| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is btuB [H]
Identifier: 157963238
GI number: 157963238
Start: 4182920
End: 4185754
Strand: Reverse
Name: btuB [H]
Synonym: Spea_3424
Alternate gene names: 157963238
Gene position: 4185754-4182920 (Counterclockwise)
Preceding gene: 157963239
Following gene: 157963237
Centisome position: 80.89
GC content: 44.2
Gene sequence:
>2835_bases ATGACGTCAATAAGCCGTTTATCTAAAGCAGTAAAGGTCGCGCTTTTAGCAACGACAAGTGCAGCATTAATGACAAGTGC CGGAGCCTATGCTGAAGAGCAAGAGGGCGATGGTATTGAAAGAATCGAGGTGACAGGCTCGAAAATTAAGCGAATCGGTG AACTATCTCCAACTCCTGTAACTGTAATCACAGGTGCAGATATGATGGATATGGGTATCACTAACGTGGCTGATATCTTG AATAAACTTCCATCATCAACAGTTGGTATCTCTCCAGAGACTTCTAACAACACTATTTTTGCTAACGGTCTAAACCAAAC AAACCTACGTGGCTTAGGTACCGACCGTACGCTAGTTTTGGTCAACGGTCGCCGTTTTGTTGCGGGCTCTAATGGTGACT CTGCTGTTGACTTGAACACTATTCCAACGGCAATGGTTTCTCGAATTGAAGTGATTACTGGTGGTGCATCAGCGGTATAT GGTTCTGATGCGATTGCAGGTGTTATTAACATTATCACTCGAACCGATGTTCAGGGTGTTGAACTTGACGCGTCTTATAT TCAGCCTGAGCAAAGCGGTGGTGAAGAGAGTCAGTTCTCGTTAACGGCGGGTGGTAACTTCTTAGATGATAAATTGTCGA CTGTATTTAACTTTACCTATGCAGAGCAGCAAGAGTTGCGCAATACCGATAGAGACTTCTTAGATAATCCTGTCACAAGT ATTTATAACCCTGATACTTCAGAAGGTGCGCCTGCACGTATTCCTTATGAGGGTCGAAAGCCACTGTCTTGGATCAACGA GGCGGGTACTTTCTTTGCTGGTGACGGCGGCCAATATACCTTCGGCTCAGATGGTGCCATGAGAGAGTTTGATTATGGTG AAGGCCTAATCCCAGGTCCAGGTACTAACGGCAACTATTGTGGCCCAAGCTGTGAAGGTTATGATCCAGTTGATTACGGT TTAGTGCGTACGCCGTTAGAGCGTATGGTATTTACCTTAAATACTGATTTCGAGATTAATGATAACCATAAGGTTTTCAC TGAAATTACTTATGTAGATTACACATCTAACGGTGAGAGCACGCCGGTATTCCATACTTGGAATCCGATTATGGCTGATA ATGCTTTTCTTCCACAAGAAACGCAGGACCTAATGGCTGATACAGATATGGAATACTTCAATCTTTATCGTATCGATGGT GAGTTTGGTAACCGTACTTATAACCAAGACCGTGAGACAATGCGTTTCTTAGTCGGGCTTGAAGGTTCAATTAGCGATGA CTGGGATTACTCTTTCCATGCTCAACGTGGTCAGTTAAAAGAAACCACATTATGGAAAGGCCAGATCTGGGATGAGCGTT ATGAGCAAGCAAAAGATGCCATCTTAGTTGACGGTGAAATCGTTTGTCGTGATACAGATGCACGTGCAGCAGGATGTGTA CCAATGAACTTACTTGGTGTAAACCAAGCAAGTCAAGAGTCAATCGACTGGGTTGGCACTAGTGCTGGCCAAACGGCTAA GACAACACAAACAAGTGCTGGTTTAGTGGTTAGTGGTGCACTGTTTGATCTGCCTGCAGGTTATGTCAGTGCGGCATTCA GTGCCGACTACCGTAAAGAAGAGTCTGAAACAAATCCAGATCAAGCGCTAATCGATGGTACTATTTTTGGTAACAGCGCT AACCCTATGAAGGGTGAGTATGATGTTACTGAATTTGCAGCTGAATTTAATGTTCCATTACTTTCTGATATGTTCCTTGC CCACGATTTAGCTCTAGACTTAGCTTATCGCTGGATGGATTACAGCACAGCGGGTCAAGATGATGCTTGGAAGGTCGGCC