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The map label for this gene is yibH [H]

Identifier: 157963803

GI number: 157963803

Start: 4850613

End: 4851836

Strand: Reverse

Name: yibH [H]

Synonym: Spea_3992

Alternate gene names: 157963803

Gene position: 4851836-4850613 (Counterclockwise)

Preceding gene: 157963804

Following gene: 157963801

Centisome position: 93.76

GC content: 48.86

Gene sequence:

>1224_bases
ATGCTTGAAGGCTTAGCAGTATGGGCACTATTTATCTACCTTCTGCGTCTCGTAGGTATGCCTTGGAATGCCTACAGTAA
AGCATTTGCTTACCTTGGCGGTACTGGCTGGTTGATGTTTGTCTGGGTGGGTTTACTTAACTATACCCCGATGGATCTGT
CGGGTGGCTCTTTGGTGCAATCACCTCACATTCAGTTGCGTCCGGCAAACTCGCAGATCCGAGGTAAGGTAGAGAATATC
TATGTGAAGCCTAACCAGAAGGTCGAGGCTGGGCAGCTGATCTATGACTTAGATGCCGAGCCCTATCAAATCGCACTGAA
TAAGGCGTTGGTGGCGCAGGAAACTGCGAAGGTAAACCTGTCATTGTCTAGAGAAGATGTAAAGCTAGCGCTTAAGCAGC
ATGAAGTGGCGATAGCCGACGTCAGTATCACCAAGAATCAGCTAAATGCAGCGTCTAAAGACCTCGCTTGGAAGCAGAAG
ACATTGGCACGTTTTGTTGAGCAGAATCGTGTCGTGCCGGACACTATCACTAAGAGCCAATTAGATGAGCAGCAAACGGC
GGTCGATCTGGCTAATGCACAGGTGCAGACCTACTCAACTCAAATTGAGAAGGCGCAGATGGCCGAGCATACGGCGCTGC
TGAATATTGAAAAGTCTCGCTTGGCGGTAGAGAGTCGCCAGTCAGATCTCAATAGCGAACATGAAAATGTCGCTCAAGCG
CAATGGAACATAGACAACACCAAGATCTATGCGCCAACCGATGGTTACGTGACAAACTTTATCATGCGTGAAGGCCAGTA
TGTTGGCGTGGCGCCACGTATGCAGATGTACACTAATGAAAAGTACGTGTTGATGCGGGTGAACCATCAGGCTATTCGTA
ACGTCAAGGTCGGTCAGTTGGCTGAGTTCGCCTCTGCTGTCTATCCCGGCAAAGTATTTAGCGCTGAAGTCGAGGGTATA
GTCGAGGCGACAGGAGAGTCACAGGGGCGTTTAGTCGCCTTAGATGACAATGTGAGGCAGACTACCGGGCAGAACCTCAA
TAATAAGCATCACTTTGTCAGACTTAAACTGACCGAAAGCGGTGATTACGACATTCCTGTCGGCTCAGTTGGACTCGCAT
GGATCTCTGGCACTAAGCCGATAGAGTTCTTAGCGTTCTTAGATGTGATCCGCGGAATTGTCATCCGAATGAAGTCGCAA
ATCTACTACTTCTACTCTATTTAG

Upstream 100 bases:

>100_bases
GTCGATGGCGAGAAGGCGCTGCGGCAAATACGAGATGTATGGCGCGAGAAAGAGCCGCAAGCGATAGTGAATGAGCCGGC
TGTAAAAGAGGAGCAAACCA

Downstream 100 bases:

>100_bases
TTATATTTATCCCCCAAGCCATAAGGCTTGGGGGTTTTATTATCAGCCCTAAGTCACCGACTTCTGCAGAAGGCTAGTAC
TTGCTAGGCAAATACTTGAT

Product: secretion protein HlyD family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MLEGLAVWALFIYLLRLVGMPWNAYSKAFAYLGGTGWLMFVWVGLLNYTPMDLSGGSLVQSPHIQLRPANSQIRGKVENI
YVKPNQKVEAGQLIYDLDAEPYQIALNKALVAQETAKVNLSLSREDVKLALKQHEVAIADVSITKNQLNAASKDLAWKQK
TLARFVEQNRVVPDTITKSQLDEQQTAVDLANAQVQTYSTQIEKAQMAEHTALLNIEKSRLAVESRQSDLNSEHENVAQA
QWNIDNTKIYAPTDGYVTNFIMREGQYVGVAPRMQMYTNEKYVLMRVNHQAIRNVKVGQLAEFASAVYPGKVFSAEVEGI
VEATGESQGRLVALDDNVRQTTGQNLNNKHHFVRLKLTESGDYDIPVGSVGLAWISGTKPIEFLAFLDVIRGIVIRMKSQ
IYYFYSI

Sequences:

