGCAGTGTTCGGTCTAGTAGTTTCA
GCATCAGGTATGCTGTTGCTATTCCCGAACTTGTTCGAGCCTAGCCGTACACTAAGCTTAATCGCACTAGTGCTTCACTC
TGTTGGCGCTATCATCATTACTGCTTTCTCAATCGTGCATATCTTCATGGCAACGGTAATGTCAGAAGGTGGTATGGAGT
GTATGGTTTCTGGTTACTGTGATGAAACATGGGCAAGCCAGCACCATAACCTTTGGTTCGATGAGATCAAAGAGAACGGT
ACCCTTAAGTACAAAGACTAG

Upstream 100 bases:

>100_bases
TTCTAACAAAAATGTTTGGGGTTAAGCCTCAAATATTGCGTTAGTCCATAATCGCTGCAAGCTGCCTCATTGAGGTTGCT
TGCAGCAATCAGGAGGTGAT

Downstream 100 bases:

>100_bases
TACTCGTTTGAATATTGTCTAAATAATGCCTCGACTATGTCGGGGCATTTTTTTAGCTAAAAATCGCTGAGTACAGCAAA
ATCATATCCTGATTGGTATA

Product: formate dehydrogenase subunit gamma

Products: CO2; NADH

Alternate protein names: Formate Dehydrogenase Cytochrome; Formate Dehydrogenase Subunit Gamma; Formate Dehydrogenase Subunit C; Formate Dehydrogenase Cytochrome B Subunit; Formate Dehydrogenase C Subunit; Formate Dehydrogenase; Formate Dehydrogenase-N; Cytochrome B Subunit Of Formate Dehydrogenase; Formate Dehydrogenase Subunit C FdnI; Formate Dehydrogenase Cytochromesubunit B; Cytochrome; Formate Dehydrogenase Cytochrome C Subunit Gamma Subunit; Formate Dehydrogenase N Gamma Subunit

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MNKWFKHIGVAIALLFSVSVFAQDAPKVGDTNEVNGQIWAQLKAGEEGYTTSTSEFHGQAINTYDLRVLDLRSDILAPAM
MAALFGMIIIFVLFIKVNGISKLHGGFSGKLVYRWSKFDVSIHWLGAIPCLLLILTGLTLLAGRFFFQPYIGEGLWAGLV
NGAKQIHDIMAIPFMIGWALMTVLWAKNQMPKMYDLKWMMVVGGYINFGPFKGKHPDAGFANAGEKLWFWAFAVFGLVVS
ASGMLLLFPNLFEPSRTLSLIALVLHSVGAIIITAFSIVHIFMATVMSEGGMECMVSGYCDETWASQHHNLWFDEIKENG
TLKYKD

Sequences:

>Translated_326_residues
MNKWFKHIGVAIALLFSVSVFAQDAPKVGDTNEVNGQIWAQLKAGEEGYTTSTSEFHGQAINTYDLRVLDLRSDILAPAM
MAALFGMIIIFVLFIKVNGISKLHGGFSGKLVYRWSKFDVSIHWLGAIPCLLLILTGLTLLAGRFFFQPYIGEGLWAGLV
NGAKQIHDIMAIPFMIGWALMTVLWAKNQMPKMYDLKWMMVVGGYINFGPFKGKHPDAGFANAGEKLWFWAFAVFGLVVS
ASGMLLLFPNLFEPSRTLSLIALVLHSVGAIIITAFSIVHIFMATVMSEGGMECMVSGYCDETWASQHHNLWFDEIKENG
TLKYKD
>Mature_326_residues
MNKWFKHIGVAIALLFSVSVFAQDAPKVGDTNEVNGQIWAQLKAGEEGYTTSTSEFHGQAINTYDLRVLDLRSDILAPAM
MAALFGMIIIFVLFIKVNGISKLHGGFSGKLVYRWSKFDVSIHWLGAIPCLLLILTGLTLLAGRFFFQPYIGEGLWAGLV
NGAKQIHDIMAIPFMIGWALMTVLWAKNQMPKMYDLKWMMVVGGYINFGPFKGKHPDAGFANAGEKLWFWAFAVFGLVVS
ASGMLLLFPNLFEPSRTLSLIALVLHSVGAIIITAFSIVHIFMATVMSEGGMECMVSGYCDETWASQHHNLWFDEIKENG
TLKYKD

Specific function: Allows To Use Formate As Major Electron Donor During Aerobic Respiration. Subunit Gamma Is Probably The Cytochrome B556(Fdo) Component Of The Formate Dehydrogenase. [C]

COG id: COG2864

COG function: function code C; Cytochrome b subunit of formate dehydrogenase

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790325, Length=109, Percent_Identity=33.0275229357798, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787750, Length=225, Percent_Identity=23.5555555555556, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 1.2.1.2

Molecular weight: Translated: 36220; Mature: 36220

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKWFKHIGVAIALLFSVSVFAQDAPKVGDTNEVNGQIWAQLKAGEEGYTTSTSEFHGQA
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHCCCE
INTYDLRVLDLRSDILAPAMMAALFGMIIIFVLFIKVNGISKLHGGFSGKLVYRWSKFDV
ECEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEEEEEEEEEEE
SIHWLGAIPCLLLILTGLTLLAGRFFFQPYIGEGLWAGLVNGAKQIHDIMAIPFMIGWAL
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MTVLWAKNQMPKMYDLKWMMVVGGYINFGPFKGKHPDAGFANAGEKLWFWAFAVFGLVVS
HHHHHHCCCCCCHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
ASGMLLLFPNLFEPSRTLSLIALVLHSVGAIIITAFSIVHIFMATVMSEGGMECMVSGYC
CCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
DETWASQHHNLWFDEIKENGTLKYKD
CHHHHHCCCCCCHHHHCCCCCEEECC
>Mature Secondary Structure
MNKWFKHIGVAIALLFSVSVFAQDAPKVGDTNEVNGQIWAQLKAGEEGYTTSTSEFHGQA
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHCCCE
INTYDLRVLDLRSDILAPAMMAALFGMIIIFVLFIKVNGISKLHGGFSGKLVYRWSKFDV
ECEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEEEEEEEEEEE
SIHWLGAIPCLLLILTGLTLLAGRFFFQPYIGEGLWAGLVNGAKQIHDIMAIPFMIGWAL
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MTVLWAKNQMPKMYDLKWMMVVGGYINFGPFKGKHPDAGFANAGEKLWFWAFAVFGLVVS
HHHHHHCCCCCCHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
ASGMLLLFPNLFEPSRTLSLIALVLHSVGAIIITAFSIVHIFMATVMSEGGMECMVSGYC
CCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
DETWASQHHNLWFDEIKENGTLKYKD
CHHHHHCCCCCCHHHHCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: formate; NAD+

Specific reaction: formate + NAD+ = CO2 + NADH

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA