BacMap

Definition	Shewanella pealeana ATCC 700345 chromosome, complete genome.
Accession	NC_009901
Length	5,174,581

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The map label for this gene is yphE [C]

Identifier: 157963898

GI number: 157963898

Start: 4967741

End: 4969105

Strand: Reverse

Name: yphE [C]

Synonym: Spea_4087

Alternate gene names: 157963898

Gene position: 4969105-4967741 (Counterclockwise)

Preceding gene: 157963899

Following gene: 157963897

Centisome position: 96.03

GC content: 47.62

Gene sequence:

>1365_bases
ATGAAACTCATAGCGCTAGAAGGGATTCATTTCGGCTATGGATCGAACCAAAGCGAGATCTTGGATGATCTCAATTTGGT
TGTTAATCCGGGTGAATGCCACTGCATTAATGGTCCAACAGGCTCGGGGAAATCCAGTCTATTGCATCTACTCGCAGGGG
AGCTGTCTCGACCCTATGAGGGGGACGTATATCGTCATCCCTCATTGTTGGTCGGCCTGGTCATGCAAGATCCCAATGTA
CAGGTTCTACGCCAAAGTGTCGGCGCTGAAATTGCTTTTGCTTTGGAAAACCTCGGCATAGCAGCCGACTCCATGGTTGA
AAAGGTGCAGCATTCACTGCGGCGAGTCGGCCTGTATATCAGCCTAGATACGCCTGTTGAAGTGCTGTCGCTAGGGCAGA
AATATCGGCTGATGTTAGCGGCACAGTTAGTGTTTAAGCCATCGCTACTGTTACTCGATGAGCCTTGGGCGCAGCTCGAT
GATAATGGCGTGAAAGAGCTCAATAGCGTACTAAAAGCCTTACTAGATGATGGCGTGGCGATAGTCATGGTCGAGCATAA
TCCCAGCGCATTTGCGAGCTTAGTTGACCACCTCTGGTTACTTGAGGGCGGCCAGCTTAGAGTTGGGCAGCGTCAGCATG
CTCCGGCCATAGCTGAACTCGTGAACATAAGAGCTAGTGTTAAATCCCGTCATCGTGATTGTGTGGTGAATATAGCGCCG
CATCAATTTCGTTTTGTTGACCAAGAGCCACTGTTTAATTGCGAGCAGAGCTTATCGCTGCATCGCGGTGAGACTGTAGC
TCTAGTTGGCGATAACGGCGCGGGTAAAAGTAGCTTACTGAAAACCTTAGCAGGCATTCAGGCCAACATCGCTAATTTAC
CGATAAAGGTAATGAATAAACGACCACAGCTGGGGATTTATGGCAGCGATTTAGGCCTATTAATGCAGCGACCTAATCGG
CAATTGTTTGAGCAAACGGTATTAACCGAACTGCAATTTAGCTTAAAACGCTTCAAGTTACCTTTGGTGCGGGCAGAACA
GATCTTGGCTGAGCTGGATTTGCAGGCATTAGCAGATTGCTCCCCACACAAGCTGTCTTATGGTCAGCAACATATTATTG
CTTTGGCTTCTTTAGTTTGTTTGCAGCCAAAGCTGTTACTGCTCGATGATCCTTTTGCAGGCTTAGATAAACAACATGTG
GCCAAAGTTGTGCAGATTATACTGCAATTGAGCGCTCAAGGCTGTGGCATCTTACTTTCGAGTCATCGTAGCTTGCCATT
TTTAGAAGTAGACCGTTACTGGCTTATTGAAAACGGTCATCTGCGTGATGGCGCACAAATATCAGAGCAAGTAAATGTGG
GCTAA

Upstream 100 bases:

>100_bases
TGTTTGATGAGCTTTATTATCAAAGTGACTTTATGCCGCAAGCGGGTCGTCAGGTGTTTGTCGGTATTAACTGGCAGCTA
TAGGGCTATCGGGGAAGAGT

Downstream 100 bases:

>100_bases
AGGGCGCATTGCAACCAAAATGGCATACTTTCGTATTACTGCCACCCAATATTGTGCCTGCGCATTACTGCTGAGCTTAG
TGTTATCGAGTAGCGCTTTT

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 454; Mature: 454

Protein sequence:

>454_residues
MKLIALEGIHFGYGSNQSEILDDLNLVVNPGECHCINGPTGSGKSSLLHLLAGELSRPYEGDVYRHPSLLVGLVMQDPNV
QVLRQSVGAEIAFALENLGIAADSMVEKVQHSLRRVGLYISLDTPVEVLSLGQKYRLMLAAQLVFKPSLLLLDEPWAQLD
DNGVKELNSVLKALLDDGVAIVMVEHNPSAFASLVDHLWLLEGGQLRVGQRQHAPAIAELVNIRASVKSRHRDCVVNIAP
HQFRFVDQEPLFNCEQSLSLHRGETVALVGDNGAGKSSLLKTLAGIQANIANLPIKVMNKRPQLGIYGSDLGLLMQRPNR
QLFEQTVLTELQFSLKRFKLPLVRAEQILAELDLQALADCSPHKLSYGQQHIIALASLVCLQPKLLLLDDPFAGLDKQHV
AKVVQIILQLSAQGCGILLSSHRSLPFLEVDRYWLIENGHLRDGAQISEQVNVG

Sequences:

>Translated_454_residues
MKLIALEGIHFGYGSNQSEILDDLNLVVNPGECHCINGPTGSGKSSLLHLLAGELSRPYEGDVYRHPSLLVGLVMQDPNV
QVLRQSVGAEIAFALENLGIAADSMVEKVQHSLRRVGLYISLDTPVEVLSLGQKYRLMLAAQLVFKPSLLLLDEPWAQLD
DNGVKELNSVLKALLDDGVAIVMVEHNPSAFASLVDHLWLLEGGQLRVGQRQHAPAIAELVNIRASVKSRHRDCVVNIAP
HQFRFVDQEPLFNCEQSLSLHRGETVALVGDNGAGKSSLLKTLAGIQANIANLPIKVMNKRPQLGIYGSDLGLLMQRPNR
QLFEQTVLTELQFSLKRFKLPLVRAEQILAELDLQALADCSPHKLSYGQQHIIALASLVCLQPKLLLLDDPFAGLDKQHV
AKVVQIILQLSAQGCGILLSSHRSLPFLEVDRYWLIENGHLRDGAQISEQVNVG
>Mature_454_residues
MKLIALEGIHFGYGSNQSEILDDLNLVVNPGECHCINGPTGSGKSSLLHLLAGELSRPYEGDVYRHPSLLVGLVMQDPNV
QVLRQSVGAEIAFALENLGIAADSMVEKVQHSLRRVGLYISLDTPVEVLSLGQKYRLMLAAQLVFKPSLLLLDEPWAQLD
DNGVKELNSVLKALLDDGVAIVMVEHNPSAFASLVDHLWLLEGGQLRVGQRQHAPAIAELVNIRASVKSRHRDCVVNIAP
HQFRFVDQEPLFNCEQSLSLHRGETVALVGDNGAGKSSLLKTLAGIQANIANLPIKVMNKRPQLGIYGSDLGLLMQRPNR
QLFEQTVLTELQFSLKRFKLPLVRAEQILAELDLQALADCSPHKLSYGQQHIIALASLVCLQPKLLLLDDPFAGLDKQHV
AKVVQIILQLSAQGCGILLSSHRSLPFLEVDRYWLIENGHLRDGAQISEQVNVG

Specific function: Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system [H]