TAAACTGGGCGCCAATCGAAGATCTTCGTCTACGTGCAACGCGTTCAAAGTCAGTTCGAGCGCCAAATATTGGTGAGCTA TTTAGTCCTGCAGGCCAGACATTCGAAAGCTTCACCGATGTGTGTGACAAGATCAACGTTGAACTAGGTCCAAATGACAA CCGTAAGAAAAACTGTCAAGCATCAGGCTTGCCAGAAGGTTGGAACCCATCAGATTCTTGGTACTTGAGTAACCATCCTG GAAGCAATGCAGGTAATCCAGACCTAAAAGCTGAGACTTCAAACGATTACACTGTTGGTGCAGTTTATACCCCTAGCTAC CTAGATGGATTCTCTATCACAGTTGATTACTGGGCATTTGAGATCTCTGATGCGATTCAATACATAGGTGTCGATACAGC CGTACGTTATTGCTATGACTCTGAGTCATTAGATAATGTCTATTGTGATCGATTTACTCGTGATCCAGTATCAGGAGATA TCGTCGATTTCGTACAGAGCCCTGTAAACTCAGCATCGTTTGATGTGAAAGGTCTAGATATCGAAGGTCAGTACGATATT CCAACTGATAGCTTTGGTGACTTCCGCGTTCATGTTATTGCTACTTACTTAGAGCAATGGCAAACCAACCCAACAGGCTT TGCTGAAGACTTACAAGTTGATGTGGGTGAGTACACAGATCCACGTTGGAAGGCGATGTTTAGCTTAGGCTGGAAGTATG ACGCACTAAGTTTAGAAGCAAGATCGAACTACCGTCATTCAGCCGTTGCTAGCAACGACTGGAAGCCAGAGAACAACAAC TATAACGATATTCCATCGCATACAGTTTGGGACTTCACTGGTTCTTATGCCTTTAATGATGATCTATCTTTACGCTTCGG TGTCTTGAATGCCTTTGATATTGAGCCACCACGTAACCCATATGTTTACGATGGCGCAGGGTACTATGACACCACGGGTC GTGCATTCTTCCTAGGTGCAAACTATAAGCTTTAA
Upstream 100 bases:
>100_bases TTTTGTTGCTTAGCTAAGGGTAGCAACCTTGGCTTAAAAATTAGAAAACTCAACAAATTTGAATCAATTGAGTTCGCAAT TAACAAAGGGAATGTTAAAT
Downstream 100 bases:
>100_bases TATTAAATAATTAGTGAGTCATATCGTGTTCTAATGAACATTGATATTGATAAAAGCCAGTAGCTTATCGCTACTGGCTT TTTTATTATCTAAAGTGGGC
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 944; Mature: 943
Protein sequence:
>944_residues MTSISRLSKAVKVALLATTSAALMTSAGAYAEEQEGDGIERIEVTGSKIKRIGELSPTPVTVITGADMMDMGITNVADIL NKLPSSTVGISPETSNNTIFANGLNQTNLRGLGTDRTLVLVNGRRFVAGSNGDSAVDLNTIPTAMVSRIEVITGGASAVY GSDAIAGVINIITRTDVQGVELDASYIQPEQSGGEESQFSLTAGGNFLDDKLSTVFNFTYAEQQELRNTDRDFLDNPVTS IYNPDTSEGAPARIPYEGRKPLSWINEAGTFFAGDGGQYTFGSDGAMREFDYGEGLIPGPGTNGNYCGPSCEGYDPVDYG LVRTPLERMVFTLNTDFEINDNHKVFTEITYVDYTSNGESTPVFHTWNPIMADNAFLPQETQDLMADTDMEYFNLYRIDG EFGNRTYNQDRETMRFLVGLEGSISDDWDYSFHAQRGQLKETTLWKGQIWDERYEQAKDAILVDGEIVCRDTDARAAGCV PMNLLGVNQASQESIDWVGTSAGQTAKTTQTSAGLVVSGALFDLPAGYVSAAFSADYRKEESETNPDQALIDGTIFGNSA NPMKGEYDVTEFAAEFNVPLLSDMFLAHDLALDLAYRWMDYSTAGQDDAWKVGLNWAPIEDLRLRATRSKSVRAPNIGEL FSPAGQTFESFTDVCDKINVELGPNDNRKKNCQASGLPEGWNPSDSWYLSNHPGSNAGNPDLKAETSNDYTVGAVYTPSY LDGFSITVDYWAFEISDAIQYIGVDTAVRYCYDSESLDNVYCDRFTRDPVSGDIVDFVQSPVNSASFDVKGLDIEGQYDI PTDSFGDFRVHVIATYLEQWQTNPTGFAEDLQVDVGEYTDPRWKAMFSLGWKYDALSLEARSNYRHSAVASNDWKPENNN YNDIPSHTVWDFTGSYAFNDDLSLRFGVLNAFDIEPPRNPYVYDGAGYYDTTGRAFFLGANYKL