>Translated_407_residues
MLEGLAVWALFIYLLRLVGMPWNAYSKAFAYLGGTGWLMFVWVGLLNYTPMDLSGGSLVQSPHIQLRPANSQIRGKVENI
YVKPNQKVEAGQLIYDLDAEPYQIALNKALVAQETAKVNLSLSREDVKLALKQHEVAIADVSITKNQLNAASKDLAWKQK
TLARFVEQNRVVPDTITKSQLDEQQTAVDLANAQVQTYSTQIEKAQMAEHTALLNIEKSRLAVESRQSDLNSEHENVAQA
QWNIDNTKIYAPTDGYVTNFIMREGQYVGVAPRMQMYTNEKYVLMRVNHQAIRNVKVGQLAEFASAVYPGKVFSAEVEGI
VEATGESQGRLVALDDNVRQTTGQNLNNKHHFVRLKLTESGDYDIPVGSVGLAWISGTKPIEFLAFLDVIRGIVIRMKSQ
IYYFYSI
>Mature_407_residues
MLEGLAVWALFIYLLRLVGMPWNAYSKAFAYLGGTGWLMFVWVGLLNYTPMDLSGGSLVQSPHIQLRPANSQIRGKVENI
YVKPNQKVEAGQLIYDLDAEPYQIALNKALVAQETAKVNLSLSREDVKLALKQHEVAIADVSITKNQLNAASKDLAWKQK
TLARFVEQNRVVPDTITKSQLDEQQTAVDLANAQVQTYSTQIEKAQMAEHTALLNIEKSRLAVESRQSDLNSEHENVAQA
QWNIDNTKIYAPTDGYVTNFIMREGQYVGVAPRMQMYTNEKYVLMRVNHQAIRNVKVGQLAEFASAVYPGKVFSAEVEGI
VEATGESQGRLVALDDNVRQTTGQNLNNKHHFVRLKLTESGDYDIPVGSVGLAWISGTKPIEFLAFLDVIRGIVIRMKSQ
IYYFYSI

Specific function: Unknown

COG id: COG1566

COG function: function code V; Multidrug resistance efflux pump

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI1790024, Length=416, Percent_Identity=23.0769230769231, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1790012, Length=416, Percent_Identity=22.5961538461538, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 45604; Mature: 45604

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEGLAVWALFIYLLRLVGMPWNAYSKAFAYLGGTGWLMFVWVGLLNYTPMDLSGGSLVQ
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCEEE
SPHIQLRPANSQIRGKVENIYVKPNQKVEAGQLIYDLDAEPYQIALNKALVAQETAKVNL
CCCEEEECCCHHHCCEEEEEEECCCCCCCCCCEEEECCCCCEEEEHHHHHHHHCCEEEEE
SLSREDVKLALKQHEVAIADVSITKNQLNAASKDLAWKQKTLARFVEQNRVVPDTITKSQ
EECHHHHHHHHHHCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
LDEQQTAVDLANAQVQTYSTQIEKAQMAEHTALLNIEKSRLAVESRQSDLNSEHENVAQA
HHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHCCCHHHHHHHH
QWNIDNTKIYAPTDGYVTNFIMREGQYVGVAPRMQMYTNEKYVLMRVNHQAIRNVKVGQL
EECCCCCEEEECCCCHHHHHHHHCCCEEECCCCHHEECCCEEEEEEECHHHHHCCCHHHH
AEFASAVYPGKVFSAEVEGIVEATGESQGRLVALDDNVRQTTGQNLNNKHHFVRLKLTES
HHHHHHCCCCCEEHHHHHHHHCCCCCCCCEEEEECCCHHHHCCCCCCCCEEEEEEEEECC
GDYDIPVGSVGLAWISGTKPIEFLAFLDVIRGIVIRMKSQIYYFYSI
CCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHEEECCEEEEEEC
>Mature Secondary Structure
MLEGLAVWALFIYLLRLVGMPWNAYSKAFAYLGGTGWLMFVWVGLLNYTPMDLSGGSLVQ
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCEEE
SPHIQLRPANSQIRGKVENIYVKPNQKVEAGQLIYDLDAEPYQIALNKALVAQETAKVNL
CCCEEEECCCHHHCCEEEEEEECCCCCCCCCCEEEECCCCCEEEEHHHHHHHHCCEEEEE
SLSREDVKLALKQHEVAIADVSITKNQLNAASKDLAWKQKTLARFVEQNRVVPDTITKSQ
EECHHHHHHHHHHCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
LDEQQTAVDLANAQVQTYSTQIEKAQMAEHTALLNIEKSRLAVESRQSDLNSEHENVAQA
HHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHCCCHHHHHHHH
QWNIDNTKIYAPTDGYVTNFIMREGQYVGVAPRMQMYTNEKYVLMRVNHQAIRNVKVGQL
EECCCCCEEEECCCCHHHHHHHHCCCEEECCCCHHEECCCEEEEEEECHHHHHCCCHHHH
AEFASAVYPGKVFSAEVEGIVEATGESQGRLVALDDNVRQTTGQNLNNKHHFVRLKLTES
HHHHHHCCCCCEEHHHHHHHHCCCCCCCCEEEEECCCHHHHCCCCCCCCEEEEEEEEECC
GDYDIPVGSVGLAWISGTKPIEFLAFLDVIRGIVIRMKSQIYYFYSI
CCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHEEECCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]