Click here to switch to the map view.

The map label for this gene is ygiW [H]

Identifier: 157963923

GI number: 157963923

Start: 4998479

End: 4998829

Strand: Reverse

Name: ygiW [H]

Synonym: Spea_4112

Alternate gene names: 157963923

Gene position: 4998829-4998479 (Counterclockwise)

Preceding gene: 157963924

Following gene: 157963922

Centisome position: 96.6

GC content: 43.3

Gene sequence:

>351_bases
ATGTCTAAGAAATTAACAGGTTTAATCATTTTATCAGCAGTATTAACTATGCCGGCAATGGCTGCATATAATGGCCCCGG
TGTGGCAAGCCATGTTAATACTGCCGCCGATGCTGCTAACGCAAAGGACGATACCCCTGTTGAGTTGACGGGCTACTTGG
TACAAAGCCTCGGCGATGAAAATTATTTGTTTCGTGATGAGAGTGGTGACATTAAAGTCGAGATCGACAACAGATTAATG
CGTGATATTGAGATCACTGGTGAGAGCAAGGTAAAATTAGTGGGTCAAGTCGACGACGAGTGGCAAGGTATTGAAATAGA
AATTGACAGCTTGCGTCTGGTTTCTGAATAA

Upstream 100 bases:

>100_bases
TAAGCTTTAAGCGTATGATCAAAGTTTAATCTTTGATCCATCTAGATGTTATACACAATGTCATAAACTGAGCCCCTATA
TTTGAGAGGAGTGCTATTTT

Downstream 100 bases:

>100_bases
TCCTTTAAAAAAGTAGTTTTGCGTTTTATTTTCGGAGGAGCCATGGCTCGTTGGCTAATTGGTTTGTTATTAGTATCTGG
TAGCTCGTTTGCTAGCCAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 115

Protein sequence:

>116_residues
MSKKLTGLIILSAVLTMPAMAAYNGPGVASHVNTAADAANAKDDTPVELTGYLVQSLGDENYLFRDESGDIKVEIDNRLM
RDIEITGESKVKLVGQVDDEWQGIEIEIDSLRLVSE

Sequences:

>Translated_116_residues
MSKKLTGLIILSAVLTMPAMAAYNGPGVASHVNTAADAANAKDDTPVELTGYLVQSLGDENYLFRDESGDIKVEIDNRLM
RDIEITGESKVKLVGQVDDEWQGIEIEIDSLRLVSE
>Mature_115_residues
SKKLTGLIILSAVLTMPAMAAYNGPGVASHVNTAADAANAKDDTPVELTGYLVQSLGDENYLFRDESGDIKVEIDNRLMR
DIEITGESKVKLVGQVDDEWQGIEIEIDSLRLVSE

Specific function: Unknown

COG id: COG3111

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1709 [H]

Homologues:

Organism=Escherichia coli, GI1789401, Length=128, Percent_Identity=32.03125, Blast_Score=74, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016052
- InterPro:   IPR005220 [H]

Pfam domain/function: PF04076 BOF [H]

EC number: NA

Molecular weight: Translated: 12595; Mature: 12464

Theoretical pI: Translated: 4.06; Mature: 4.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKLTGLIILSAVLTMPAMAAYNGPGVASHVNTAADAANAKDDTPVELTGYLVQSLGDE
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCHHCCCCCCCCCCCHHHHHHHHHCCCC
NYLFRDESGDIKVEIDNRLMRDIEITGESKVKLVGQVDDEWQGIEIEIDSLRLVSE
CCEEECCCCCEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCEEEEEEEEEEECC
>Mature Secondary Structure 
SKKLTGLIILSAVLTMPAMAAYNGPGVASHVNTAADAANAKDDTPVELTGYLVQSLGDE
CCCHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCHHCCCCCCCCCCCHHHHHHHHHCCCC
NYLFRDESGDIKVEIDNRLMRDIEITGESKVKLVGQVDDEWQGIEIEIDSLRLVSE
CCEEECCCCCEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]