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The map label for this gene is rraA [C]

Identifier: 157962231

GI number: 157962231

Start: 2939618

End: 2940115

Strand: Reverse

Name: rraA [C]

Synonym: Spea_2410

Alternate gene names: 157962231

Gene position: 2940115-2939618 (Counterclockwise)

Preceding gene: 157962233

Following gene: 157962230

Centisome position: 56.82

GC content: 42.37

Gene sequence:

>498_bases
ATGCTAGATCTGTTACCCGATTTATTCGACACTTATGGCGACAAACTCATATTACTCCCCCCTATGTTCATTTCTTATGG
TAAACAGGAGTGCTTTTGGGGTGAAGTCGTCACTGTAAAATGCTATCGAGACAATTCAAAAGTCAAAGAGTTACTCGCGC
AAGACGGTCGAGGTAAAGTCTTAGTTGTTGACGGCCAAGGAGGGATGGATTGCGCGCTATTAGGCGATATGATAGCCCAA
AATGCTGCGGATAACGGCTGGCAAGGAGTGGTCATTTTAGGCTGTGTGCGAGATGTCGGTACATTGAAAACGATTAACCT
CGGAATTCAAGCTATTGGTGCTAACCCAATCAAAACAGTGAAAAAGGGTATTGGTGAAGTTAACATTGCTGTAGAAATAT
ACGGCGTTATTATTTCACCTCAATCATTTATCTATGCCGACGGTAACGGAGTGGCTATATCGAATGAAGCGCTAGATATT
TCGGTACTCAATTTATAA

Upstream 100 bases:

>100_bases
GACATAAATTATCGTAAATTTCTGTGTTAATACTTGGGTTTCGACTCCTTACCTGTCAATCTAGGCAGATGTGTTACTTC
TACCTATGCATGGAGGCTTG

Downstream 100 bases:

>100_bases
TTATTTCTTCAAATTAGACGCTTTATAAAGGCTCATTATATGATTTTTATAAAAGTCTTTTAGTGATAACAGATGGGATC
TGCTATGAAATTTTTAAAAT

Product: regulator of ribonuclease activity A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MLDLLPDLFDTYGDKLILLPPMFISYGKQECFWGEVVTVKCYRDNSKVKELLAQDGRGKVLVVDGQGGMDCALLGDMIAQ
NAADNGWQGVVILGCVRDVGTLKTINLGIQAIGANPIKTVKKGIGEVNIAVEIYGVIISPQSFIYADGNGVAISNEALDI
SVLNL

Sequences:

>Translated_165_residues
MLDLLPDLFDTYGDKLILLPPMFISYGKQECFWGEVVTVKCYRDNSKVKELLAQDGRGKVLVVDGQGGMDCALLGDMIAQ
NAADNGWQGVVILGCVRDVGTLKTINLGIQAIGANPIKTVKKGIGEVNIAVEIYGVIISPQSFIYADGNGVAISNEALDI
SVLNL
>Mature_165_residues
MLDLLPDLFDTYGDKLILLPPMFISYGKQECFWGEVVTVKCYRDNSKVKELLAQDGRGKVLVVDGQGGMDCALLGDMIAQ
NAADNGWQGVVILGCVRDVGTLKTINLGIQAIGANPIKTVKKGIGEVNIAVEIYGVIISPQSFIYADGNGVAISNEALDI
SVLNL

Specific function: Regulator Of Rnase E/Rne, Which Inhibits The Endonuclease Activity And Thereby Leads To Increase The Half-Life And Abundance Of Rnas. General Modulator Of RNA Abundance. Does Not Have Any Methyltransferase Activity. [C]

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family [H]

Homologues:

Organism=Escherichia coli, GI1790364, Length=156, Percent_Identity=39.7435897435897, Blast_Score=123, Evalue=6e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005493
- InterPro:   IPR010203 [H]

Pfam domain/function: PF03737 Methyltransf_6 [H]

EC number: NA

Molecular weight: Translated: 17647; Mature: 17647

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDLLPDLFDTYGDKLILLPPMFISYGKQECFWGEVVTVKCYRDNSKVKELLAQDGRGKV
CCCCCHHHHHHHCCEEEEECCHHHHCCCCCCEECEEEEEEEECCCHHHHHHHHCCCCCCE
LVVDGQGGMDCALLGDMIAQNAADNGWQGVVILGCVRDVGTLKTINLGIQAIGANPIKTV
EEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEEECEEEECCCHHHHH
KKGIGEVNIAVEIYGVIISPQSFIYADGNGVAISNEALDISVLNL
HHCCCEEEEEEEEEEEEECCCEEEEECCCCEEEECCCEEEEEECC
>Mature Secondary Structure
MLDLLPDLFDTYGDKLILLPPMFISYGKQECFWGEVVTVKCYRDNSKVKELLAQDGRGKV
CCCCCHHHHHHHCCEEEEECCHHHHCCCCCCEECEEEEEEEECCCHHHHHHHHCCCCCCE
LVVDGQGGMDCALLGDMIAQNAADNGWQGVVILGCVRDVGTLKTINLGIQAIGANPIKTV
EEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEEECEEEECCCHHHHH
KKGIGEVNIAVEIYGVIISPQSFIYADGNGVAISNEALDISVLNL
HHCCCEEEEEEEEEEEEECCCEEEEECCCCEEEECCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]