COG id: COG1122

COG function: function code P; ABC-type cobalt transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI215820660, Length=188, Percent_Identity=31.9148936170213, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI20143975, Length=188, Percent_Identity=31.9148936170213, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI46592915, Length=193, Percent_Identity=31.0880829015544, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI46592971, Length=193, Percent_Identity=31.0880829015544, Blast_Score=72, Evalue=9e-13,
Organism=Homo sapiens, GI46592978, Length=193, Percent_Identity=31.0880829015544, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI46592898, Length=193, Percent_Identity=31.0880829015544, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI46592964, Length=193, Percent_Identity=31.0880829015544, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI46592956, Length=193, Percent_Identity=31.0880829015544, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI105990541, Length=238, Percent_Identity=24.7899159663866, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI27881501, Length=206, Percent_Identity=25.7281553398058, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI30795238, Length=206, Percent_Identity=25.7281553398058, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI11967969, Length=324, Percent_Identity=25.6172839506173, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI150417984, Length=212, Percent_Identity=27.8301886792453, Blast_Score=66, Evalue=6e-11,
Organism=Escherichia coli, GI1788897, Length=469, Percent_Identity=24.3070362473348, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1790190, Length=453, Percent_Identity=24.7240618101545, Blast_Score=96, Evalue=7e-21,
Organism=Escherichia coli, GI1790525, Length=488, Percent_Identity=23.3606557377049, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1788472, Length=489, Percent_Identity=22.4948875255624, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1789991, Length=491, Percent_Identity=25.050916496945, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI87081709, Length=213, Percent_Identity=26.7605633802817, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1786563, Length=207, Percent_Identity=31.4009661835749, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI87081791, Length=155, Percent_Identity=36.1290322580645, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787792, Length=475, Percent_Identity=22.7368421052632, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1786872, Length=162, Percent_Identity=30.8641975308642, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1789593, Length=203, Percent_Identity=27.5862068965517, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1787370, Length=213, Percent_Identity=29.1079812206573, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1788165, Length=202, Percent_Identity=30.6930693069307, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1786703, Length=206, Percent_Identity=28.1553398058252, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI1789891, Length=215, Percent_Identity=31.6279069767442, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI48995001, Length=194, Percent_Identity=28.8659793814433, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1789672, Length=222, Percent_Identity=27.027027027027, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787029, Length=215, Percent_Identity=28.3720930232558, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787089, Length=223, Percent_Identity=29.1479820627803, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788761, Length=216, Percent_Identity=30.5555555555556, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1789873, Length=223, Percent_Identity=27.3542600896861, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI87082267, Length=153, Percent_Identity=29.4117647058824, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1788225, Length=203, Percent_Identity=24.1379310344828, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1787164, Length=189, Percent_Identity=30.1587301587302, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1787105, Length=206, Percent_Identity=25.7281553398058, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1790467, Length=220, Percent_Identity=26.8181818181818, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1786319, Length=254, Percent_Identity=25.9842519685039, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1787500, Length=180, Percent_Identity=26.1111111111111, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1789751, Length=201, Percent_Identity=30.3482587064677, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI1788053, Length=186, Percent_Identity=27.9569892473118, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI87081834, Length=193, Percent_Identity=30.0518134715026, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1786398, Length=211, Percent_Identity=27.0142180094787, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1787712, Length=208, Percent_Identity=27.8846153846154, Blast_Score=62, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=201, Percent_Identity=27.8606965174129, Blast_Score=72, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI71984940, Length=224, Percent_Identity=29.0178571428571, Blast_Score=69, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17565586, Length=202, Percent_Identity=27.2277227722772, Blast_Score=66, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=225, Percent_Identity=25.7777777777778, Blast_Score=65, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6321121, Length=206, Percent_Identity=30.0970873786408, Blast_Score=77, Evalue=7e-15,
Organism=Saccharomyces cerevisiae, GI6320214, Length=193, Percent_Identity=30.5699481865285, Blast_Score=67, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6320874, Length=203, Percent_Identity=30.5418719211823, Blast_Score=66, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6325199, Length=213, Percent_Identity=28.6384976525822, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI28574744, Length=259, Percent_Identity=30.8880308880309, Blast_Score=90, Evalue=3e-18,
Organism=Drosophila melanogaster, GI161076682, Length=190, Percent_Identity=34.7368421052632, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI161076684, Length=190, Percent_Identity=34.7368421052632, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24581617, Length=190, Percent_Identity=34.7368421052632, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24581615, Length=190, Percent_Identity=34.7368421052632, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI19920532, Length=213, Percent_Identity=30.5164319248826, Blast_Score=76, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24580930, Length=213, Percent_Identity=30.5164319248826, Blast_Score=76, Evalue=5e-14,
Organism=Drosophila melanogaster, GI28574533, Length=348, Percent_Identity=23.5632183908046, Blast_Score=72, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24581191, Length=195, Percent_Identity=27.6923076923077, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24581189, Length=195, Percent_Identity=27.6923076923077, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24581193, Length=195, Percent_Identity=27.6923076923077, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24581195, Length=195, Percent_Identity=27.6923076923077, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI85724864, Length=207, Percent_Identity=29.951690821256, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24580555, Length=207, Percent_Identity=29.951690821256, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI85816269, Length=224, Percent_Identity=29.0178571428571, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24580553, Length=224, Percent_Identity=29.0178571428571, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI85724858, Length=203, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI85724856, Length=203, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24580547, Length=203, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24580551, Length=203, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24580549, Length=203, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24580545, Length=203, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24662800, Length=244, Percent_Identity=26.6393442622951, Blast_Score=65, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR003339 [H]

