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The map label for this gene is yahB [H]

Identifier: 157963863

GI number: 157963863

Start: 4922889

End: 4923767

Strand: Reverse

Name: yahB [H]

Synonym: Spea_4052

Alternate gene names: 157963863

Gene position: 4923767-4922889 (Counterclockwise)

Preceding gene: 157963865

Following gene: 157963862

Centisome position: 95.15

GC content: 47.78

Gene sequence:

>879_bases
ATGAATTGGACGATTGATGAGCTCAATGCATTTGTAAATTCGGTAAAGCTAGGCTCATTTTCGGCGGCAGCCAGAAAGAT
GGGGAAAGCTCAATCGCGTATAAGTACCGCGATTAGTAACTTAGAAGCGGGCTTAGGTTTTGAGTTATTTGACCGCAGCG
CAAGACTTCCTGTACTCACTTCACTCGGCGAAGAGATGTTTATTGAGGCGCAATCGGTTCTGGCTCAGTGTCAGCGCCTT
AATGCGCGTGCTATGACCGTCACCTCAGGTGAGGAGATCACCCTTACCGTGGCTATGGATGAAGCGGTACCGGTTACTGC
ATTTGAAGCGTTATTTCAGCGTATATCGACGCAATTCCCATTGCTTAAACTCACTATCATTAATGGATCGCAAGAGGATA
TTGCCGCTTGGGTGGATGCCGGGCGCGCCGATATTGGCATTATGTTCCATAGCAACACATTGCTACCAGACTCCCTAGAT
TTCATGTCGATTGGCCAGTTTAAACAGAGCTTAGTGGTCGCGCCATCCCATCCATTAGCATCGACCCCAGCGCCGACTTT
AGAGCTGTTGATGCAATATCGGCAGTTAGCTATTTGCGACATTACCGGGCAATCACAGACGCCGCCTTTATCGGCAAATT
ATTGGTATATCGATAGTTACTATTACATTGTCGCGCTAGTTTTGCAGGGCGTGGGCTGGGCGTTAGTGCCAGAACACGTG
GCTAAATCTGAGTGGTATATTGATGACCTTTGTGAGCTTTCCACAGAATATATTACCGAGCCTTTGCTGGTGGAGATGGG
GGTAGTTAATCGTCGTGACAAGCAAATCGGCCCGATAATGCACTGGTTGTTTGATGAGTTACATTCGGTGTTGCAATGA

Upstream 100 bases:

>100_bases
GTAGCTGTTTAAGATAGCTGTTTAAGGTAGCTGTTTAAGGTAGTTGTATGAGCCACCTGTTTAAGATGGCTGTTTGAGTA
GGTGTTTAAATAGGTTGGCT

Downstream 100 bases:

>100_bases
TAATAAAGAAGGTACGAGGACGGACTTCGTCCTGATAGGTCCTAGGTACTAGGACGTTCGCAGGCTCACTGCTAGGACGG
TGCTACGCACCTACGAGGAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MNWTIDELNAFVNSVKLGSFSAAARKMGKAQSRISTAISNLEAGLGFELFDRSARLPVLTSLGEEMFIEAQSVLAQCQRL
NARAMTVTSGEEITLTVAMDEAVPVTAFEALFQRISTQFPLLKLTIINGSQEDIAAWVDAGRADIGIMFHSNTLLPDSLD
FMSIGQFKQSLVVAPSHPLASTPAPTLELLMQYRQLAICDITGQSQTPPLSANYWYIDSYYYIVALVLQGVGWALVPEHV
AKSEWYIDDLCELSTEYITEPLLVEMGVVNRRDKQIGPIMHWLFDELHSVLQ

Sequences:

>Translated_292_residues
MNWTIDELNAFVNSVKLGSFSAAARKMGKAQSRISTAISNLEAGLGFELFDRSARLPVLTSLGEEMFIEAQSVLAQCQRL
NARAMTVTSGEEITLTVAMDEAVPVTAFEALFQRISTQFPLLKLTIINGSQEDIAAWVDAGRADIGIMFHSNTLLPDSLD
FMSIGQFKQSLVVAPSHPLASTPAPTLELLMQYRQLAICDITGQSQTPPLSANYWYIDSYYYIVALVLQGVGWALVPEHV
AKSEWYIDDLCELSTEYITEPLLVEMGVVNRRDKQIGPIMHWLFDELHSVLQ
>Mature_292_residues
MNWTIDELNAFVNSVKLGSFSAAARKMGKAQSRISTAISNLEAGLGFELFDRSARLPVLTSLGEEMFIEAQSVLAQCQRL
NARAMTVTSGEEITLTVAMDEAVPVTAFEALFQRISTQFPLLKLTIINGSQEDIAAWVDAGRADIGIMFHSNTLLPDSLD
FMSIGQFKQSLVVAPSHPLASTPAPTLELLMQYRQLAICDITGQSQTPPLSANYWYIDSYYYIVALVLQGVGWALVPEHV
AKSEWYIDDLCELSTEYITEPLLVEMGVVNRRDKQIGPIMHWLFDELHSVLQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786508, Length=187, Percent_Identity=29.9465240641711, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI87082024, Length=232, Percent_Identity=27.1551724137931, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1789492, Length=283, Percent_Identity=24.7349823321555, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1786401, Length=284, Percent_Identity=27.112676056338, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787530, Length=176, Percent_Identity=28.9772727272727, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787879, Length=192, Percent_Identity=28.6458333333333, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788296, Length=194, Percent_Identity=28.3505154639175, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI145693105, Length=298, Percent_Identity=21.8120805369128, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32395; Mature: 32395

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNWTIDELNAFVNSVKLGSFSAAARKMGKAQSRISTAISNLEAGLGFELFDRSARLPVLT
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHH
SLGEEMFIEAQSVLAQCQRLNARAMTVTSGEEITLTVAMDEAVPVTAFEALFQRISTQFP
HCCHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEEECCCCCHHHHHHHHHHHCCCCC
LLKLTIINGSQEDIAAWVDAGRADIGIMFHSNTLLPDSLDFMSIGQFKQSLVVAPSHPLA
EEEEEEECCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHEEECCCCCCC
STPAPTLELLMQYRQLAICDITGQSQTPPLSANYWYIDSYYYIVALVLQGVGWALVPEHV
CCCCHHHHHHHHHHHHEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCEECHHHH
AKSEWYIDDLCELSTEYITEPLLVEMGVVNRRDKQIGPIMHWLFDELHSVLQ
HCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MNWTIDELNAFVNSVKLGSFSAAARKMGKAQSRISTAISNLEAGLGFELFDRSARLPVLT
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHH
SLGEEMFIEAQSVLAQCQRLNARAMTVTSGEEITLTVAMDEAVPVTAFEALFQRISTQFP
HCCHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEEECCCCCHHHHHHHHHHHCCCCC
LLKLTIINGSQEDIAAWVDAGRADIGIMFHSNTLLPDSLDFMSIGQFKQSLVVAPSHPLA
EEEEEEECCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHEEECCCCCCC
STPAPTLELLMQYRQLAICDITGQSQTPPLSANYWYIDSYYYIVALVLQGVGWALVPEHV
CCCCHHHHHHHHHHHHEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCEECHHHH
AKSEWYIDDLCELSTEYITEPLLVEMGVVNRRDKQIGPIMHWLFDELHSVLQ
HCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]