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The map label for this gene is yjcD [H]

Identifier: 157962844

GI number: 157962844

Start: 3709871

End: 3711229

Strand: Reverse

Name: yjcD [H]

Synonym: Spea_3026

Alternate gene names: 157962844

Gene position: 3711229-3709871 (Counterclockwise)

Preceding gene: 157962845

Following gene: 157962840

Centisome position: 71.72

GC content: 49.08

Gene sequence:

>1359_bases
ATGAAGTCTGAACAGACTCTTGCAACCCCTGTTACTCCTGCCGATTCAGTTCTGGATCGTTATTTCAAAATATCAGCTCG
TGGAAGCACCCTAAGACGCGAAGTGATCGCGGGTTTTACCACGTTTCTAGCCATGGTGTATTCGGTGATTGTGGTGCCGA
ATATGTTAGGCGCTGCCGGATTTGATACAGGTGCAGTCTTTATTGCGACCTGTTTAATTGCGGCCTTTGGCTCATTACTG
ATGGGCTTATGGGCGAACTTGCCAATGGCGATTGGCTGCGCGATTTCGCTAACCGCTTTCACCGCTTTTAGTATGGTGTT
AGGTCAAGGGATCTCTATTCCTGTGACTCTTGGCGCTATCTTCTTGATGGGTATCGTATTCACGCTAGTGAGTGTGACCG
GCGTGCGTCAGTGGGTACTGACTAACTTGCCAAAAGGTATTGCTCACGGTACGGGTATTGGTATCGGCTTGTTTCTACTG
TTAATTGCTACTAACAGCGTGCAGTTGATTGTTGCCAACGATACAGGCTTGCCTGTGGCGCTAGGCGATATTCATAGCCT
ACCTGTGATTGCGACGATTATTGGGCTTGCAGCGACTATCGGTCTTGAGCGCCGCGGCATGCCAGGTGGCATCCTTGTGG
TGATCATAGCGCTATCGGTATTTGGTTTAATATTCGATCCTGCCGTCAAGTTCCAAGGCTTTTTCGCGCTGCCAGACTTG
ATGTCTGATAACTCACTTATCGGCCAGCTCGATATCATGGGCGCATTGAACCCTGTAGTTCTGCCTATCGTATTAGCCTT
GGTGATGACGGCAATTTTTGATGCAACAGGCACGATTCGTGCGGTTGCGGGGCAAGCCGATCTGCTCGATAAGAATGACA
ACATCATCGATGGTGGTAAGGCATTAACTTCAGACTCTGTTAGCAGCATCTTTGCTGGCGCAGTCGGCGGCGCACCCGCT
GCTGTTTATATCGAGTCGGCAGCAGGTACTGCTGCGGGTGGTAAAACAGGCCTAACGGCAACAATCGTCGGTGTGCTGTT
CCTGCTAATGATGTTCTTAGCGCCACTTAGCTACCTAGTGCCAGCTTATGCAACGGCTCCAGCGCTAATGTATGTGGGTC
TGTTGATGCTAAGTAATGTGACTAAGCTGGATTTTGACGATAAAGTCGATGCTATGGCAGGCTTGACCTGTGCAGTATTT
ATTATCTTAAGCTGTAATATCGTCACTGGTATTTTATTAGGCTTTGTGACACTTGTTATTGGCCGTCTATGTAGCGGTGA
GTGGCGCAAACTCAAGCCGGGTGTGCTTGCGATTACCTTAGGTTTGGTGGTGTTCTATATGGGCGGTTGGGCGATTTAA

Upstream 100 bases:

>100_bases
CTCACCCGATATTTTAGTCGGGGCTCTACCTGCCATAGCCAAGTGGCCAATTGAACTCAATTGGTTAACCATATTTAAGA
GATCAAAAGGTATTACTACT

Downstream 100 bases:

>100_bases
TTTCGATTTCCAATTACCTATAGTCTAACCATAACCATAAAAAAGCCAGTCATCAGTGACTGGCTTTTTGTTATGTAGTG
TCTGTCCCGTCCTGAGATAA

Product: xanthine/uracil/vitamin C permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 452; Mature: 452

Protein sequence:

>452_residues
MKSEQTLATPVTPADSVLDRYFKISARGSTLRREVIAGFTTFLAMVYSVIVVPNMLGAAGFDTGAVFIATCLIAAFGSLL
MGLWANLPMAIGCAISLTAFTAFSMVLGQGISIPVTLGAIFLMGIVFTLVSVTGVRQWVLTNLPKGIAHGTGIGIGLFLL
LIATNSVQLIVANDTGLPVALGDIHSLPVIATIIGLAATIGLERRGMPGGILVVIIALSVFGLIFDPAVKFQGFFALPDL
MSDNSLIGQLDIMGALNPVVLPIVLALVMTAIFDATGTIRAVAGQADLLDKNDNIIDGGKALTSDSVSSIFAGAVGGAPA
AVYIESAAGTAAGGKTGLTATIVGVLFLLMMFLAPLSYLVPAYATAPALMYVGLLMLSNVTKLDFDDKVDAMAGLTCAVF
IILSCNIVTGILLGFVTLVIGRLCSGEWRKLKPGVLAITLGLVVFYMGGWAI

Sequences:

>Translated_452_residues
MKSEQTLATPVTPADSVLDRYFKISARGSTLRREVIAGFTTFLAMVYSVIVVPNMLGAAGFDTGAVFIATCLIAAFGSLL
MGLWANLPMAIGCAISLTAFTAFSMVLGQGISIPVTLGAIFLMGIVFTLVSVTGVRQWVLTNLPKGIAHGTGIGIGLFLL
LIATNSVQLIVANDTGLPVALGDIHSLPVIATIIGLAATIGLERRGMPGGILVVIIALSVFGLIFDPAVKFQGFFALPDL
MSDNSLIGQLDIMGALNPVVLPIVLALVMTAIFDATGTIRAVAGQADLLDKNDNIIDGGKALTSDSVSSIFAGAVGGAPA
AVYIESAAGTAAGGKTGLTATIVGVLFLLMMFLAPLSYLVPAYATAPALMYVGLLMLSNVTKLDFDDKVDAMAGLTCAVF
IILSCNIVTGILLGFVTLVIGRLCSGEWRKLKPGVLAITLGLVVFYMGGWAI
>Mature_452_residues
MKSEQTLATPVTPADSVLDRYFKISARGSTLRREVIAGFTTFLAMVYSVIVVPNMLGAAGFDTGAVFIATCLIAAFGSLL
MGLWANLPMAIGCAISLTAFTAFSMVLGQGISIPVTLGAIFLMGIVFTLVSVTGVRQWVLTNLPKGIAHGTGIGIGLFLL
LIATNSVQLIVANDTGLPVALGDIHSLPVIATIIGLAATIGLERRGMPGGILVVIIALSVFGLIFDPAVKFQGFFALPDL
MSDNSLIGQLDIMGALNPVVLPIVLALVMTAIFDATGTIRAVAGQADLLDKNDNIIDGGKALTSDSVSSIFAGAVGGAPA
AVYIESAAGTAAGGKTGLTATIVGVLFLLMMFLAPLSYLVPAYATAPALMYVGLLMLSNVTKLDFDDKVDAMAGLTCAVF
IILSCNIVTGILLGFVTLVIGRLCSGEWRKLKPGVLAITLGLVVFYMGGWAI

Specific function: Unknown

COG id: COG2252

COG function: function code R; Permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine/uracil permease family. AzgA purine transporter (TC 2.A.1.40) subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790499, Length=449, Percent_Identity=72.1603563474387, Blast_Score=632, Evalue=0.0,
Organism=Escherichia coli, GI48994909, Length=454, Percent_Identity=72.4669603524229, Blast_Score=618, Evalue=1e-178,
Organism=Escherichia coli, GI87082309, Length=432, Percent_Identity=40.0462962962963, Blast_Score=287, Evalue=8e-79,
Organism=Escherichia coli, GI1790150, Length=432, Percent_Identity=38.8888888888889, Blast_Score=269, Evalue=3e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006043 [H]

Pfam domain/function: PF00860 Xan_ur_permease [H]

EC number: NA

Molecular weight: Translated: 46651; Mature: 46651

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHCCCCCHHCCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure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HHHCCCCCHHCCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]