Sequences:
>Translated_944_residues MTSISRLSKAVKVALLATTSAALMTSAGAYAEEQEGDGIERIEVTGSKIKRIGELSPTPVTVITGADMMDMGITNVADIL NKLPSSTVGISPETSNNTIFANGLNQTNLRGLGTDRTLVLVNGRRFVAGSNGDSAVDLNTIPTAMVSRIEVITGGASAVY GSDAIAGVINIITRTDVQGVELDASYIQPEQSGGEESQFSLTAGGNFLDDKLSTVFNFTYAEQQELRNTDRDFLDNPVTS IYNPDTSEGAPARIPYEGRKPLSWINEAGTFFAGDGGQYTFGSDGAMREFDYGEGLIPGPGTNGNYCGPSCEGYDPVDYG LVRTPLERMVFTLNTDFEINDNHKVFTEITYVDYTSNGESTPVFHTWNPIMADNAFLPQETQDLMADTDMEYFNLYRIDG EFGNRTYNQDRETMRFLVGLEGSISDDWDYSFHAQRGQLKETTLWKGQIWDERYEQAKDAILVDGEIVCRDTDARAAGCV PMNLLGVNQASQESIDWVGTSAGQTAKTTQTSAGLVVSGALFDLPAGYVSAAFSADYRKEESETNPDQALIDGTIFGNSA NPMKGEYDVTEFAAEFNVPLLSDMFLAHDLALDLAYRWMDYSTAGQDDAWKVGLNWAPIEDLRLRATRSKSVRAPNIGEL FSPAGQTFESFTDVCDKINVELGPNDNRKKNCQASGLPEGWNPSDSWYLSNHPGSNAGNPDLKAETSNDYTVGAVYTPSY LDGFSITVDYWAFEISDAIQYIGVDTAVRYCYDSESLDNVYCDRFTRDPVSGDIVDFVQSPVNSASFDVKGLDIEGQYDI PTDSFGDFRVHVIATYLEQWQTNPTGFAEDLQVDVGEYTDPRWKAMFSLGWKYDALSLEARSNYRHSAVASNDWKPENNN YNDIPSHTVWDFTGSYAFNDDLSLRFGVLNAFDIEPPRNPYVYDGAGYYDTTGRAFFLGANYKL >Mature_943_residues TSISRLSKAVKVALLATTSAALMTSAGAYAEEQEGDGIERIEVTGSKIKRIGELSPTPVTVITGADMMDMGITNVADILN KLPSSTVGISPETSNNTIFANGLNQTNLRGLGTDRTLVLVNGRRFVAGSNGDSAVDLNTIPTAMVSRIEVITGGASAVYG SDAIAGVINIITRTDVQGVELDASYIQPEQSGGEESQFSLTAGGNFLDDKLSTVFNFTYAEQQELRNTDRDFLDNPVTSI YNPDTSEGAPARIPYEGRKPLSWINEAGTFFAGDGGQYTFGSDGAMREFDYGEGLIPGPGTNGNYCGPSCEGYDPVDYGL VRTPLERMVFTLNTDFEINDNHKVFTEITYVDYTSNGESTPVFHTWNPIMADNAFLPQETQDLMADTDMEYFNLYRIDGE FGNRTYNQDRETMRFLVGLEGSISDDWDYSFHAQRGQLKETTLWKGQIWDERYEQAKDAILVDGEIVCRDTDARAAGCVP MNLLGVNQASQESIDWVGTSAGQTAKTTQTSAGLVVSGALFDLPAGYVSAAFSADYRKEESETNPDQALIDGTIFGNSAN PMKGEYDVTEFAAEFNVPLLSDMFLAHDLALDLAYRWMDYSTAGQDDAWKVGLNWAPIEDLRLRATRSKSVRAPNIGELF SPAGQTFESFTDVCDKINVELGPNDNRKKNCQASGLPEGWNPSDSWYLSNHPGSNAGNPDLKAETSNDYTVGAVYTPSYL DGFSITVDYWAFEISDAIQYIGVDTAVRYCYDSESLDNVYCDRFTRDPVSGDIVDFVQSPVNSASFDVKGLDIEGQYDIP TDSFGDFRVHVIATYLEQWQTNPTGFAEDLQVDVGEYTDPRWKAMFSLGWKYDALSLEARSNYRHSAVASNDWKPENNNY NDIPSHTVWDFTGSYAFNDDLSLRFGVLNAFDIEPPRNPYVYDGAGYYDTTGRAFFLGANYKL
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790405, Length=201, Percent_Identity=32.8358208955224, Blast_Score=85, Evalue=2e-17, Organism=Escherichia coli, GI1788478, Length=175, Percent_Identity=33.1428571428571, Blast_Score=80, Evalue=5e-16,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010101 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 103842; Mature: 103711
Theoretical pI: Translated: 4.04; Mature: 4.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSISRLSKAVKVALLATTSAALMTSAGAYAEEQEGDGIERIEVTGSKIKRIGELSPTPV CCCHHHHHHHHEEEEEEECHHHHHHCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCCCCE TVITGADMMDMGITNVADILNKLPSSTVGISPETSNNTIFANGLNQTNLRGLGTDRTLVL EEEECCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCEECCCCCEEEE VNGRRFVAGSNGDSAVDLNTIPTAMVSRIEVITGGASAVYGSDAIAGVINIITRTDVQGV ECCEEEEECCCCCCEEECCCCCHHHHHEEEEEECCCCEECCCHHHHHHHHHHHCCCCCCE ELDASYIQPEQSGGEESQFSLTAGGNFLDDKLSTVFNFTYAEQQELRNTDRDFLDNPVTS EECHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHCCCHHH IYNPDTSEGAPARIPYEGRKPLSWINEAGTFFAGDGGQYTFGSDGAMREFDYGEGLIPGP CCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEECCCCCEEECCCCCCEECCCCCCCCCCC GTNGNYCGPSCEGYDPVDYGLVRTPLERMVFTLNTDFEINDNHKVFTEITYVDYTSNGES CCCCCCCCCCCCCCCCCCCCHHHCCHHHEEEEECCCEEECCCCEEEEEEEEEEECCCCCC TPVFHTWNPIMADNAFLPQETQDLMADTDMEYFNLYRIDGEFGNRTYNQDRETMRFLVGL CCEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHCC EGSISDDWDYSFHAQRGQLKETTLWKGQIWDERYEQAKDAILVDGEIVCRDTDARAAGCV CCCCCCCCCCEEECCCCCCCCCEEECCCHHHHHHHHHCCEEEECCEEEEECCCCCCCCCC PMNLLGVNQASQESIDWVGTSAGQTAKTTQTSAGLVVSGALFDLPAGYVSAAFSADYRKE EEEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCEEEECHHHHCCCHHHHHHHHHHHHHC ESETNPDQALIDGTIFGNSANPMKGEYDVTEFAAEFNVPLLSDMFLAHDLALDLAYRWMD CCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC YSTAGQDDAWKVGLNWAPIEDLRLRATRSKSVRAPNIGELFSPAGQTFESFTDVCDKINV CCCCCCCCCEEECCCCCCHHHHHEEECCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHEEE ELGPNDNRKKNCQASGLPEGWNPSDSWYLSNHPGSNAGNPDLKAETSNDYTVGAVYTPSY EECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEECCCCEEEEEEECCCC LDGFSITVDYWAFEISDAIQYIGVDTAVRYCYDSESLDNVYCDRFTRDPVSGDIVDFVQS CCCEEEEEEEEEEEHHHHHHHHCHHHHHHEEECCCCCCHHHHHCCCCCCCCCHHHHHHHC PVNSASFDVKGLDIEGQYDIPTDSFGDFRVHVIATYLEQWQTNPTGFAEDLQVDVGEYTD CCCCCCCEEEEEEECCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCHHHHEEECCCCCC PRWKAMFSLGWKYDALSLEARSNYRHSAVASNDWKPENNNYNDIPSHTVWDFTGSYAFND HHHHHHHHCCCEECEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEECC