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The map label for this gene is rraB [H]

Identifier: 157963524

GI number: 157963524

Start: 4518384

End: 4518797

Strand: Reverse

Name: rraB [H]

Synonym: Spea_3712

Alternate gene names: 157963524

Gene position: 4518797-4518384 (Counterclockwise)

Preceding gene: 157963525

Following gene: 157963521

Centisome position: 87.33

GC content: 43.48

Gene sequence:

>414_bases
ATGTCTATTGAACGTCAGTTAAACGAACAGAAACAAGAAAACCGTGAGATCGTTGAAGCGATTCTTGCCGATGGTTCATT
ACCGGATGCCGAGTACACAATCGAGCATCACTTTTCATCGACCAACTTCGATCGTTTAGAAAAAGCGGCTGTCGATGCAT
TCAAGCTAGGCTATGAAGTTAATGACGCCGAAGAGATGGAGCTAGAAGATGGCTCTGTGATCTACTGCTTCGATGCAGTT
GCAAGTCATGAACTAGAGACTGATCTTCTAGATGAAGCTTGCGAGAAAATGATCACTTTAGCGGCTAAGCAGAAGATTGA
TTATGACGGTTGGGGCACTTATTTCATCGACGAAAATGGCGAAGAAGTCAGAGACGAAGATGAAGACGATTATGAAGATG
AAGAACTGCACTAG

Upstream 100 bases:

>100_bases
ATACTTTGATGTCGGAAAAGTTGTCACAGTTGAACCAAGAAGCTTCTGCATTAATGACTAAAGCGGTATAATCGATCGCG
AAATTTTTGAGGAGTCTTCG

Downstream 100 bases:

>100_bases
TTTTCGCTCATAAGCTTACCAACAAAAATGCCCATCTAGATGATGGGCATTTTTGTTTCTAGCGTCTTCTATAGCCCATG
AGTAATTTATATTGATTGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 136

Protein sequence:

>137_residues
MSIERQLNEQKQENREIVEAILADGSLPDAEYTIEHHFSSTNFDRLEKAAVDAFKLGYEVNDAEEMELEDGSVIYCFDAV
ASHELETDLLDEACEKMITLAAKQKIDYDGWGTYFIDENGEEVRDEDEDDYEDEELH

Sequences:

>Translated_137_residues
MSIERQLNEQKQENREIVEAILADGSLPDAEYTIEHHFSSTNFDRLEKAAVDAFKLGYEVNDAEEMELEDGSVIYCFDAV
ASHELETDLLDEACEKMITLAAKQKIDYDGWGTYFIDENGEEVRDEDEDDYEDEELH
>Mature_136_residues
SIERQLNEQKQENREIVEAILADGSLPDAEYTIEHHFSSTNFDRLEKAAVDAFKLGYEVNDAEEMELEDGSVIYCFDAVA
SHELETDLLDEACEKMITLAAKQKIDYDGWGTYFIDENGEEVRDEDEDDYEDEELH

Specific function: Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome [H]

COG id: COG3076

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraB family [H]

Homologues:

Organism=Escherichia coli, GI1790704, Length=120, Percent_Identity=55, Blast_Score=137, Evalue=4e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009671
- InterPro:   IPR016716 [H]

Pfam domain/function: PF06877 DUF1260 [H]

EC number: NA

Molecular weight: Translated: 15794; Mature: 15663

Theoretical pI: Translated: 3.73; Mature: 3.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIERQLNEQKQENREIVEAILADGSLPDAEYTIEHHFSSTNFDRLEKAAVDAFKLGYEV
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
NDAEEMELEDGSVIYCFDAVASHELETDLLDEACEKMITLAAKQKIDYDGWGTYFIDENG
CCCCCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
EEVRDEDEDDYEDEELH
CCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SIERQLNEQKQENREIVEAILADGSLPDAEYTIEHHFSSTNFDRLEKAAVDAFKLGYEV
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
NDAEEMELEDGSVIYCFDAVASHELETDLLDEACEKMITLAAKQKIDYDGWGTYFIDENG
CCCCCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
EEVRDEDEDDYEDEELH
CCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA