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The map label for this gene is yabJ [H]

Identifier: 157963890

GI number: 157963890

Start: 4959364

End: 4959747

Strand: Direct

Name: yabJ [H]

Synonym: Spea_4079

Alternate gene names: 157963890

Gene position: 4959364-4959747 (Clockwise)

Preceding gene: 157963889

Following gene: 157963891

Centisome position: 95.84

GC content: 44.53

Gene sequence:

>384_bases
ATGAAAACTGTAATCCATACTGAAAATGCTCCTGCTGCAATTGGTCCATACTCTCAAGCTCTTGCTTTCGACAAGTTAGT
ATTCACCTCTGGTCAGCTACCTCTTGATCCAGTGACTATGGCTTTCGTTGAAGGCGGCGTTAAAGAGCAAGCTTACCAAT
CTCTAAAGAACCTTAAAGCTGTTCTAGAGCAAGCTGGCGCGGGTACTGACACTGTACTTAAGACAACTTGTTTCCTAGCT
AACATGGAAGACTTCGCTGTATTCAACGAAGTGTACACTGAAGTATTCGGTACTGAAGCGGCTCCAGCTCGCTCATGCGT
ACAAGCTGCTCGTCTTCCAAAAGACGCACTAGTTGAAGTTGAAGCGATTGCTTTCATCAAATAA

Upstream 100 bases:

>100_bases
GAAGCTACTAACATAGTTTCTAACCATTTAAGCATTACCAAGCATGCGGTGTACAAGTACATCCGTGAATTTAAATCCTA
ATTATCGAGATAACAACGCT

Downstream 100 bases:

>100_bases
CTTAAATTTAGGTTATTAACGACCTATTTAAGTCAATCTGACTGTCCATTTGCCAACATGGGTTAAGTGGACAGCAGTCC
TCCTGTTCAAAATTTATAGT

Product: putative endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MKTVIHTENAPAAIGPYSQALAFDKLVFTSGQLPLDPVTMAFVEGGVKEQAYQSLKNLKAVLEQAGAGTDTVLKTTCFLA
NMEDFAVFNEVYTEVFGTEAAPARSCVQAARLPKDALVEVEAIAFIK

Sequences:

>Translated_127_residues
MKTVIHTENAPAAIGPYSQALAFDKLVFTSGQLPLDPVTMAFVEGGVKEQAYQSLKNLKAVLEQAGAGTDTVLKTTCFLA
NMEDFAVFNEVYTEVFGTEAAPARSCVQAARLPKDALVEVEAIAFIK
>Mature_127_residues
MKTVIHTENAPAAIGPYSQALAFDKLVFTSGQLPLDPVTMAFVEGGVKEQAYQSLKNLKAVLEQAGAGTDTVLKTTCFLA
NMEDFAVFNEVYTEVFGTEAAPARSCVQAARLPKDALVEVEAIAFIK

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=125, Percent_Identity=44.8, Blast_Score=116, Evalue=5e-27,
Organism=Escherichia coli, GI87082213, Length=126, Percent_Identity=47.6190476190476, Blast_Score=119, Evalue=9e-29,
Organism=Escherichia coli, GI87082396, Length=126, Percent_Identity=49.2063492063492, Blast_Score=118, Evalue=2e-28,
Organism=Escherichia coli, GI1787245, Length=125, Percent_Identity=31.2, Blast_Score=66, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI25148896, Length=124, Percent_Identity=50.8064516129032, Blast_Score=115, Evalue=6e-27,
Organism=Caenorhabditis elegans, GI71982075, Length=124, Percent_Identity=50.8064516129032, Blast_Score=115, Evalue=6e-27,
Organism=Caenorhabditis elegans, GI71982068, Length=124, Percent_Identity=50.8064516129032, Blast_Score=115, Evalue=7e-27,
Organism=Saccharomyces cerevisiae, GI6322138, Length=125, Percent_Identity=40.8, Blast_Score=96, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6320899, Length=104, Percent_Identity=43.2692307692308, Blast_Score=86, Evalue=1e-18,
Organism=Drosophila melanogaster, GI19921376, Length=125, Percent_Identity=49.6, Blast_Score=122, Evalue=6e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13601; Mature: 13601

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTVIHTENAPAAIGPYSQALAFDKLVFTSGQLPLDPVTMAFVEGGVKEQAYQSLKNLKA
CCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
VLEQAGAGTDTVLKTTCFLANMEDFAVFNEVYTEVFGTEAAPARSCVQAARLPKDALVEV
HHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHH
EAIAFIK
HHHEECC
>Mature Secondary Structure
MKTVIHTENAPAAIGPYSQALAFDKLVFTSGQLPLDPVTMAFVEGGVKEQAYQSLKNLKA
CCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
VLEQAGAGTDTVLKTTCFLANMEDFAVFNEVYTEVFGTEAAPARSCVQAARLPKDALVEV
HHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHH
EAIAFIK
HHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 10368157; 14594850; 10557275 [H]