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The map label for this gene is nadB [C]

Identifier: 157963750

GI number: 157963750

Start: 4787494

End: 4789014

Strand: Reverse

Name: nadB [C]

Synonym: Spea_3939

Alternate gene names: 157963750

Gene position: 4789014-4787494 (Counterclockwise)

Preceding gene: 157963752

Following gene: 157963749

Centisome position: 92.55

GC content: 47.73

Gene sequence:

>1521_bases
ATGAGCAATAAAGATCTGCTAGGACGCCGTAATTTCATTAAAGGAATTGGCGCAGCTGCAGGGGTGGCAATCGCCGCACC
AGCTATGGCCGTTTCTGAAAGTGCAAATGGCGTTAAATGGGACAAAGAAGTTGAAGTCCTAATTATCGGTTCAGGTTTTG
CTGGATTGGCTGCTGCAATTGAAGCGACACGCAAAGGCGCAAAAGACGTTCATATCTTTGAAAAAATGTCTTACTTTGGT
GGCAACTCAGCCATTAACGGTGGCCTGTTTGCGGCTCCTGATACGCCAATGCAAAAGCAAGAGGGTGTTAAGGACTCTGT
CGCCACTATGGTTGCCGATCAGCTAGCGGCAGGCCGTGGTATTGCCGATGAGGCGCTACTTCGCCATGTTGCTGAGCACG
CTGTCGAAGCATTGCAGATGACTTTAGATGCTGGCTCTGAATATCACCCTTACCTACAACAACTTGGTGGCCACTCAGTT
GCGCGTACTTATCAAACTACAGTGAGCTGTGGTGCCGGTATTACTCAGCCGTTACTGCAAGAATGTCGCAAAATAGGCGT
TCACACCCATAACCGCGCTAAGTTCGACGGCTTCATCTTAGATGAAAAAGGTGGCGTAGTTGGCGTTAAAATGCGTGAAG
GCTATTACTTCGACAAGCCTGAATCTGGCGAATTAGTACGTATTAAAGCTAAGCGCGGCGTGATTATGGCGACAGGTGGT
TTTGCGCAAAACGTTAATATGCGTATGGCTCAAGATCCAACCCTAACAGCTGAAGTAGGTTGTACCAATGCACCAGGCGC
TACTGGTGAAGGTATGTTTGAAATGTTCCGTTTAGGTGCGGTTCCTGTCCACCTAGCACATCTCCAGTCTGGCCCTTGGG
CATCACCTGATGAAGGTGGTTTTGGTTATGTGTCTAACTACTCTATCTACAACTTCCCGCATTCAATCGCGATTGACCGT
TTAAGCGGTAAGCGTTTCATGAACGAAATCGCTGATCGTAAGACCCGTGCCGATGCTGAGTTGAACTGCCGTGATGCACA
AGGTAATCCATTACCTCCAATTCTTATCACCAGTTATGAAGACTCGAAAAAGCACCCAAATACTAAGAAAGTGCTTAAGT
ACAATGTGGGTTGGAAGTTTGACTCAATTGAAGAGTTAGCCAAGCACTTTGAAGTGCCAGTGGCGCCACTTAAGCAGCAA
ATTGCTGAATATAACGAATACGTTAAAACGCAGAACGACCCTCAGTTTGGTAAAAACATGACCGAAGCTAAGGGCAAGTA
CATCAAGGCGCCATTTACAGTGGTTCGCTTGTGGCCAAAAGTACATTACTGCCAAGGCGGTGTGCAGATCAATACTAAAG
CCGAAGTGAAAGACAGCCTAACGGGTCAGTCAATTCCTGGTCTGTACGCAGCGGGTGAAGTATGTGGTGGTATTCACGGC
GTTAGCCGCTTAGGTAGCTGCTCTATTCCTGAGTGTATGGTGATGGGCATGACCGCAGCCCGCACTATGATGCAAGCATA
A

Upstream 100 bases:

>100_bases
GTTTTATTGTATCTAGTAAATAGCTGCTTAACTCCCGTTTTGGAATCGGTTCCAGTCTTATCATTCTTGCGTCTAATAAA
AACTAATAGGGTGATGACAG

Downstream 100 bases:

>100_bases
GCTAACTGGCCTACGAGAGGACTGACAAATGAAAAAATGTAAATTGATGCTTGGCCTAGTCTTAGCCGGATTAGTTAGCT
TGTCTGCACAAGCAATTGAA

Product: flavocytochrome c

Products: NA

Alternate protein names: Flavocytochrome c; FL cyt [H]

Number of amino acids: Translated: 506; Mature: 505

Protein sequence:

>506_residues
MSNKDLLGRRNFIKGIGAAAGVAIAAPAMAVSESANGVKWDKEVEVLIIGSGFAGLAAAIEATRKGAKDVHIFEKMSYFG
GNSAINGGLFAAPDTPMQKQEGVKDSVATMVADQLAAGRGIADEALLRHVAEHAVEALQMTLDAGSEYHPYLQQLGGHSV
ARTYQTTVSCGAGITQPLLQECRKIGVHTHNRAKFDGFILDEKGGVVGVKMREGYYFDKPESGELVRIKAKRGVIMATGG
FAQNVNMRMAQDPTLTAEVGCTNAPGATGEGMFEMFRLGAVPVHLAHLQSGPWASPDEGGFGYVSNYSIYNFPHSIAIDR
LSGKRFMNEIADRKTRADAELNCRDAQGNPLPPILITSYEDSKKHPNTKKVLKYNVGWKFDSIEELAKHFEVPVAPLKQQ
IAEYNEYVKTQNDPQFGKNMTEAKGKYIKAPFTVVRLWPKVHYCQGGVQINTKAEVKDSLTGQSIPGLYAAGEVCGGIHG
VSRLGSCSIPECMVMGMTAARTMMQA

Sequences:

>Translated_506_residues
MSNKDLLGRRNFIKGIGAAAGVAIAAPAMAVSESANGVKWDKEVEVLIIGSGFAGLAAAIEATRKGAKDVHIFEKMSYFG
GNSAINGGLFAAPDTPMQKQEGVKDSVATMVADQLAAGRGIADEALLRHVAEHAVEALQMTLDAGSEYHPYLQQLGGHSV
ARTYQTTVSCGAGITQPLLQECRKIGVHTHNRAKFDGFILDEKGGVVGVKMREGYYFDKPESGELVRIKAKRGVIMATGG
FAQNVNMRMAQDPTLTAEVGCTNAPGATGEGMFEMFRLGAVPVHLAHLQSGPWASPDEGGFGYVSNYSIYNFPHSIAIDR
LSGKRFMNEIADRKTRADAELNCRDAQGNPLPPILITSYEDSKKHPNTKKVLKYNVGWKFDSIEELAKHFEVPVAPLKQQ
IAEYNEYVKTQNDPQFGKNMTEAKGKYIKAPFTVVRLWPKVHYCQGGVQINTKAEVKDSLTGQSIPGLYAAGEVCGGIHG
VSRLGSCSIPECMVMGMTAARTMMQA
>Mature_505_residues
SNKDLLGRRNFIKGIGAAAGVAIAAPAMAVSESANGVKWDKEVEVLIIGSGFAGLAAAIEATRKGAKDVHIFEKMSYFGG
NSAINGGLFAAPDTPMQKQEGVKDSVATMVADQLAAGRGIADEALLRHVAEHAVEALQMTLDAGSEYHPYLQQLGGHSVA
RTYQTTVSCGAGITQPLLQECRKIGVHTHNRAKFDGFILDEKGGVVGVKMREGYYFDKPESGELVRIKAKRGVIMATGGF
AQNVNMRMAQDPTLTAEVGCTNAPGATGEGMFEMFRLGAVPVHLAHLQSGPWASPDEGGFGYVSNYSIYNFPHSIAIDRL
SGKRFMNEIADRKTRADAELNCRDAQGNPLPPILITSYEDSKKHPNTKKVLKYNVGWKFDSIEELAKHFEVPVAPLKQQI
AEYNEYVKTQNDPQFGKNMTEAKGKYIKAPFTVVRLWPKVHYCQGGVQINTKAEVKDSLTGQSIPGLYAAGEVCGGIHGV
SRLGSCSIPECMVMGMTAARTMMQA

Specific function: Catalyzes fumarate reduction using artificial electron donors such as methyl viologen. The physiological reductant is unknown, but evidence indicates that flavocytochrome c participates in electron transfer from formate to fumarate and possibly also to tr

COG id: COG1053

COG function: function code C; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cytochrome c domain [H]

Homologues:

Organism=Caenorhabditis elegans, GI71986328, Length=479, Percent_Identity=27.7661795407098, Blast_Score=106, Evalue=3e-23,
Organism=Saccharomyces cerevisiae, GI6320788, Length=491, Percent_Identity=29.5315682281059, Blast_Score=144, Evalue=4e-35,
Organism=Saccharomyces cerevisiae, GI6322511, Length=479, Percent_Identity=27.7661795407098, Blast_Score=130, Evalue=3e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003953
- InterPro:   IPR013027
- InterPro:   IPR010960
- InterPro:   IPR011031
- InterPro:   IPR012286 [H]

Pfam domain/function: PF00890 FAD_binding_2 [H]

EC number: =1.3.99.1 [H]

Molecular weight: Translated: 54549; Mature: 54418

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKDLLGRRNFIKGIGAAAGVAIAAPAMAVSESANGVKWDKEVEVLIIGSGFAGLAAAI
CCCCCCCCHHHHHHHCCHHHHHHHHCCHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHH
EATRKGAKDVHIFEKMSYFGGNSAINGGLFAAPDTPMQKQEGVKDSVATMVADQLAAGRG
HHHHCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHCCHHHHHHHHHHHHHHCCCC
IADEALLRHVAEHAVEALQMTLDAGSEYHPYLQQLGGHSVARTYQTTVSCGAGITQPLLQ
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHH
ECRKIGVHTHNRAKFDGFILDEKGGVVGVKMREGYYFDKPESGELVRIKAKRGVIMATGG
HHHHCCCCCCCCCCCCCEEEECCCCEEEEEEECCEECCCCCCCCEEEEEECCCEEEEECC
FAQNVNMRMAQDPTLTAEVGCTNAPGATGEGMFEMFRLGAVPVHLAHLQSGPWASPDEGG
CCCCCCEEECCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
FGYVSNYSIYNFPHSIAIDRLSGKRFMNEIADRKTRADAELNCRDAQGNPLPPILITSYE
CCEEECCEEECCCCHHEEEHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEECCC
DSKKHPNTKKVLKYNVGWKFDSIEELAKHFEVPVAPLKQQIAEYNEYVKTQNDPQFGKNM
CCCCCCCCHHEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHCCCH
TEAKGKYIKAPFTVVRLWPKVHYCQGGVQINTKAEVKDSLTGQSIPGLYAAGEVCGGIHG
HHHCCCEEECCCEEEECCCHHEEECCCEEECCHHHHHHCCCCCCCCCHHHHHHHHHHHHH
VSRLGSCSIPECMVMGMTAARTMMQA
HHHCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SNKDLLGRRNFIKGIGAAAGVAIAAPAMAVSESANGVKWDKEVEVLIIGSGFAGLAAAI
CCCCCCCHHHHHHHCCHHHHHHHHCCHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHH
EATRKGAKDVHIFEKMSYFGGNSAINGGLFAAPDTPMQKQEGVKDSVATMVADQLAAGRG
HHHHCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHCCHHHHHHHHHHHHHHCCCC
IADEALLRHVAEHAVEALQMTLDAGSEYHPYLQQLGGHSVARTYQTTVSCGAGITQPLLQ
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHH
ECRKIGVHTHNRAKFDGFILDEKGGVVGVKMREGYYFDKPESGELVRIKAKRGVIMATGG
HHHHCCCCCCCCCCCCCEEEECCCCEEEEEEECCEECCCCCCCCEEEEEECCCEEEEECC
FAQNVNMRMAQDPTLTAEVGCTNAPGATGEGMFEMFRLGAVPVHLAHLQSGPWASPDEGG
CCCCCCEEECCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
FGYVSNYSIYNFPHSIAIDRLSGKRFMNEIADRKTRADAELNCRDAQGNPLPPILITSYE
CCEEECCEEECCCCHHEEEHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEECCC
DSKKHPNTKKVLKYNVGWKFDSIEELAKHFEVPVAPLKQQIAEYNEYVKTQNDPQFGKNM
CCCCCCCCHHEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHCCCH
TEAKGKYIKAPFTVVRLWPKVHYCQGGVQINTKAEVKDSLTGQSIPGLYAAGEVCGGIHG
HHHCCCEEECCCEEEECCCHHEEECCCEEECCHHHHHHCCCCCCCCCHHHHHHHHHHHHH
VSRLGSCSIPECMVMGMTAARTMMQA
HHHCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11425747; 12368813; 10581551 [H]