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The map label for this gene is yiaD [H]

Identifier: 157963436

GI number: 157963436

Start: 4413299

End: 4413973

Strand: Reverse

Name: yiaD [H]

Synonym: Spea_3624

Alternate gene names: 157963436

Gene position: 4413973-4413299 (Counterclockwise)

Preceding gene: 157963438

Following gene: 157963435

Centisome position: 85.3

GC content: 50.37

Gene sequence:

>675_bases
ATGAGCGTTAAACCTAGTTCTATTCTTGCTGGTGGCCTTATCGCCGCCATGTTGGTGTCTGGTTGCCAGACAACCAATCC
TTATACCAACGAATCTCAAAATGGCAAAGCGACTAACGGTGCCTTGATTGGAGCAATCGCTGGCGCGGCGATTGGCGTTG
CGTCATCGAGTAAAAGTGACCGCGCTAAAGGCGCCTTGATCGGTGCTGCATCTGGTGCGGCATTAGGTGGTGGTATTGGC
TATTACATGGACGTGCAGGAAGCCGAGCTTCGTAAGCAGCTGCAATCATCAGGTGTGAGTGTGACTCGCAGTGGCGACAA
TATTATTTTGAACATGCCAAATGATGTGACTTTTGGTGTGGATCAAACCGACCTGAGTCAGCGTGCTAAGCAAGTGTTAA
ACAGTGTGGTACTGGTAGCGCTTGAATATGATGAGACTAAGCTAAACGTGATGGGTCATACCGATAGCTCAGGTGCGGAA
TCGTATAACCTAAGGCTGTCGCAAGTACGTGCCAGTGAAGTGGCAAACTACCTAACCCGCCAGAAGGTACCAGCTCAGCG
TGTGGCTTCTCATGGTATGGGCGAGTCCAAGCCGATCGCCTCCAATGAAACCAAGCAGGGCCGAGCCGAAAATCGTCGTG
TAGAGATTATCTTAAGCCCAATGCCAAACGCTTAA

Upstream 100 bases:

>100_bases
GCTTGACCATTGTCTAATTCACTGTGGTTTATATACTGCTAAAAAAATACAACTTATTAGTCGCTTTTGTGACAGGCAAA
AGCAGTTAGGAGCGGTACAT

Downstream 100 bases:

>100_bases
CTGTTTAACTTGCGTGAGTAATGAAAGCCACCTTCTACATAAGGTGGCTTTTTATTTTCAGCTCTAAATACGCGACTGCA
GGTAGTGATTGCTATGCTTT

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MSVKPSSILAGGLIAAMLVSGCQTTNPYTNESQNGKATNGALIGAIAGAAIGVASSSKSDRAKGALIGAASGAALGGGIG
YYMDVQEAELRKQLQSSGVSVTRSGDNIILNMPNDVTFGVDQTDLSQRAKQVLNSVVLVALEYDETKLNVMGHTDSSGAE
SYNLRLSQVRASEVANYLTRQKVPAQRVASHGMGESKPIASNETKQGRAENRRVEIILSPMPNA

Sequences:

>Translated_224_residues
MSVKPSSILAGGLIAAMLVSGCQTTNPYTNESQNGKATNGALIGAIAGAAIGVASSSKSDRAKGALIGAASGAALGGGIG
YYMDVQEAELRKQLQSSGVSVTRSGDNIILNMPNDVTFGVDQTDLSQRAKQVLNSVVLVALEYDETKLNVMGHTDSSGAE
SYNLRLSQVRASEVANYLTRQKVPAQRVASHGMGESKPIASNETKQGRAENRRVEIILSPMPNA
>Mature_223_residues
SVKPSSILAGGLIAAMLVSGCQTTNPYTNESQNGKATNGALIGAIAGAAIGVASSSKSDRAKGALIGAASGAALGGGIGY
YMDVQEAELRKQLQSSGVSVTRSGDNIILNMPNDVTFGVDQTDLSQRAKQVLNSVVLVALEYDETKLNVMGHTDSSGAES
YNLRLSQVRASEVANYLTRQKVPAQRVASHGMGESKPIASNETKQGRAENRRVEIILSPMPNA

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=214, Percent_Identity=56.5420560747664, Blast_Score=198, Evalue=3e-52,
Organism=Escherichia coli, GI1788957, Length=127, Percent_Identity=33.0708661417323, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1787191, Length=118, Percent_Identity=30.5084745762712, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 23296; Mature: 23164

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVKPSSILAGGLIAAMLVSGCQTTNPYTNESQNGKATNGALIGAIAGAAIGVASSSKSD
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
RAKGALIGAASGAALGGGIGYYMDVQEAELRKQLQSSGVSVTRSGDNIILNMPNDVTFGV
CCCEEEEECCCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEECCCEEEEECCCCEEECC
DQTDLSQRAKQVLNSVVLVALEYDETKLNVMGHTDSSGAESYNLRLSQVRASEVANYLTR
CHHHHHHHHHHHHHHHEEEEEECCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
QKVPAQRVASHGMGESKPIASNETKQGRAENRRVEIILSPMPNA
CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
>Mature Secondary Structure 
SVKPSSILAGGLIAAMLVSGCQTTNPYTNESQNGKATNGALIGAIAGAAIGVASSSKSD
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
RAKGALIGAASGAALGGGIGYYMDVQEAELRKQLQSSGVSVTRSGDNIILNMPNDVTFGV
CCCEEEEECCCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEECCCEEEEECCCCEEECC
DQTDLSQRAKQVLNSVVLVALEYDETKLNVMGHTDSSGAESYNLRLSQVRASEVANYLTR
CHHHHHHHHHHHHHHHEEEEEECCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
QKVPAQRVASHGMGESKPIASNETKQGRAENRRVEIILSPMPNA
CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]