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The map label for this gene is yahB [H]

Identifier: 157963153

GI number: 157963153

Start: 4079315

End: 4080220

Strand: Reverse

Name: yahB [H]

Synonym: Spea_3337

Alternate gene names: 157963153

Gene position: 4080220-4079315 (Counterclockwise)

Preceding gene: 157963161

Following gene: 157963150

Centisome position: 78.85

GC content: 45.36

Gene sequence:

>906_bases
ATGTATAGTTTTGAGCAGTTGAAAATCTTTGTCACTGTATGTGAAACCGGCTCTTTTTCAGCTGCGGCGCGCAAATTAAA
GCGCGCACAATCTGGGGTGAGTCAGGCTATTTCAAACTTAGAGATCGCAATTAATCAGGAGTTGTTTAATCGCGATAAAA
ACACGCCTGTGTTAACTGAAAATGCCAAAGCGCTATTGCCAATCGCTTATTCAATCCTGCACCAGCAGCAGTACTTTGAT
CAAAAAATCGAATCACTGACAAAAGCCGATGAACATCAATTGGTGATAGCGATTGATGAAAGCTTGATGAATGGGGATTT
TGTGAAAATTCTAACCCCCTTAGCCGATAAGTTTCCTATTACTCACATTGAGCTGATTAGTGCCTCGACCTTTGATGTTG
AGGAGTTAGTCCGTAAAGGCAAAGCCCAAGTGGGAATTGTATATGCTGATGGTGAGTTAAAAGTCGATATGGATTTCTTT
GTGCTGGGGCAAGCAAGATTTTTAACTGTTGCCTCACCTATGCATGCGCTAGCGGCATTGCCAGTGGTTCATGACTCGGA
TCTTAAAGCGCATCGCCAGTGTGTGCATCGCAGTGCTAAACAAAAAGAGCTTTGGTTTAGCTATGGGATCAGCAGTGCGA
TGTGGTACGCCAATACTCACCAAATTTTGCTGGAGTTAGTCGATAATGGCATAGGCTGGGCCGTTGTACCTGAGCTGCTG
GTAAAAGAGCGTATCAAGCAATCTAGCCTAGTGGCGCTACCGGTTGCGCATGAATATAACGGCTGGCTAACAGCTGTGGG
CTGCTTAGTGTCAAGGAGTCATGGCTCAGGCCCGGTATTAGAAAGCTTGATTGCGCGGCTACAGGAGTATTTCTTTAACC
GTGCCGATTGGCAGCTGCGAGAATAA

Upstream 100 bases:

>100_bases
AAAAGGGCGCTGATTATTACAGGAAAAAAGAGTAGGCAAAGTTAACAGCTATCACATTTCGTGATGGCTTACGTCGATTA
CCCTCTATTGGATACGAAAC

Downstream 100 bases:

>100_bases
AGTACATTGAAAGGGCATTGAAGTAACAAGGCTCAGTTCACTTCATTTCTTTTTATTTTAGCGCAGCAAGGTTGGCCTTT
TCTCTATCCATCACTGATAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MYSFEQLKIFVTVCETGSFSAAARKLKRAQSGVSQAISNLEIAINQELFNRDKNTPVLTENAKALLPIAYSILHQQQYFD
QKIESLTKADEHQLVIAIDESLMNGDFVKILTPLADKFPITHIELISASTFDVEELVRKGKAQVGIVYADGELKVDMDFF
VLGQARFLTVASPMHALAALPVVHDSDLKAHRQCVHRSAKQKELWFSYGISSAMWYANTHQILLELVDNGIGWAVVPELL
VKERIKQSSLVALPVAHEYNGWLTAVGCLVSRSHGSGPVLESLIARLQEYFFNRADWQLRE

Sequences:

>Translated_301_residues
MYSFEQLKIFVTVCETGSFSAAARKLKRAQSGVSQAISNLEIAINQELFNRDKNTPVLTENAKALLPIAYSILHQQQYFD
QKIESLTKADEHQLVIAIDESLMNGDFVKILTPLADKFPITHIELISASTFDVEELVRKGKAQVGIVYADGELKVDMDFF
VLGQARFLTVASPMHALAALPVVHDSDLKAHRQCVHRSAKQKELWFSYGISSAMWYANTHQILLELVDNGIGWAVVPELL
VKERIKQSSLVALPVAHEYNGWLTAVGCLVSRSHGSGPVLESLIARLQEYFFNRADWQLRE
>Mature_301_residues
MYSFEQLKIFVTVCETGSFSAAARKLKRAQSGVSQAISNLEIAINQELFNRDKNTPVLTENAKALLPIAYSILHQQQYFD
QKIESLTKADEHQLVIAIDESLMNGDFVKILTPLADKFPITHIELISASTFDVEELVRKGKAQVGIVYADGELKVDMDFF
VLGQARFLTVASPMHALAALPVVHDSDLKAHRQCVHRSAKQKELWFSYGISSAMWYANTHQILLELVDNGIGWAVVPELL
VKERIKQSSLVALPVAHEYNGWLTAVGCLVSRSHGSGPVLESLIARLQEYFFNRADWQLRE

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786508, Length=259, Percent_Identity=23.9382239382239, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788887, Length=304, Percent_Identity=25.6578947368421, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1786401, Length=264, Percent_Identity=26.1363636363636, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33727; Mature: 33727

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYSFEQLKIFVTVCETGSFSAAARKLKRAQSGVSQAISNLEIAINQELFNRDKNTPVLTE
CCCHHHEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHEEECHHHHCCCCCCCEEEC
NAKALLPIAYSILHQQQYFDQKIESLTKADEHQLVIAIDESLMNGDFVKILTPLADKFPI
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHCCCCHHHHHHHHHHCCCC
THIELISASTFDVEELVRKGKAQVGIVYADGELKVDMDFFVLGQARFLTVASPMHALAAL
CEEEEECCCCCCHHHHHHCCCCEEEEEEECCEEEEEEEEEEECCCCEEEEHHHHHHHHHC
PVVHDSDLKAHRQCVHRSAKQKELWFSYGISSAMWYANTHQILLELVDNGIGWAVVPELL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHEECHHHHHHHHHHHCCCCHHHHHHHH
VKERIKQSSLVALPVAHEYNGWLTAVGCLVSRSHGSGPVLESLIARLQEYFFNRADWQLR
HHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEC
E
C
>Mature Secondary Structure
MYSFEQLKIFVTVCETGSFSAAARKLKRAQSGVSQAISNLEIAINQELFNRDKNTPVLTE
CCCHHHEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHEEECHHHHCCCCCCCEEEC
NAKALLPIAYSILHQQQYFDQKIESLTKADEHQLVIAIDESLMNGDFVKILTPLADKFPI
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHCCCCHHHHHHHHHHCCCC
THIELISASTFDVEELVRKGKAQVGIVYADGELKVDMDFFVLGQARFLTVASPMHALAAL
CEEEEECCCCCCHHHHHHCCCCEEEEEEECCEEEEEEEEEEECCCCEEEEHHHHHHHHHC
PVVHDSDLKAHRQCVHRSAKQKELWFSYGISSAMWYANTHQILLELVDNGIGWAVVPELL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHEECHHHHHHHHHHHCCCCHHHHHHHH
VKERIKQSSLVALPVAHEYNGWLTAVGCLVSRSHGSGPVLESLIARLQEYFFNRADWQLR
HHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEC
E
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]