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The map label for this gene is ydaM [H]

Identifier: 157963802

GI number: 157963802

Start: 4849339

End: 4850529

Strand: Direct

Name: ydaM [H]

Synonym: Spea_3991

Alternate gene names: 157963802

Gene position: 4849339-4850529 (Clockwise)

Preceding gene: 157963800

Following gene: 157963805

Centisome position: 93.71

GC content: 44.08

Gene sequence:

>1191_bases
GTGCCAGTATTAGAGCGAAGTTTGCGCTATCTGTTTATTCCTATTGTCATCACCTTTCTCTATATCGTGATCACCCAGCA
TCTATCGACAATATGGCAAGGCTGGCTACCTAAAATAAATGAGCTGCCCTATTTCTTACTCGGCATATCCGCAGTCCTAG
CACTGCTGTTTAATTGTTGGCGTATAAGTTATCTGTCGCTACTCTTGCTTGGGTATTACTACTTTGAATCAAGCCCAGCG
CTGCTCCCGGAGCTGGCATTGCTGAGCCAAGAGCAGGTGATCCTGACTGGTACCTTAATAATTACTTTCTTTGCCACGTT
CAAAGACAGGGCACTATTCTCAATATATTTTTTCAAGACTGTTCTCGCGATAGGGCTATGCGTTATCTTAACCTTGGGCT
GGAGCGCAGTGATTACTCACCTCAGCTCTGTCGATGCTGGATTGCTACCCAATACACTCAAACTGCTTACCTCTTTATAT
GCCCCTATCGGCATATCATGCATAGTACTTTGTATTTTTACGATTTGGCGTGCGACGGGTGTCGACTCCGCTATCATGGT
TACACTCTTCATCTGGTTATTTCATTTCTATCTACCCGATGAGTTACCCCTGTCGATATTGCTAACCATACTCGCCCTAG
CATACTTAACCTCTATCTTAGTCAGGAGCCATAATCTTGCCTACAGAGACGAATTGACTGGACTAGCCTCTCGTCGCTCT
CTCAATACTTTGGCCCATTCACTCAATAAGCATTACTGCCTCGCTATGGTCGATATCGATCACTTTAAAAAGTTTAACGA
TACCTATGGCCATGATGTTGGTGATCAAGTGTTGCAATTAGTAGCAAAGAAACTCAGTAAGGTAGAAGGGGGCGGCAAGG
TATTTCGCTATGGCGGAGAGGAGTTCACCATAGTGTTCACCAATAAAAACATAGAAGCTGTATTGCCTCTATTGGAAGAG
ATCCGACGTAAAATCAGTCAATACAATATCGTGCTGCGAAATCAGCGGCGAAAAAATCAGAGCAAATTAAATAGAGATGA
GGGCCACAAAACAAACCCTGTGGTAAATATTACTATCTCGATCGGGGTGGCCGAACAGCACGGAGAAACCTCGTTTGAAA
ACACACTTAAACGTGCCGACAAGGCCCTCTACAAGGCAAAAAACAATGGTCGTAATCAAGTATTTGCCTAG

Upstream 100 bases:

>100_bases
CTGCAAAAAGAGGCCTTAAGTATGCGCGATGAGGATAAGACTCAGGTTTAAGACTAATGGACTATAATCTAGATCTAGCC
ATCATCAAGGAGGATTAGCA

Downstream 100 bases:

>100_bases
CAAGTACTAGCCTTCTGCAGAAGTCGGTGACTTAGGGCTGATAATAAAACCCCCAAGCCTTATGGCTTGGGGGATAAATA
TAACTAAATAGAGTAGAAGT

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MPVLERSLRYLFIPIVITFLYIVITQHLSTIWQGWLPKINELPYFLLGISAVLALLFNCWRISYLSLLLLGYYYFESSPA
LLPELALLSQEQVILTGTLIITFFATFKDRALFSIYFFKTVLAIGLCVILTLGWSAVITHLSSVDAGLLPNTLKLLTSLY
APIGISCIVLCIFTIWRATGVDSAIMVTLFIWLFHFYLPDELPLSILLTILALAYLTSILVRSHNLAYRDELTGLASRRS
LNTLAHSLNKHYCLAMVDIDHFKKFNDTYGHDVGDQVLQLVAKKLSKVEGGGKVFRYGGEEFTIVFTNKNIEAVLPLLEE
IRRKISQYNIVLRNQRRKNQSKLNRDEGHKTNPVVNITISIGVAEQHGETSFENTLKRADKALYKAKNNGRNQVFA

Sequences:

>Translated_396_residues
MPVLERSLRYLFIPIVITFLYIVITQHLSTIWQGWLPKINELPYFLLGISAVLALLFNCWRISYLSLLLLGYYYFESSPA
LLPELALLSQEQVILTGTLIITFFATFKDRALFSIYFFKTVLAIGLCVILTLGWSAVITHLSSVDAGLLPNTLKLLTSLY
APIGISCIVLCIFTIWRATGVDSAIMVTLFIWLFHFYLPDELPLSILLTILALAYLTSILVRSHNLAYRDELTGLASRRS
LNTLAHSLNKHYCLAMVDIDHFKKFNDTYGHDVGDQVLQLVAKKLSKVEGGGKVFRYGGEEFTIVFTNKNIEAVLPLLEE
IRRKISQYNIVLRNQRRKNQSKLNRDEGHKTNPVVNITISIGVAEQHGETSFENTLKRADKALYKAKNNGRNQVFA
>Mature_395_residues
PVLERSLRYLFIPIVITFLYIVITQHLSTIWQGWLPKINELPYFLLGISAVLALLFNCWRISYLSLLLLGYYYFESSPAL
LPELALLSQEQVILTGTLIITFFATFKDRALFSIYFFKTVLAIGLCVILTLGWSAVITHLSSVDAGLLPNTLKLLTSLYA
PIGISCIVLCIFTIWRATGVDSAIMVTLFIWLFHFYLPDELPLSILLTILALAYLTSILVRSHNLAYRDELTGLASRRSL
NTLAHSLNKHYCLAMVDIDHFKKFNDTYGHDVGDQVLQLVAKKLSKVEGGGKVFRYGGEEFTIVFTNKNIEAVLPLLEEI
RRKISQYNIVLRNQRRKNQSKLNRDEGHKTNPVVNITISIGVAEQHGETSFENTLKRADKALYKAKNNGRNQVFA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=205, Percent_Identity=35.609756097561, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1787262, Length=201, Percent_Identity=33.8308457711443, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1786584, Length=242, Percent_Identity=28.5123966942149, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787056, Length=174, Percent_Identity=33.9080459770115, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI145693134, Length=173, Percent_Identity=34.6820809248555, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1787816, Length=172, Percent_Identity=34.8837209302326, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87082007, Length=183, Percent_Identity=30.6010928961749, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1787802, Length=197, Percent_Identity=27.4111675126904, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788085, Length=179, Percent_Identity=28.4916201117318, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI87081977, Length=179, Percent_Identity=30.7262569832402, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788956, Length=169, Percent_Identity=33.1360946745562, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1788381, Length=176, Percent_Identity=26.7045454545455, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787541, Length=175, Percent_Identity=29.1428571428571, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 44883; Mature: 44752

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVLERSLRYLFIPIVITFLYIVITQHLSTIWQGWLPKINELPYFLLGISAVLALLFNCW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHH
RISYLSLLLLGYYYFESSPALLPELALLSQEQVILTGTLIITFFATFKDRALFSIYFFKT
HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLAIGLCVILTLGWSAVITHLSSVDAGLLPNTLKLLTSLYAPIGISCIVLCIFTIWRATG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VDSAIMVTLFIWLFHFYLPDELPLSILLTILALAYLTSILVRSHNLAYRDELTGLASRRS
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LNTLAHSLNKHYCLAMVDIDHFKKFNDTYGHDVGDQVLQLVAKKLSKVEGGGKVFRYGGE
HHHHHHHCCCCEEEEEEEHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCC
EFTIVFTNKNIEAVLPLLEEIRRKISQYNIVLRNQRRKNQSKLNRDEGHKTNPVVNITIS
EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEE
IGVAEQHGETSFENTLKRADKALYKAKNNGRNQVFA
EEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
PVLERSLRYLFIPIVITFLYIVITQHLSTIWQGWLPKINELPYFLLGISAVLALLFNCW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHH
RISYLSLLLLGYYYFESSPALLPELALLSQEQVILTGTLIITFFATFKDRALFSIYFFKT
HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLAIGLCVILTLGWSAVITHLSSVDAGLLPNTLKLLTSLYAPIGISCIVLCIFTIWRATG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VDSAIMVTLFIWLFHFYLPDELPLSILLTILALAYLTSILVRSHNLAYRDELTGLASRRS
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LNTLAHSLNKHYCLAMVDIDHFKKFNDTYGHDVGDQVLQLVAKKLSKVEGGGKVFRYGGE
HHHHHHHCCCCEEEEEEEHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCC
EFTIVFTNKNIEAVLPLLEEIRRKISQYNIVLRNQRRKNQSKLNRDEGHKTNPVVNITIS
EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEE
IGVAEQHGETSFENTLKRADKALYKAKNNGRNQVFA
EEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]