DLSLRFGVLNAFDIEPPRNPYVYDGAGYYDTTGRAFFLGANYKL CCEEEEEEEEEEECCCCCCCEEECCCCEECCCCCEEEEECCCCC >Mature Secondary Structure TSISRLSKAVKVALLATTSAALMTSAGAYAEEQEGDGIERIEVTGSKIKRIGELSPTPV CCHHHHHHHHEEEEEEECHHHHHHCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCCCCE TVITGADMMDMGITNVADILNKLPSSTVGISPETSNNTIFANGLNQTNLRGLGTDRTLVL EEEECCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCEECCCCCEEEE VNGRRFVAGSNGDSAVDLNTIPTAMVSRIEVITGGASAVYGSDAIAGVINIITRTDVQGV ECCEEEEECCCCCCEEECCCCCHHHHHEEEEEECCCCEECCCHHHHHHHHHHHCCCCCCE ELDASYIQPEQSGGEESQFSLTAGGNFLDDKLSTVFNFTYAEQQELRNTDRDFLDNPVTS EECHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHCCCHHH IYNPDTSEGAPARIPYEGRKPLSWINEAGTFFAGDGGQYTFGSDGAMREFDYGEGLIPGP CCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEECCCCCEEECCCCCCEECCCCCCCCCCC GTNGNYCGPSCEGYDPVDYGLVRTPLERMVFTLNTDFEINDNHKVFTEITYVDYTSNGES CCCCCCCCCCCCCCCCCCCCHHHCCHHHEEEEECCCEEECCCCEEEEEEEEEEECCCCCC TPVFHTWNPIMADNAFLPQETQDLMADTDMEYFNLYRIDGEFGNRTYNQDRETMRFLVGL CCEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHCC EGSISDDWDYSFHAQRGQLKETTLWKGQIWDERYEQAKDAILVDGEIVCRDTDARAAGCV CCCCCCCCCCEEECCCCCCCCCEEECCCHHHHHHHHHCCEEEECCEEEEECCCCCCCCCC PMNLLGVNQASQESIDWVGTSAGQTAKTTQTSAGLVVSGALFDLPAGYVSAAFSADYRKE EEEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCEEEECHHHHCCCHHHHHHHHHHHHHC ESETNPDQALIDGTIFGNSANPMKGEYDVTEFAAEFNVPLLSDMFLAHDLALDLAYRWMD CCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC YSTAGQDDAWKVGLNWAPIEDLRLRATRSKSVRAPNIGELFSPAGQTFESFTDVCDKINV CCCCCCCCCEEECCCCCCHHHHHEEECCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHEEE ELGPNDNRKKNCQASGLPEGWNPSDSWYLSNHPGSNAGNPDLKAETSNDYTVGAVYTPSY EECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEECCCCEEEEEEECCCC LDGFSITVDYWAFEISDAIQYIGVDTAVRYCYDSESLDNVYCDRFTRDPVSGDIVDFVQS CCCEEEEEEEEEEEHHHHHHHHCHHHHHHEEECCCCCCHHHHHCCCCCCCCCHHHHHHHC PVNSASFDVKGLDIEGQYDIPTDSFGDFRVHVIATYLEQWQTNPTGFAEDLQVDVGEYTD CCCCCCCEEEEEEECCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCHHHHEEECCCCCC PRWKAMFSLGWKYDALSLEARSNYRHSAVASNDWKPENNNYNDIPSHTVWDFTGSYAFND HHHHHHHHCCCEECEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEECC DLSLRFGVLNAFDIEPPRNPYVYDGAGYYDTTGRAFFLGANYKL CCEEEEEEEEEEECCCCCCCEEECCCCEECCCCCEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11598060 [H]