Pfam domain/function: PF00005 ABC_tran; PF02361 CbiQ [H]

EC number: NA

Molecular weight: Translated: 49845; Mature: 49845

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLIALEGIHFGYGSNQSEILDDLNLVVNPGECHCINGPTGSGKSSLLHLLAGELSRPYE
CEEEEEECEEECCCCCHHHHHHCCCEEECCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC
GDVYRHPSLLVGLVMQDPNVQVLRQSVGAEIAFALENLGIAADSMVEKVQHSLRRVGLYI
CCCEECCHHEEEEEECCCCHHHHHHHHCCHHEEHHHHCCCCHHHHHHHHHHHHHHEEEEE
SLDTPVEVLSLGQKYRLMLAAQLVFKPSLLLLDEPWAQLDDNGVKELNSVLKALLDDGVA
EECCCHHHHHCCHHHHHHHHHHHHHCCCEEEEECCHHHCCCCHHHHHHHHHHHHHCCCEE
IVMVEHNPSAFASLVDHLWLLEGGQLRVGQRQHAPAIAELVNIRASVKSRHRDCVVNIAP
EEEEECCHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
HQFRFVDQEPLFNCEQSLSLHRGETVALVGDNGAGKSSLLKTLAGIQANIANLPIKVMNK
CCEEECCCCCCCCCHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHEECC
RPQLGIYGSDLGLLMQRPNRQLFEQTVLTELQFSLKRFKLPLVRAEQILAELDLQALADC
CCCCEEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHCC
SPHKLSYGQQHIIALASLVCLQPKLLLLDDPFAGLDKQHVAKVVQIILQLSAQGCGILLS
CCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
SHRSLPFLEVDRYWLIENGHLRDGAQISEQVNVG
CCCCCCEEEECCEEEEECCCCCCCHHHHHHCCCC
>Mature Secondary Structure
MKLIALEGIHFGYGSNQSEILDDLNLVVNPGECHCINGPTGSGKSSLLHLLAGELSRPYE
CEEEEEECEEECCCCCHHHHHHCCCEEECCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC
GDVYRHPSLLVGLVMQDPNVQVLRQSVGAEIAFALENLGIAADSMVEKVQHSLRRVGLYI
CCCEECCHHEEEEEECCCCHHHHHHHHCCHHEEHHHHCCCCHHHHHHHHHHHHHHEEEEE
SLDTPVEVLSLGQKYRLMLAAQLVFKPSLLLLDEPWAQLDDNGVKELNSVLKALLDDGVA
EECCCHHHHHCCHHHHHHHHHHHHHCCCEEEEECCHHHCCCCHHHHHHHHHHHHHCCCEE
IVMVEHNPSAFASLVDHLWLLEGGQLRVGQRQHAPAIAELVNIRASVKSRHRDCVVNIAP
EEEEECCHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
HQFRFVDQEPLFNCEQSLSLHRGETVALVGDNGAGKSSLLKTLAGIQANIANLPIKVMNK
CCEEECCCCCCCCCHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHEECC
RPQLGIYGSDLGLLMQRPNRQLFEQTVLTELQFSLKRFKLPLVRAEQILAELDLQALADC
CCCCEEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHCC
SPHKLSYGQQHIIALASLVCLQPKLLLLDDPFAGLDKQHVAKVVQIILQLSAQGCGILLS
CCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
SHRSLPFLEVDRYWLIENGHLRDGAQISEQVNVG
CCCCCCEEEECCEEEEECCCCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12381787 [H]